EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000040174 (Gene tree)
Gene ID
69113
Gene Symbol
Alkbh3
Alias
1700108H04Rik|1810020C19Rik|Abh3|mABH3
Full Name
alkB homolog 3%2C alpha-ketoglutarate-dependent dioxygenase
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Minus strand
Length
30258 bases
Position
chr2:93980550-94010807
Accession
1916363
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP000000387212OG-FeII_Oxy_2PF13532.62.6e-2911
ENSMUSP000001068712OG-FeII_Oxy_2PF13532.62.6e-2911
ENSMUSP000001220432OG-FeII_Oxy_2PF13532.62.7e-0911
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000130403-460--- (aa)--
ENSMUST00000138107-428--- (aa)--
ENSMUST00000126255-679--- (aa)--
ENSMUST00000138046-825--- (aa)--
ENSMUST00000111240-1395-ENSMUSP00000106871287 (aa)-A2AKV6
ENSMUST00000040005-1228XM_006500123ENSMUSP00000038721286 (aa)XP_006500186Q8K1E6
ENSMUST00000127231-705--- (aa)--
ENSMUST00000130289-765--- (aa)--
ENSMUST00000156763-965--- (aa)--
ENSMUST00000126378-897XM_006500125ENSMUSP00000122043202 (aa)XP_006500188A2AKV7
ENSMUST00000125473-731--- (aa)--
Gene Model
Click here to download ENSMUSG00000040174's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040174's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000040174Alkbh36638.660ENSMUSG00000044339Alkbh28038.660
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000040174Alkbh39985.965ENSG00000166199ALKBH39985.965Homo_sapiens
ENSMUSG00000040174Alkbh39954.167ENSAPOG00000008495alkbh39554.167Acanthochromis_polyacanthus
ENSMUSG00000040174Alkbh39982.042ENSAMEG00000004842ALKBH39682.042Ailuropoda_melanoleuca
ENSMUSG00000040174Alkbh39853.710ENSACIG00000011887alkbh310053.710Amphilophus_citrinellus
ENSMUSG00000040174Alkbh39954.167ENSAOCG00000023500alkbh39554.167Amphiprion_ocellaris
ENSMUSG00000040174Alkbh39954.167ENSAPEG00000011723alkbh39554.167Amphiprion_percula
ENSMUSG00000040174Alkbh39954.545ENSATEG00000021785alkbh39554.545Anabas_testudineus
ENSMUSG00000040174Alkbh39848.822ENSACAG00000000855ALKBH39852.189Anolis_carolinensis
ENSMUSG00000040174Alkbh39981.944ENSANAG00000033941ALKBH39981.944Aotus_nancymaae
ENSMUSG00000040174Alkbh39954.386ENSACLG00000023226alkbh39654.386Astatotilapia_calliptera
ENSMUSG00000040174Alkbh39857.295ENSAMXG00000037076alkbh39857.295Astyanax_mexicanus
ENSMUSG00000040174Alkbh39982.042ENSBTAG00000009518ALKBH39982.042Bos_taurus
ENSMUSG00000040174Alkbh39882.394ENSCJAG00000011353ALKBH310082.394Callithrix_jacchus
ENSMUSG00000040174Alkbh39982.746ENSCAFG00000006657ALKBH39883.039Canis_familiaris
ENSMUSG00000040174Alkbh39982.394ENSCAFG00020006841ALKBH39882.686Canis_lupus_dingo
ENSMUSG00000040174Alkbh39982.394ENSCHIG00000017579ALKBH39982.394Capra_hircus
ENSMUSG00000040174Alkbh39984.155ENSTSYG00000005498ALKBH39984.155Carlito_syrichta
ENSMUSG00000040174Alkbh39979.649ENSCAPG00000004995ALKBH39979.649Cavia_aperea
ENSMUSG00000040174Alkbh39981.754ENSCPOG00000005138ALKBH39981.754Cavia_porcellus
ENSMUSG00000040174Alkbh39982.639ENSCCAG00000036907ALKBH39982.639Cebus_capucinus
ENSMUSG00000040174Alkbh39985.263ENSCATG00000035646ALKBH39985.263Cercocebus_atys
ENSMUSG00000040174Alkbh39981.404ENSCLAG00000016579ALKBH39981.404Chinchilla_lanigera
ENSMUSG00000040174Alkbh39984.211ENSCSAG00000005539ALKBH39984.211Chlorocebus_sabaeus
ENSMUSG00000040174Alkbh39981.533ENSCHOG00000001407ALKBH39981.533Choloepus_hoffmanni
ENSMUSG00000040174Alkbh310068.858ENSCPBG00000012575ALKBH310068.858Chrysemys_picta_bellii
ENSMUSG00000040174Alkbh35256.667ENSCING00000007764-9756.667Ciona_intestinalis
ENSMUSG00000040174Alkbh39642.294ENSCSAVG00000000783-9842.294Ciona_savignyi
ENSMUSG00000040174Alkbh39984.912ENSCANG00000018698ALKBH39984.912Colobus_angolensis_palliatus
ENSMUSG00000040174Alkbh39989.085ENSCGRG00001014489Alkbh39989.085Cricetulus_griseus_chok1gshd
ENSMUSG00000040174Alkbh39989.085ENSCGRG00000017661Alkbh39989.085Cricetulus_griseus_crigri
ENSMUSG00000040174Alkbh39953.004ENSCSEG00000000814alkbh39553.004Cynoglossus_semilaevis
ENSMUSG00000040174Alkbh39955.282ENSCVAG00000009432alkbh39555.282Cyprinodon_variegatus
ENSMUSG00000040174Alkbh39955.634ENSDARG00000045606alkbh39755.634Danio_rerio
ENSMUSG00000040174Alkbh39982.686ENSDNOG00000036652ALKBH39982.686Dasypus_novemcinctus
ENSMUSG00000040174Alkbh310083.566ENSDORG00000000083Alkbh310083.566Dipodomys_ordii
ENSMUSG00000040174Alkbh39983.746ENSEASG00005014856ALKBH39683.746Equus_asinus_asinus
ENSMUSG00000040174Alkbh39984.099ENSECAG00000010673ALKBH39684.099Equus_caballus
ENSMUSG00000040174Alkbh310053.465ENSEEUG00000002183ALKBH37756.951Erinaceus_europaeus
ENSMUSG00000040174Alkbh39749.825ENSELUG00000003260alkbh39449.825Esox_lucius
ENSMUSG00000040174Alkbh39983.451ENSFCAG00000029461ALKBH39983.451Felis_catus
ENSMUSG00000040174Alkbh39868.327ENSFALG00000012361ALKBH39868.327Ficedula_albicollis
ENSMUSG00000040174Alkbh310081.469ENSFDAG00000012666ALKBH310081.469Fukomys_damarensis
ENSMUSG00000040174Alkbh39954.577ENSFHEG00000018735alkbh39554.577Fundulus_heteroclitus
ENSMUSG00000040174Alkbh39953.819ENSGMOG00000019146alkbh39653.819Gadus_morhua
ENSMUSG00000040174Alkbh39465.799ENSGALG00000041309ALKBH36965.799Gallus_gallus
ENSMUSG00000040174Alkbh39953.846ENSGAFG00000005814alkbh39752.290Gambusia_affinis
ENSMUSG00000040174Alkbh39952.817ENSGACG00000006950alkbh39952.817Gasterosteus_aculeatus
ENSMUSG00000040174Alkbh37075.500ENSGAGG00000013151ALKBH39975.500Gopherus_agassizii
ENSMUSG00000040174Alkbh39985.614ENSGGOG00000001931ALKBH39985.614Gorilla_gorilla
ENSMUSG00000040174Alkbh39954.035ENSHBUG00000008513alkbh39654.035Haplochromis_burtoni
ENSMUSG00000040174Alkbh310080.070ENSHGLG00000019437ALKBH310082.168Heterocephalus_glaber_female
ENSMUSG00000040174Alkbh39976.000ENSHGLG00100004468ALKBH310074.825Heterocephalus_glaber_male
ENSMUSG00000040174Alkbh39855.477ENSIPUG00000017036alkbh39855.477Ictalurus_punctatus
ENSMUSG00000040174Alkbh39884.698ENSSTOG00000006060ALKBH310084.698Ictidomys_tridecemlineatus
ENSMUSG00000040174Alkbh39980.986ENSJJAG00000018577-9880.986Jaculus_jaculus
ENSMUSG00000040174Alkbh39953.521ENSKMAG00000006499alkbh39553.521Kryptolebias_marmoratus
ENSMUSG00000040174Alkbh39954.007ENSLBEG00000004226alkbh39554.007Labrus_bergylta
ENSMUSG00000040174Alkbh39861.458ENSLACG00000017208ALKBH39961.458Latimeria_chalumnae
ENSMUSG00000040174Alkbh39853.901ENSLOCG00000001237alkbh310053.901Lepisosteus_oculatus
ENSMUSG00000040174Alkbh39982.746ENSLAFG00000003441ALKBH39982.746Loxodonta_africana
ENSMUSG00000040174Alkbh39984.912ENSMFAG00000031334ALKBH39984.912Macaca_fascicularis
ENSMUSG00000040174Alkbh39984.912ENSMNEG00000042403ALKBH39984.912Macaca_nemestrina
ENSMUSG00000040174Alkbh39984.912ENSMLEG00000038324ALKBH39984.912Mandrillus_leucophaeus
ENSMUSG00000040174Alkbh39954.895ENSMAMG00000023051alkbh39554.895Mastacembelus_armatus
ENSMUSG00000040174Alkbh39954.386ENSMZEG00005011786alkbh39654.386Maylandia_zebra
ENSMUSG00000040174Alkbh37866.071ENSMGAG00000010479ALKBH39966.071Meleagris_gallopavo
ENSMUSG00000040174Alkbh310088.112ENSMAUG00000009317Alkbh310088.112Mesocricetus_auratus
ENSMUSG00000040174Alkbh39984.859ENSMICG00000014651ALKBH39984.859Microcebus_murinus
ENSMUSG00000040174Alkbh39986.713ENSMOCG00000012816Alkbh39986.713Microtus_ochrogaster
ENSMUSG00000040174Alkbh39948.264ENSMMOG00000020327alkbh39348.070Mola_mola
ENSMUSG00000040174Alkbh38478.008ENSMODG00000019863-9778.008Monodelphis_domestica
ENSMUSG00000040174Alkbh39954.225ENSMALG00000017888alkbh39554.225Monopterus_albus
ENSMUSG00000040174Alkbh310097.213MGP_CAROLIEiJ_G0023995Alkbh310097.213Mus_caroli
ENSMUSG00000040174Alkbh310096.040MGP_PahariEiJ_G0025431Alkbh310096.040Mus_pahari
ENSMUSG00000040174Alkbh3100100.000MGP_SPRETEiJ_G0024905Alkbh3100100.000Mus_spretus
ENSMUSG00000040174Alkbh39982.746ENSMPUG00000006151ALKBH39982.746Mustela_putorius_furo
ENSMUSG00000040174Alkbh39983.099ENSMLUG00000029289ALKBH39983.099Myotis_lucifugus
ENSMUSG00000040174Alkbh39986.219ENSNGAG00000004591Alkbh39986.219Nannospalax_galili
ENSMUSG00000040174Alkbh39950.877ENSNBRG00000016311alkbh39650.877Neolamprologus_brichardi
ENSMUSG00000040174Alkbh39984.211ENSNLEG00000027521ALKBH39984.211Nomascus_leucogenys
ENSMUSG00000040174Alkbh37380.476ENSMEUG00000007604ALKBH39980.476Notamacropus_eugenii
ENSMUSG00000040174Alkbh310081.469ENSOPRG00000006771ALKBH310081.469Ochotona_princeps
ENSMUSG00000040174Alkbh39983.217ENSODEG00000017204ALKBH39983.217Octodon_degus
ENSMUSG00000040174Alkbh39954.386ENSONIG00000015605alkbh39754.196Oreochromis_niloticus
ENSMUSG00000040174Alkbh39868.772ENSOANG00000009208ALKBH39768.772Ornithorhynchus_anatinus
ENSMUSG00000040174Alkbh310082.292ENSOCUG00000016359ALKBH310082.292Oryctolagus_cuniculus
ENSMUSG00000040174Alkbh39955.944ENSORLG00000001437alkbh39555.944Oryzias_latipes
ENSMUSG00000040174Alkbh39949.754ENSORLG00020002409alkbh39654.440Oryzias_latipes_hni
ENSMUSG00000040174Alkbh39955.944ENSORLG00015016266alkbh39555.944Oryzias_latipes_hsok
ENSMUSG00000040174Alkbh39955.594ENSOMEG00000003835alkbh39555.594Oryzias_melastigma
ENSMUSG00000040174Alkbh310085.315ENSOGAG00000009107ALKBH39785.315Otolemur_garnettii
ENSMUSG00000040174Alkbh39982.042ENSOARG00000001123ALKBH39982.042Ovis_aries
ENSMUSG00000040174Alkbh39985.965ENSPPAG00000028729ALKBH39985.965Pan_paniscus
ENSMUSG00000040174Alkbh39983.803ENSPPRG00000005278ALKBH39983.803Panthera_pardus
ENSMUSG00000040174Alkbh39982.042ENSPTIG00000019393ALKBH39982.042Panthera_tigris_altaica
ENSMUSG00000040174Alkbh39985.965ENSPTRG00000003523ALKBH39985.965Pan_troglodytes
ENSMUSG00000040174Alkbh39982.230ENSPANG00000003104ALKBH39982.230Papio_anubis
ENSMUSG00000040174Alkbh39854.064ENSPKIG00000021815alkbh39851.711Paramormyrops_kingsleyae
ENSMUSG00000040174Alkbh39963.500ENSPSIG00000011933ALKBH39667.249Pelodiscus_sinensis
ENSMUSG00000040174Alkbh39947.902ENSPMGG00000008862alkbh39347.902Periophthalmus_magnuspinnatus
ENSMUSG00000040174Alkbh39988.380ENSPEMG00000019372Alkbh39988.380Peromyscus_maniculatus_bairdii
ENSMUSG00000040174Alkbh39850.505ENSPMAG00000001119alkbh39953.543Petromyzon_marinus
ENSMUSG00000040174Alkbh39972.535ENSPCIG00000021794ALKBH39772.535Phascolarctos_cinereus
ENSMUSG00000040174Alkbh39954.545ENSPFOG00000002705alkbh39554.545Poecilia_formosa
ENSMUSG00000040174Alkbh39954.545ENSPLAG00000002355alkbh39554.545Poecilia_latipinna
ENSMUSG00000040174Alkbh39953.846ENSPMEG00000004476alkbh39553.846Poecilia_mexicana
ENSMUSG00000040174Alkbh39954.895ENSPREG00000005505alkbh39054.895Poecilia_reticulata
ENSMUSG00000040174Alkbh39983.860ENSPPYG00000003342ALKBH39783.860Pongo_abelii
ENSMUSG00000040174Alkbh39981.625ENSPCAG00000002955ALKBH39981.625Procavia_capensis
ENSMUSG00000040174Alkbh310085.315ENSPCOG00000020139ALKBH310085.315Propithecus_coquereli
ENSMUSG00000040174Alkbh310080.769ENSPVAG00000011569ALKBH310080.769Pteropus_vampyrus
ENSMUSG00000040174Alkbh39954.035ENSPNYG00000010362alkbh39654.035Pundamilia_nyererei
ENSMUSG00000040174Alkbh39957.394ENSPNAG00000015943alkbh39657.394Pygocentrus_nattereri
ENSMUSG00000040174Alkbh39994.386ENSRNOG00000021678Alkbh39794.386Rattus_norvegicus
ENSMUSG00000040174Alkbh39984.211ENSRBIG00000034161ALKBH39984.211Rhinopithecus_bieti
ENSMUSG00000040174Alkbh39984.211ENSRROG00000042173ALKBH39984.211Rhinopithecus_roxellana
ENSMUSG00000040174Alkbh39981.944ENSSBOG00000023947ALKBH39981.944Saimiri_boliviensis_boliviensis
ENSMUSG00000040174Alkbh39972.183ENSSHAG00000006189ALKBH39872.183Sarcophilus_harrisii
ENSMUSG00000040174Alkbh310053.497ENSSFOG00015003566alkbh39953.497Scleropages_formosus
ENSMUSG00000040174Alkbh39954.861ENSSMAG00000004404alkbh39554.861Scophthalmus_maximus
ENSMUSG00000040174Alkbh39952.465ENSSDUG00000000513alkbh39552.465Seriola_dumerili
ENSMUSG00000040174Alkbh39952.465ENSSLDG00000003080alkbh39552.465Seriola_lalandi_dorsalis
ENSMUSG00000040174Alkbh310067.128ENSSPUG00000005861ALKBH310067.128Sphenodon_punctatus
ENSMUSG00000040174Alkbh39955.326ENSSPAG00000020713alkbh39455.326Stegastes_partitus
ENSMUSG00000040174Alkbh39983.803ENSSSCG00000040937ALKBH39983.803Sus_scrofa
ENSMUSG00000040174Alkbh38667.886ENSTGUG00000010222ALKBH39967.886Taeniopygia_guttata
ENSMUSG00000040174Alkbh39951.049ENSTRUG00000021459alkbh38651.049Takifugu_rubripes
ENSMUSG00000040174Alkbh39953.873ENSTNIG00000010385alkbh39653.873Tetraodon_nigroviridis
ENSMUSG00000040174Alkbh310082.517ENSTBEG00000016697ALKBH310082.517Tupaia_belangeri
ENSMUSG00000040174Alkbh39881.495ENSTTRG00000005121ALKBH39981.495Tursiops_truncatus
ENSMUSG00000040174Alkbh39979.577ENSUAMG00000025129ALKBH39987.137Ursus_americanus
ENSMUSG00000040174Alkbh39982.394ENSUMAG00000015602ALKBH39982.394Ursus_maritimus
ENSMUSG00000040174Alkbh39983.099ENSVPAG00000000215ALKBH39983.099Vicugna_pacos
ENSMUSG00000040174Alkbh39982.042ENSVVUG00000017283ALKBH39882.332Vulpes_vulpes
ENSMUSG00000040174Alkbh39854.577ENSXETG00000022230alkbh39954.577Xenopus_tropicalis
ENSMUSG00000040174Alkbh35858.788ENSXCOG00000000737alkbh36558.788Xiphophorus_couchianus
ENSMUSG00000040174Alkbh39954.545ENSXMAG00000013123alkbh39554.545Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0004519endonuclease activity16174769.IDAFunction
GO:0004527exonuclease activity16174769.IDAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0005739mitochondrion-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0006281DNA repair-ISOProcess
GO:0006307DNA dealkylation involved in DNA repair21873635.IBAProcess
GO:0006307DNA dealkylation involved in DNA repair-ISOProcess
GO:0006974cellular response to DNA damage stimulus-IEAProcess
GO:0008198ferrous iron binding21873635.IBAFunction
GO:0008198ferrous iron binding-ISOFunction
GO:0008283cell proliferation-ISOProcess
GO:0016491oxidoreductase activity-IEAFunction
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors16174769.IDAFunction
GO:0035552oxidative single-stranded DNA demethylation21873635.IBAProcess
GO:0035552oxidative single-stranded DNA demethylation-ISOProcess
GO:0035553oxidative single-stranded RNA demethylation21873635.IBAProcess
GO:0035553oxidative single-stranded RNA demethylation-ISOProcess
GO:0043734DNA-N1-methyladenine dioxygenase activity21873635.IBAFunction
GO:0043734DNA-N1-methyladenine dioxygenase activity-ISOFunction
GO:0046872metal ion binding-IEAFunction
GO:0051213dioxygenase activity-IEAFunction
GO:0051747cytosine C-5 DNA demethylase activity16174769.IDAFunction
GO:0055114oxidation-reduction process-IEAProcess
GO:1990930RNA N1-methyladenosine dioxygenase activity21873635.IBAFunction
GO:1990930RNA N1-methyladenosine dioxygenase activity-ISOFunction

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us