EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000040356 (Gene tree)
Gene ID: 108077
Gene Symbol: Skiv2l
Alias: 4930534J06Rik|Ski2w
Full Name: superkiller viralicidic activity 2-like (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 10983 bases
Position: chr17:34839228-34850210
Accession: 1099835
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000036265	rRNA_proc-arch	PF13234.6	1.6e-41	1	1
ENSMUSP00000134209	rRNA_proc-arch	PF13234.6	1.3e-17	1	2
ENSMUSP00000134209	rRNA_proc-arch	PF13234.6	1.3e-17	2	2
ENSMUSP00000036265	DEAD	PF00270.29	2e-16	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174226	-	4119	-	-	- (aa)	-	-
ENSMUST00000172686	-	832	-	-	- (aa)	-	-
ENSMUST00000174887	-	3995	-	-	- (aa)	-	-
ENSMUST00000173305	-	458	-	-	- (aa)	-	-
ENSMUST00000173415	-	727	-	ENSMUSP00000134209	242 (aa)	-	G3UYT1
ENSMUST00000046022	-	3951	XM_017317205	ENSMUSP00000036265	1244 (aa)	XP_017172694	Q6NZR5
ENSMUST00000172803	-	462	-	-	- (aa)	-	-
ENSMUST00000173403	-	927	-	-	- (aa)	-	-
ENSMUST00000172878	-	817	-	-	- (aa)	-	-
ENSMUST00000172966	-	881	-	ENSMUSP00000134294	92 (aa)	-	G3UZ05
ENSMUST00000174363	-	4520	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000040356's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040356's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000040356	Skiv2l	76	37.279	ENSMUSG00000016018	Mtrex	88	37.279

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040356	Skiv2l	100	93.184	ENSG00000204351	SKIV2L	98	96.067	Homo_sapiens
ENSMUSG00000040356	Skiv2l	99	61.398	ENSAPOG00000008257	skiv2l	99	61.724	Acanthochromis_polyacanthus
ENSMUSG00000040356	Skiv2l	100	93.023	ENSAMEG00000002078	SKIV2L	100	93.023	Ailuropoda_melanoleuca
ENSMUSG00000040356	Skiv2l	99	60.225	ENSACIG00000016719	skiv2l	99	60.210	Amphilophus_citrinellus
ENSMUSG00000040356	Skiv2l	99	61.319	ENSAOCG00000017352	skiv2l	99	61.402	Amphiprion_ocellaris
ENSMUSG00000040356	Skiv2l	99	61.239	ENSAPEG00000001055	skiv2l	99	61.322	Amphiprion_percula
ENSMUSG00000040356	Skiv2l	99	60.974	ENSATEG00000007601	skiv2l	99	60.995	Anabas_testudineus
ENSMUSG00000040356	Skiv2l	99	66.039	ENSACAG00000011746	SKIV2L	98	66.215	Anolis_carolinensis
ENSMUSG00000040356	Skiv2l	100	93.585	ENSANAG00000037992	SKIV2L	100	93.585	Aotus_nancymaae
ENSMUSG00000040356	Skiv2l	99	61.606	ENSACLG00000006886	skiv2l	99	61.886	Astatotilapia_calliptera
ENSMUSG00000040356	Skiv2l	98	59.648	ENSAMXG00000011517	skiv2l	99	59.551	Astyanax_mexicanus
ENSMUSG00000040356	Skiv2l	100	93.344	ENSBTAG00000005587	SKIV2L	100	93.344	Bos_taurus
ENSMUSG00000040356	Skiv2l	95	39.406	WBGene00008502	skih-2	99	39.562	Caenorhabditis_elegans
ENSMUSG00000040356	Skiv2l	100	93.264	ENSCJAG00000002263	SKIV2L	100	93.264	Callithrix_jacchus
ENSMUSG00000040356	Skiv2l	100	92.702	ENSCAFG00000000679	SKIV2L	100	92.702	Canis_familiaris
ENSMUSG00000040356	Skiv2l	100	92.622	ENSCAFG00020000948	SKIV2L	100	92.622	Canis_lupus_dingo
ENSMUSG00000040356	Skiv2l	100	93.344	ENSCHIG00000012897	SKIV2L	100	93.344	Capra_hircus
ENSMUSG00000040356	Skiv2l	100	92.863	ENSTSYG00000012133	SKIV2L	100	92.863	Carlito_syrichta
ENSMUSG00000040356	Skiv2l	100	92.203	ENSCPOG00000001307	SKIV2L	100	92.203	Cavia_porcellus
ENSMUSG00000040356	Skiv2l	100	93.424	ENSCCAG00000026206	SKIV2L	100	93.424	Cebus_capucinus
ENSMUSG00000040356	Skiv2l	100	93.264	ENSCATG00000036901	SKIV2L	100	93.264	Cercocebus_atys
ENSMUSG00000040356	Skiv2l	100	92.622	ENSCLAG00000007678	SKIV2L	100	92.622	Chinchilla_lanigera
ENSMUSG00000040356	Skiv2l	100	93.184	ENSCSAG00000008988	SKIV2L	100	93.184	Chlorocebus_sabaeus
ENSMUSG00000040356	Skiv2l	87	64.327	ENSCPBG00000000343	SKIV2L	96	65.611	Chrysemys_picta_bellii
ENSMUSG00000040356	Skiv2l	94	50.803	ENSCING00000005576	-	99	50.719	Ciona_intestinalis
ENSMUSG00000040356	Skiv2l	99	93.419	ENSCANG00000039709	SKIV2L	100	93.419	Colobus_angolensis_palliatus
ENSMUSG00000040356	Skiv2l	100	95.338	ENSCGRG00001008385	Skiv2l	100	95.338	Cricetulus_griseus_chok1gshd
ENSMUSG00000040356	Skiv2l	99	60.960	ENSCSEG00000011326	skiv2l	98	61.196	Cynoglossus_semilaevis
ENSMUSG00000040356	Skiv2l	99	61.085	ENSCVAG00000003072	skiv2l	99	60.932	Cyprinodon_variegatus
ENSMUSG00000040356	Skiv2l	99	60.410	ENSDARG00000062206	skiv2l	99	60.352	Danio_rerio
ENSMUSG00000040356	Skiv2l	94	92.949	ENSDNOG00000037590	SKIV2L	100	86.869	Dasypus_novemcinctus
ENSMUSG00000040356	Skiv2l	93	44.454	FBgn0039117	tst	97	44.688	Drosophila_melanogaster
ENSMUSG00000040356	Skiv2l	100	76.173	ENSETEG00000009522	SKIV2L	68	92.811	Echinops_telfairi
ENSMUSG00000040356	Skiv2l	89	56.632	ENSEBUG00000013680	-	97	56.437	Eptatretus_burgeri
ENSMUSG00000040356	Skiv2l	93	94.062	ENSEASG00005015534	SKIV2L	99	94.062	Equus_asinus_asinus
ENSMUSG00000040356	Skiv2l	95	92.947	ENSECAG00000021823	SKIV2L	96	93.565	Equus_caballus
ENSMUSG00000040356	Skiv2l	93	73.745	ENSEEUG00000005049	SKIV2L	57	98.024	Erinaceus_europaeus
ENSMUSG00000040356	Skiv2l	99	59.905	ENSELUG00000000181	skiv2l	94	66.218	Esox_lucius
ENSMUSG00000040356	Skiv2l	100	93.184	ENSFCAG00000004519	SKIV2L	100	93.184	Felis_catus
ENSMUSG00000040356	Skiv2l	100	90.056	ENSFDAG00000009438	SKIV2L	100	90.297	Fukomys_damarensis
ENSMUSG00000040356	Skiv2l	99	61.142	ENSFHEG00000008853	skiv2l	99	61.334	Fundulus_heteroclitus
ENSMUSG00000040356	Skiv2l	99	58.978	ENSGMOG00000005926	skiv2l	98	59.058	Gadus_morhua
ENSMUSG00000040356	Skiv2l	100	39.928	ENSGALG00000035499	SKIV2L	98	61.364	Gallus_gallus
ENSMUSG00000040356	Skiv2l	99	61.490	ENSGAFG00000002382	skiv2l	99	61.526	Gambusia_affinis
ENSMUSG00000040356	Skiv2l	99	60.254	ENSGACG00000002927	skiv2l	98	60.694	Gasterosteus_aculeatus
ENSMUSG00000040356	Skiv2l	100	93.023	ENSGGOG00000002270	SKIV2L	100	93.023	Gorilla_gorilla
ENSMUSG00000040356	Skiv2l	99	61.526	ENSHBUG00000000726	skiv2l	99	61.805	Haplochromis_burtoni
ENSMUSG00000040356	Skiv2l	100	91.033	ENSHGLG00000016596	SKIV2L	100	91.353	Heterocephalus_glaber_female
ENSMUSG00000040356	Skiv2l	100	88.391	ENSHGLG00100014161	SKIV2L	100	88.711	Heterocephalus_glaber_male
ENSMUSG00000040356	Skiv2l	98	59.495	ENSHCOG00000007191	skiv2l	100	59.495	Hippocampus_comes
ENSMUSG00000040356	Skiv2l	99	60.032	ENSIPUG00000016263	skiv2l	100	60.385	Ictalurus_punctatus
ENSMUSG00000040356	Skiv2l	100	94.387	ENSSTOG00000014596	SKIV2L	100	94.387	Ictidomys_tridecemlineatus
ENSMUSG00000040356	Skiv2l	71	60.192	ENSLACG00000002986	-	73	61.307	Latimeria_chalumnae
ENSMUSG00000040356	Skiv2l	100	92.622	ENSLAFG00000014231	SKIV2L	100	92.622	Loxodonta_africana
ENSMUSG00000040356	Skiv2l	100	93.504	ENSMFAG00000034235	SKIV2L	100	93.504	Macaca_fascicularis
ENSMUSG00000040356	Skiv2l	100	93.424	ENSMMUG00000000736	SKIV2L	100	93.424	Macaca_mulatta
ENSMUSG00000040356	Skiv2l	100	93.424	ENSMNEG00000044474	SKIV2L	100	93.424	Macaca_nemestrina
ENSMUSG00000040356	Skiv2l	100	93.264	ENSMLEG00000030512	SKIV2L	100	93.264	Mandrillus_leucophaeus
ENSMUSG00000040356	Skiv2l	99	60.970	ENSMAMG00000002927	skiv2l	99	60.919	Mastacembelus_armatus
ENSMUSG00000040356	Skiv2l	99	61.447	ENSMZEG00005026415	skiv2l	99	61.724	Maylandia_zebra
ENSMUSG00000040356	Skiv2l	70	51.688	ENSMGAG00000001320	SKIV2L	97	51.688	Meleagris_gallopavo
ENSMUSG00000040356	Skiv2l	100	94.458	ENSMAUG00000018613	Skiv2l	100	94.699	Mesocricetus_auratus
ENSMUSG00000040356	Skiv2l	100	93.665	ENSMICG00000046331	SKIV2L	100	93.665	Microcebus_murinus
ENSMUSG00000040356	Skiv2l	100	93.810	ENSMOCG00000014240	Skiv2l	100	93.810	Microtus_ochrogaster
ENSMUSG00000040356	Skiv2l	99	61.334	ENSMMOG00000014547	skiv2l	98	61.269	Mola_mola
ENSMUSG00000040356	Skiv2l	100	86.960	ENSMODG00000015052	SKIV2L	100	86.960	Monodelphis_domestica
ENSMUSG00000040356	Skiv2l	99	59.726	ENSMALG00000010535	skiv2l	98	59.869	Monopterus_albus
ENSMUSG00000040356	Skiv2l	100	99.587	MGP_CAROLIEiJ_G0021477	Skiv2l	100	99.587	Mus_caroli
ENSMUSG00000040356	Skiv2l	100	98.553	MGP_PahariEiJ_G0020472	Skiv2l	100	98.553	Mus_pahari
ENSMUSG00000040356	Skiv2l	100	99.598	MGP_SPRETEiJ_G0022382	Skiv2l	100	99.598	Mus_spretus
ENSMUSG00000040356	Skiv2l	100	92.783	ENSMPUG00000010567	SKIV2L	100	92.783	Mustela_putorius_furo
ENSMUSG00000040356	Skiv2l	100	91.339	ENSMLUG00000000628	SKIV2L	100	91.339	Myotis_lucifugus
ENSMUSG00000040356	Skiv2l	99	60.911	ENSNBRG00000018650	skiv2l	98	61.066	Neolamprologus_brichardi
ENSMUSG00000040356	Skiv2l	98	90.391	ENSNLEG00000006451	SKIV2L	99	90.472	Nomascus_leucogenys
ENSMUSG00000040356	Skiv2l	78	92.920	ENSMEUG00000006072	SKIV2L	78	92.920	Notamacropus_eugenii
ENSMUSG00000040356	Skiv2l	100	93.023	ENSOPRG00000003972	SKIV2L	100	93.023	Ochotona_princeps
ENSMUSG00000040356	Skiv2l	100	91.179	ENSODEG00000017516	SKIV2L	100	91.179	Octodon_degus
ENSMUSG00000040356	Skiv2l	99	62.240	ENSONIG00000013500	skiv2l	99	62.530	Oreochromis_niloticus
ENSMUSG00000040356	Skiv2l	100	94.146	ENSOCUG00000007019	SKIV2L	100	94.146	Oryctolagus_cuniculus
ENSMUSG00000040356	Skiv2l	99	61.746	ENSORLG00000002021	skiv2l	99	61.878	Oryzias_latipes
ENSMUSG00000040356	Skiv2l	99	61.667	ENSORLG00020009462	skiv2l	99	61.798	Oryzias_latipes_hni
ENSMUSG00000040356	Skiv2l	99	61.429	ENSORLG00015016750	skiv2l	99	61.557	Oryzias_latipes_hsok
ENSMUSG00000040356	Skiv2l	99	62.460	ENSOMEG00000008531	skiv2l	99	62.177	Oryzias_melastigma
ENSMUSG00000040356	Skiv2l	100	93.424	ENSOGAG00000009578	SKIV2L	100	93.424	Otolemur_garnettii
ENSMUSG00000040356	Skiv2l	74	69.767	ENSOARG00000001720	-	70	86.620	Ovis_aries
ENSMUSG00000040356	Skiv2l	100	87.793	ENSOARG00000002411	-	100	87.793	Ovis_aries
ENSMUSG00000040356	Skiv2l	98	92.308	ENSPPAG00000040211	SKIV2L	99	92.308	Pan_paniscus
ENSMUSG00000040356	Skiv2l	100	93.264	ENSPPRG00000005017	SKIV2L	100	93.264	Panthera_pardus
ENSMUSG00000040356	Skiv2l	100	92.943	ENSPTIG00000021656	SKIV2L	100	92.943	Panthera_tigris_altaica
ENSMUSG00000040356	Skiv2l	100	93.184	ENSPTRG00000017997	SKIV2L	100	93.184	Pan_troglodytes
ENSMUSG00000040356	Skiv2l	98	92.220	ENSPANG00000011501	SKIV2L	99	92.220	Papio_anubis
ENSMUSG00000040356	Skiv2l	99	60.063	ENSPKIG00000011876	skiv2l	94	66.321	Paramormyrops_kingsleyae
ENSMUSG00000040356	Skiv2l	99	59.823	ENSPMGG00000019707	skiv2l	98	60.700	Periophthalmus_magnuspinnatus
ENSMUSG00000040356	Skiv2l	100	95.338	ENSPEMG00000019001	Skiv2l	100	95.338	Peromyscus_maniculatus_bairdii
ENSMUSG00000040356	Skiv2l	100	86.890	ENSPCIG00000018792	SKIV2L	100	86.890	Phascolarctos_cinereus
ENSMUSG00000040356	Skiv2l	99	61.776	ENSPFOG00000002424	skiv2l	99	61.817	Poecilia_formosa
ENSMUSG00000040356	Skiv2l	99	61.905	ENSPLAG00000018304	skiv2l	99	61.947	Poecilia_latipinna
ENSMUSG00000040356	Skiv2l	99	61.697	ENSPMEG00000006997	skiv2l	99	61.736	Poecilia_mexicana
ENSMUSG00000040356	Skiv2l	99	60.209	ENSPREG00000002277	skiv2l	96	66.425	Poecilia_reticulata
ENSMUSG00000040356	Skiv2l	100	92.702	ENSPPYG00000016472	SKIV2L	100	92.702	Pongo_abelii
ENSMUSG00000040356	Skiv2l	100	75.451	ENSPCAG00000004178	SKIV2L	77	93.196	Procavia_capensis
ENSMUSG00000040356	Skiv2l	100	94.387	ENSPCOG00000010308	SKIV2L	100	94.387	Propithecus_coquereli
ENSMUSG00000040356	Skiv2l	100	91.500	ENSPVAG00000005136	SKIV2L	100	91.500	Pteropus_vampyrus
ENSMUSG00000040356	Skiv2l	99	59.694	ENSPNYG00000017853	skiv2l	97	66.667	Pundamilia_nyererei
ENSMUSG00000040356	Skiv2l	98	60.978	ENSPNAG00000011823	skiv2l	99	61.236	Pygocentrus_nattereri
ENSMUSG00000040356	Skiv2l	100	98.392	ENSRNOG00000000421	Skiv2l	100	98.392	Rattus_norvegicus
ENSMUSG00000040356	Skiv2l	98	90.696	ENSRBIG00000035485	SKIV2L	99	90.696	Rhinopithecus_bieti
ENSMUSG00000040356	Skiv2l	100	93.184	ENSRROG00000036429	SKIV2L	100	93.184	Rhinopithecus_roxellana
ENSMUSG00000040356	Skiv2l	93	38.401	YLR398C	-	95	38.163	Saccharomyces_cerevisiae
ENSMUSG00000040356	Skiv2l	100	93.665	ENSSBOG00000027920	SKIV2L	100	93.665	Saimiri_boliviensis_boliviensis
ENSMUSG00000040356	Skiv2l	100	86.560	ENSSHAG00000008963	SKIV2L	100	85.520	Sarcophilus_harrisii
ENSMUSG00000040356	Skiv2l	99	61.072	ENSSFOG00015016930	skiv2l	99	61.182	Scleropages_formosus
ENSMUSG00000040356	Skiv2l	99	61.040	ENSSMAG00000020185	skiv2l	99	61.013	Scophthalmus_maximus
ENSMUSG00000040356	Skiv2l	99	61.459	ENSSDUG00000019977	skiv2l	99	61.384	Seriola_dumerili
ENSMUSG00000040356	Skiv2l	99	59.920	ENSSLDG00000024382	skiv2l	98	60.179	Seriola_lalandi_dorsalis
ENSMUSG00000040356	Skiv2l	99	62.549	ENSSPUG00000012945	SKIV2L	98	62.776	Sphenodon_punctatus
ENSMUSG00000040356	Skiv2l	94	61.158	ENSSPAG00000012904	skiv2l	98	61.003	Stegastes_partitus
ENSMUSG00000040356	Skiv2l	100	94.066	ENSSSCG00000001424	SKIV2L	100	94.066	Sus_scrofa
ENSMUSG00000040356	Skiv2l	69	66.274	ENSTRUG00000000966	skiv2l	100	55.288	Takifugu_rubripes
ENSMUSG00000040356	Skiv2l	99	59.888	ENSTNIG00000004382	skiv2l	98	60.146	Tetraodon_nigroviridis
ENSMUSG00000040356	Skiv2l	94	93.015	ENSTBEG00000003462	SKIV2L	94	93.015	Tupaia_belangeri
ENSMUSG00000040356	Skiv2l	100	87.650	ENSTTRG00000005931	SKIV2L	100	87.650	Tursiops_truncatus
ENSMUSG00000040356	Skiv2l	100	93.424	ENSUAMG00000024336	SKIV2L	100	93.424	Ursus_americanus
ENSMUSG00000040356	Skiv2l	93	93.718	ENSUMAG00000012666	SKIV2L	99	93.718	Ursus_maritimus
ENSMUSG00000040356	Skiv2l	98	92.997	ENSVVUG00000022807	SKIV2L	98	92.997	Vulpes_vulpes
ENSMUSG00000040356	Skiv2l	100	58.459	ENSXETG00000010932	skiv2l	100	58.492	Xenopus_tropicalis
ENSMUSG00000040356	Skiv2l	99	61.656	ENSXCOG00000019517	skiv2l	96	61.738	Xiphophorus_couchianus
ENSMUSG00000040356	Skiv2l	99	61.063	ENSXMAG00000014079	skiv2l	99	61.093	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0055087	Ski complex	21873635.	IBA	Component
GO:0055087	Ski complex	-	ISO	Component
GO:0070478	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	21873635.	IBA	Process