EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000040054 (Gene tree)
Gene ID: 116848
Gene Symbol: Baz2a
Alias: C030005G16Rik|Tip5|Walp3
Full Name: bromodomain adjacent to zinc finger domain%2C 2A
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 37727 bases
Position: chr10:128091577-128129303
Accession: 2151152
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000151308	MBD	PF01429.19	3.2e-20	1	1
ENSMUSP00000044359	MBD	PF01429.19	8.6e-20	1	1
ENSMUSP00000151961	MBD	PF01429.19	8.6e-20	1	1
ENSMUSP00000129803	MBD	PF01429.19	8.6e-20	1	1
ENSMUSP00000151445	MBD	PF01429.19	8.6e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000219072	-	2446	-	ENSMUSP00000151308	763 (aa)	-	A0A1W2P6L0
ENSMUST00000220049	-	8443	XM_006513114	ENSMUSP00000151961	1887 (aa)	XP_006513177	F8VPM0
ENSMUST00000170054	-	8372	XM_006513115	ENSMUSP00000129803	1888 (aa)	XP_006513178	E9Q374
ENSMUST00000218772	-	3721	-	-	- (aa)	-	-
ENSMUST00000045621	-	8369	-	ENSMUSP00000044359	1887 (aa)	-	F8VPM0
ENSMUST00000219082	-	1782	-	-	- (aa)	-	-
ENSMUST00000219980	-	2455	-	-	- (aa)	-	-
ENSMUST00000217851	-	8385	-	ENSMUSP00000151445	1890 (aa)	-	A0A1W2P6X9

Gene Model

Click here to download ENSMUSG00000040054's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040054's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040054	Baz2a	99	85.976	ENSG00000076108	BAZ2A	100	97.414	Homo_sapiens
ENSMUSG00000040054	Baz2a	100	82.814	ENSAMEG00000004115	BAZ2A	99	83.134	Ailuropoda_melanoleuca
ENSMUSG00000040054	Baz2a	67	46.751	ENSATEG00000016605	baz2a	52	46.185	Anabas_testudineus
ENSMUSG00000040054	Baz2a	99	56.219	ENSACAG00000016700	BAZ2A	95	56.021	Anolis_carolinensis
ENSMUSG00000040054	Baz2a	99	84.666	ENSANAG00000019057	BAZ2A	100	83.596	Aotus_nancymaae
ENSMUSG00000040054	Baz2a	81	45.870	ENSAMXG00000001995	baz2a	52	45.178	Astyanax_mexicanus
ENSMUSG00000040054	Baz2a	99	85.450	ENSBTAG00000017840	BAZ2A	100	83.421	Bos_taurus
ENSMUSG00000040054	Baz2a	99	83.312	ENSCJAG00000010774	BAZ2A	100	81.942	Callithrix_jacchus
ENSMUSG00000040054	Baz2a	99	83.679	ENSCAFG00000000135	BAZ2A	100	82.697	Canis_familiaris
ENSMUSG00000040054	Baz2a	100	81.543	ENSCAFG00020024281	BAZ2A	100	80.731	Canis_lupus_dingo
ENSMUSG00000040054	Baz2a	100	80.992	ENSCHIG00000025797	BAZ2A	100	80.450	Capra_hircus
ENSMUSG00000040054	Baz2a	96	85.501	ENSTSYG00000008784	BAZ2A	100	81.326	Carlito_syrichta
ENSMUSG00000040054	Baz2a	100	76.120	ENSCPOG00000006404	BAZ2A	99	81.533	Cavia_porcellus
ENSMUSG00000040054	Baz2a	98	83.127	ENSCCAG00000033508	BAZ2A	100	83.127	Cebus_capucinus
ENSMUSG00000040054	Baz2a	99	85.321	ENSCATG00000042491	BAZ2A	100	83.797	Cercocebus_atys
ENSMUSG00000040054	Baz2a	97	82.703	ENSCLAG00000010711	BAZ2A	100	76.956	Chinchilla_lanigera
ENSMUSG00000040054	Baz2a	99	85.583	ENSCSAG00000005062	BAZ2A	99	83.744	Chlorocebus_sabaeus
ENSMUSG00000040054	Baz2a	90	85.362	ENSCHOG00000007335	BAZ2A	90	84.928	Choloepus_hoffmanni
ENSMUSG00000040054	Baz2a	99	85.321	ENSCANG00000000275	BAZ2A	100	83.849	Colobus_angolensis_palliatus
ENSMUSG00000040054	Baz2a	100	87.184	ENSCGRG00001005683	Baz2a	100	87.395	Cricetulus_griseus_chok1gshd
ENSMUSG00000040054	Baz2a	100	87.184	ENSCGRG00000007771	Baz2a	100	87.395	Cricetulus_griseus_crigri
ENSMUSG00000040054	Baz2a	67	45.717	ENSCVAG00000015916	baz2a	50	45.387	Cyprinodon_variegatus
ENSMUSG00000040054	Baz2a	67	45.619	ENSDARG00000102974	baz2a	62	51.681	Danio_rerio
ENSMUSG00000040054	Baz2a	100	82.713	ENSDNOG00000011221	BAZ2A	100	81.937	Dasypus_novemcinctus
ENSMUSG00000040054	Baz2a	99	84.664	ENSDORG00000009234	Baz2a	100	84.506	Dipodomys_ordii
ENSMUSG00000040054	Baz2a	100	80.236	ENSETEG00000010203	BAZ2A	91	80.435	Echinops_telfairi
ENSMUSG00000040054	Baz2a	100	82.958	ENSEASG00005006215	BAZ2A	100	82.109	Equus_asinus_asinus
ENSMUSG00000040054	Baz2a	100	82.126	ENSECAG00000018243	BAZ2A	100	82.126	Equus_caballus
ENSMUSG00000040054	Baz2a	67	47.901	ENSELUG00000015700	baz2a	55	55.556	Esox_lucius
ENSMUSG00000040054	Baz2a	100	83.412	ENSFCAG00000012029	BAZ2A	100	83.874	Felis_catus
ENSMUSG00000040054	Baz2a	95	84.636	ENSFDAG00000010784	BAZ2A	99	84.636	Fukomys_damarensis
ENSMUSG00000040054	Baz2a	69	54.141	ENSGMOG00000001100	baz2a	82	47.774	Gadus_morhua
ENSMUSG00000040054	Baz2a	67	45.731	ENSGAFG00000012444	baz2a	52	45.305	Gambusia_affinis
ENSMUSG00000040054	Baz2a	74	58.596	ENSGAGG00000000428	-	99	56.716	Gopherus_agassizii
ENSMUSG00000040054	Baz2a	99	85.714	ENSGGOG00000011580	BAZ2A	100	84.199	Gorilla_gorilla
ENSMUSG00000040054	Baz2a	52	53.947	ENSHBUG00000011999	baz2a	50	45.462	Haplochromis_burtoni
ENSMUSG00000040054	Baz2a	100	83.011	ENSHGLG00000009114	-	100	82.070	Heterocephalus_glaber_female
ENSMUSG00000040054	Baz2a	94	76.741	ENSHGLG00000003725	-	99	70.152	Heterocephalus_glaber_female
ENSMUSG00000040054	Baz2a	94	75.417	ENSHGLG00100000993	-	99	70.016	Heterocephalus_glaber_male
ENSMUSG00000040054	Baz2a	100	82.636	ENSHGLG00100011609	-	100	81.695	Heterocephalus_glaber_male
ENSMUSG00000040054	Baz2a	83	45.003	ENSHCOG00000019107	baz2a	55	46.160	Hippocampus_comes
ENSMUSG00000040054	Baz2a	100	85.317	ENSSTOG00000013452	BAZ2A	100	85.160	Ictidomys_tridecemlineatus
ENSMUSG00000040054	Baz2a	99	85.563	ENSJJAG00000009782	Baz2a	100	83.580	Jaculus_jaculus
ENSMUSG00000040054	Baz2a	57	44.755	ENSLBEG00000019144	baz2a	56	50.840	Labrus_bergylta
ENSMUSG00000040054	Baz2a	100	51.537	ENSLACG00000018672	BAZ2A	100	52.031	Latimeria_chalumnae
ENSMUSG00000040054	Baz2a	77	58.333	ENSLOCG00000007281	baz2a	82	52.361	Lepisosteus_oculatus
ENSMUSG00000040054	Baz2a	100	82.303	ENSLAFG00000008255	BAZ2A	100	81.616	Loxodonta_africana
ENSMUSG00000040054	Baz2a	99	85.321	ENSMFAG00000029840	BAZ2A	100	83.770	Macaca_fascicularis
ENSMUSG00000040054	Baz2a	99	85.452	ENSMMUG00000019332	BAZ2A	99	83.849	Macaca_mulatta
ENSMUSG00000040054	Baz2a	99	85.452	ENSMNEG00000034555	BAZ2A	100	83.797	Macaca_nemestrina
ENSMUSG00000040054	Baz2a	99	85.452	ENSMLEG00000042063	BAZ2A	100	83.927	Mandrillus_leucophaeus
ENSMUSG00000040054	Baz2a	52	53.947	ENSMZEG00005026049	baz2a	50	45.626	Maylandia_zebra
ENSMUSG00000040054	Baz2a	100	83.107	ENSMAUG00000020341	Baz2a	100	83.421	Mesocricetus_auratus
ENSMUSG00000040054	Baz2a	100	87.718	ENSMOCG00000012655	Baz2a	100	88.460	Microtus_ochrogaster
ENSMUSG00000040054	Baz2a	100	99.738	MGP_SPRETEiJ_G0016745	Baz2a	100	99.630	Mus_spretus
ENSMUSG00000040054	Baz2a	100	79.730	ENSMPUG00000001495	BAZ2A	100	80.967	Mustela_putorius_furo
ENSMUSG00000040054	Baz2a	96	83.827	ENSMLUG00000000546	-	99	81.783	Myotis_lucifugus
ENSMUSG00000040054	Baz2a	100	85.164	ENSNGAG00000021737	Baz2a	100	85.797	Nannospalax_galili
ENSMUSG00000040054	Baz2a	99	85.059	ENSNLEG00000017462	BAZ2A	100	83.717	Nomascus_leucogenys
ENSMUSG00000040054	Baz2a	92	94.118	ENSMEUG00000002868	BAZ2A	91	94.118	Notamacropus_eugenii
ENSMUSG00000040054	Baz2a	99	79.429	ENSOPRG00000001687	BAZ2A	98	78.764	Ochotona_princeps
ENSMUSG00000040054	Baz2a	100	82.066	ENSODEG00000005990	BAZ2A	99	81.751	Octodon_degus
ENSMUSG00000040054	Baz2a	100	42.051	ENSONIG00000017063	baz2a	98	47.626	Oreochromis_niloticus
ENSMUSG00000040054	Baz2a	100	80.749	ENSOCUG00000006079	BAZ2A	99	80.443	Oryctolagus_cuniculus
ENSMUSG00000040054	Baz2a	100	82.282	ENSOGAG00000003537	BAZ2A	100	81.546	Otolemur_garnettii
ENSMUSG00000040054	Baz2a	99	84.941	ENSOARG00000008407	BAZ2A	100	83.246	Ovis_aries
ENSMUSG00000040054	Baz2a	99	85.976	ENSPPAG00000003707	BAZ2A	100	84.304	Pan_paniscus
ENSMUSG00000040054	Baz2a	100	83.516	ENSPPRG00000006678	BAZ2A	100	83.770	Panthera_pardus
ENSMUSG00000040054	Baz2a	100	83.412	ENSPTIG00000018184	BAZ2A	100	83.665	Panthera_tigris_altaica
ENSMUSG00000040054	Baz2a	99	85.845	ENSPTRG00000005106	BAZ2A	100	84.224	Pan_troglodytes
ENSMUSG00000040054	Baz2a	99	85.321	ENSPANG00000021120	BAZ2A	100	83.770	Papio_anubis
ENSMUSG00000040054	Baz2a	82	48.429	ENSPKIG00000023937	baz2a	75	47.111	Paramormyrops_kingsleyae
ENSMUSG00000040054	Baz2a	99	84.325	ENSPEMG00000018987	Baz2a	99	84.325	Peromyscus_maniculatus_bairdii
ENSMUSG00000040054	Baz2a	98	76.905	ENSPCIG00000018044	BAZ2A	100	79.661	Phascolarctos_cinereus
ENSMUSG00000040054	Baz2a	100	40.699	ENSPFOG00000011764	baz2a	100	41.179	Poecilia_formosa
ENSMUSG00000040054	Baz2a	67	44.324	ENSPLAG00000005140	baz2a	51	45.507	Poecilia_latipinna
ENSMUSG00000040054	Baz2a	67	45.137	ENSPMEG00000015610	baz2a	52	45.432	Poecilia_mexicana
ENSMUSG00000040054	Baz2a	99	85.583	ENSPPYG00000004667	BAZ2A	100	84.006	Pongo_abelii
ENSMUSG00000040054	Baz2a	99	79.431	ENSPCAG00000010434	BAZ2A	77	85.532	Procavia_capensis
ENSMUSG00000040054	Baz2a	100	83.788	ENSPCOG00000017805	BAZ2A	100	83.761	Propithecus_coquereli
ENSMUSG00000040054	Baz2a	99	82.723	ENSPVAG00000007618	BAZ2A	91	85.311	Pteropus_vampyrus
ENSMUSG00000040054	Baz2a	81	46.253	ENSPNAG00000010685	baz2a	53	47.770	Pygocentrus_nattereri
ENSMUSG00000040054	Baz2a	99	87.979	ENSRNOG00000053881	Baz2a	99	89.417	Rattus_norvegicus
ENSMUSG00000040054	Baz2a	100	82.791	ENSRBIG00000040119	BAZ2A	100	82.844	Rhinopithecus_bieti
ENSMUSG00000040054	Baz2a	99	85.321	ENSRROG00000041655	BAZ2A	100	83.849	Rhinopithecus_roxellana
ENSMUSG00000040054	Baz2a	99	84.928	ENSSBOG00000032610	BAZ2A	100	83.465	Saimiri_boliviensis_boliviensis
ENSMUSG00000040054	Baz2a	100	69.743	ENSSHAG00000000118	BAZ2A	100	69.316	Sarcophilus_harrisii
ENSMUSG00000040054	Baz2a	66	50.481	ENSSFOG00015013413	baz2a	60	49.322	Scleropages_formosus
ENSMUSG00000040054	Baz2a	96	79.840	ENSSARG00000009404	-	54	97.561	Sorex_araneus
ENSMUSG00000040054	Baz2a	73	84.756	ENSSPUG00000004790	BAZ2A	97	58.673	Sphenodon_punctatus
ENSMUSG00000040054	Baz2a	67	45.224	ENSSPAG00000016257	baz2a	50	45.912	Stegastes_partitus
ENSMUSG00000040054	Baz2a	99	84.047	ENSSSCG00000000403	BAZ2A	100	86.422	Sus_scrofa
ENSMUSG00000040054	Baz2a	51	41.774	ENSTRUG00000003058	baz2a	53	44.490	Takifugu_rubripes
ENSMUSG00000040054	Baz2a	79	45.574	ENSTNIG00000012597	baz2a	78	45.300	Tetraodon_nigroviridis
ENSMUSG00000040054	Baz2a	80	80.327	ENSTBEG00000001463	BAZ2A	80	80.719	Tupaia_belangeri
ENSMUSG00000040054	Baz2a	90	81.127	ENSTTRG00000002130	BAZ2A	89	81.127	Tursiops_truncatus
ENSMUSG00000040054	Baz2a	99	82.513	ENSUAMG00000021587	BAZ2A	100	81.635	Ursus_americanus
ENSMUSG00000040054	Baz2a	99	82.383	ENSUMAG00000017488	BAZ2A	100	81.583	Ursus_maritimus
ENSMUSG00000040054	Baz2a	99	85.864	ENSVPAG00000004023	BAZ2A	83	88.670	Vicugna_pacos
ENSMUSG00000040054	Baz2a	100	81.184	ENSVVUG00000020881	BAZ2A	100	80.975	Vulpes_vulpes
ENSMUSG00000040054	Baz2a	97	49.123	ENSXETG00000021782	baz2a	99	49.227	Xenopus_tropicalis
ENSMUSG00000040054	Baz2a	67	45.616	ENSXMAG00000017451	baz2a	50	45.583	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000183	chromatin silencing at rDNA	12198165.16085498.16678107.19578370.	IDA	Process
GO:0000183	chromatin silencing at rDNA	20168299.	IMP	Process
GO:0001164	RNA polymerase I CORE element sequence-specific DNA binding	-	ISO	Function
GO:0003677	DNA binding	11532953.	IDA	Function
GO:0003723	RNA binding	16678107.18600236.19578370.	IDA	Function
GO:0005515	protein binding	11532953.12198165.16085498.19578370.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005677	chromatin silencing complex	16085498.19578370.	IDA	Component
GO:0005730	nucleolus	11532953.16085498.16678107.18600236.19578370.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006306	DNA methylation	16085498.19578370.	IDA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006338	chromatin remodeling	11532953.	IGI	Process
GO:0016479	negative regulation of transcription by RNA polymerase I	12368916.	IMP	Process
GO:0016575	histone deacetylation	12198165.	IDA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0033553	rDNA heterochromatin	12198165.19578370.	IDA	Component
GO:0034770	histone H4-K20 methylation	16678107.	IDA	Process
GO:0042393	histone binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0051567	histone H3-K9 methylation	16678107.	IDA	Process
GO:0070577	lysine-acetylated histone binding	16085498.19578370.	IDA	Function
GO:0070869	heterochromatin assembly involved in chromatin silencing	16678107.	IDA	Process
GO:0070869	heterochromatin assembly involved in chromatin silencing	20168299.	IMP	Process
GO:0070933	histone H4 deacetylation	16678107.	IDA	Process