EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000208369	-	2177	-	ENSMUSP00000146600	329 (aa)	-	A0A140LHY5
ENSMUST00000149486	-	867	-	ENSMUSP00000122575	289 (aa)	-	A2A653
ENSMUST00000057892	-	11488	XM_006532681	ENSMUSP00000052303	2921 (aa)	XP_006532744	E9Q6A7
ENSMUST00000138443	-	1061	-	-	- (aa)	-	-
ENSMUST00000106762	-	11847	XM_006532682	ENSMUSP00000102373	2973 (aa)	XP_006532745	A2A655
ENSMUST00000133317	-	780	-	ENSMUSP00000118875	158 (aa)	-	A2A652
ENSMUST00000147816	-	1433	-	-	- (aa)	-	-
ENSMUST00000106763	-	12036	XM_006532675	ENSMUSP00000102374	3036 (aa)	XP_006532738	A2A654

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040481	Bptf	96	92.058	ENSG00000171634	BPTF	94	89.663	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0001892	embryonic placenta development	18794365.	IMP	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006357	regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0007420	brain development	-	ISO	Process
GO:0007492	endoderm development	18974875.	IMP	Process
GO:0008094	DNA-dependent ATPase activity	-	ISO	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0009952	anterior/posterior pattern specification	18794365.18974875.	IMP	Process
GO:0016589	NURF complex	-	ISO	Component
GO:0030425	dendrite	-	ISO	Component
GO:0043005	neuron projection	-	ISO	Component
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0044297	cell body	-	ISO	Component
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048188	Set1C/COMPASS complex	-	ISO	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component