EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000111338	-	6665	XM_006500342	ENSMUSP00000106970	2032 (aa)	XP_006500405	K3W4R5
ENSMUST00000046769	-	6511	-	ENSMUSP00000046263	2011 (aa)	-	A0A0R4J0K2
ENSMUST00000123253	-	696	-	-	- (aa)	-	-
ENSMUST00000099716	-	6574	XM_006500343	ENSMUSP00000097303	2032 (aa)	XP_006500406	K3W4R5
ENSMUST00000111337	-	6384	-	ENSMUSP00000106969	1972 (aa)	-	Z4YL78
ENSMUST00000139433	-	2226	-	-	- (aa)	-	-
ENSMUST00000147809	-	1272	-	-	- (aa)	-	-
ENSMUST00000129118	-	718	-	-	- (aa)	-	-
ENSMUST00000133633	-	3403	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040549	Ckap5	90	46.379	FBgn0027948	msps	89	46.091	Drosophila_melanogaster
ENSMUSG00000040549	Ckap5	100	94.980	ENSG00000175216	CKAP5	100	98.013	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000776	kinetochore	21873635.	IBA	Component
GO:0000776	kinetochore	-	ISO	Component
GO:0000922	spindle pole	21873635.	IBA	Component
GO:0000922	spindle pole	-	ISO	Component
GO:0000930	gamma-tubulin complex	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005813	centrosome	21873635.	IBA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0007049	cell cycle	-	IEA	Process
GO:0007051	spindle organization	21873635.	IBA	Process
GO:0007051	spindle organization	-	ISO	Process
GO:0007098	centrosome cycle	-	ISO	Process
GO:0008017	microtubule binding	-	ISO	Function
GO:0030951	establishment or maintenance of microtubule cytoskeleton polarity	21873635.	IBA	Process
GO:0030951	establishment or maintenance of microtubule cytoskeleton polarity	-	ISO	Process
GO:0032991	protein-containing complex	18468998.	ISO	Component
GO:0035371	microtubule plus-end	21873635.	IBA	Component
GO:0035371	microtubule plus-end	-	ISO	Component
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0046785	microtubule polymerization	21873635.	IBA	Process
GO:0051010	microtubule plus-end binding	21873635.	IBA	Function
GO:0051298	centrosome duplication	21873635.	IBA	Process
GO:0051301	cell division	-	IEA	Process