EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000040613 (Gene tree)
Gene ID: 11810
Gene Symbol: Apobec1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme%2C catalytic polypeptide 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 24653 bases
Position: chr6:122577792-122602444
Accession: 103298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108204	APOBEC_N	PF08210.11	1.1e-29	1	1
ENSMUSP00000108205	APOBEC_N	PF08210.11	1.1e-29	1	1
ENSMUSP00000108206	APOBEC_N	PF08210.11	1.1e-29	1	1
ENSMUSP00000145417	APOBEC_N	PF08210.11	5.4e-17	1	1
ENSMUSP00000145154	APOBEC_N	PF08210.11	4e-13	1	1
ENSMUSP00000108204	APOBEC_C	PF05240.14	2.3e-22	1	1
ENSMUSP00000108205	APOBEC_C	PF05240.14	2.3e-22	1	1
ENSMUSP00000108206	APOBEC_C	PF05240.14	2.3e-22	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000203197	-	372	-	ENSMUSP00000144996	43 (aa)	-	A0A0N4SV86
ENSMUST00000203204	-	775	-	ENSMUSP00000145154	113 (aa)	-	A0A0N4SVL6
ENSMUST00000112586	-	2265	-	ENSMUSP00000108205	229 (aa)	-	P51908
ENSMUST00000112587	-	2072	XM_006505401	ENSMUSP00000108206	229 (aa)	XP_006505464	P51908
ENSMUST00000112585	-	2127	-	ENSMUSP00000108204	229 (aa)	-	P51908
ENSMUST00000204035	-	520	-	-	- (aa)	-	-
ENSMUST00000143356	-	560	-	-	- (aa)	-	-
ENSMUST00000147760	-	360	-	ENSMUSP00000116238	25 (aa)	-	D3Z675
ENSMUST00000203309	-	666	-	ENSMUSP00000145417	121 (aa)	-	A0A0N4SW85

Gene Model

Click here to download ENSMUSG00000040613's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040613's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000040613	Apobec1	56	39.706	ENSMUSG00000040627	Aicda	53	41.509
ENSMUSG00000040613	Apobec1	74	35.789	ENSMUSG00000009585	Apobec3	96	35.366

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040613	Apobec1	99	71.429	ENSG00000111701	APOBEC1	97	71.053	Homo_sapiens
ENSMUSG00000040613	Apobec1	99	67.982	ENSAMEG00000007098	APOBEC1	97	67.982	Ailuropoda_melanoleuca
ENSMUSG00000040613	Apobec1	86	50.476	ENSACAG00000028578	-	93	44.444	Anolis_carolinensis
ENSMUSG00000040613	Apobec1	99	69.298	ENSANAG00000027743	APOBEC1	92	69.298	Aotus_nancymaae
ENSMUSG00000040613	Apobec1	99	67.105	ENSBTAG00000014683	APOBEC1	97	67.105	Bos_taurus
ENSMUSG00000040613	Apobec1	93	69.014	ENSCJAG00000005398	APOBEC1	96	69.014	Callithrix_jacchus
ENSMUSG00000040613	Apobec1	99	71.053	ENSCAFG00000013901	APOBEC1	97	71.053	Canis_familiaris
ENSMUSG00000040613	Apobec1	95	70.642	ENSCAFG00020003511	APOBEC1	91	70.642	Canis_lupus_dingo
ENSMUSG00000040613	Apobec1	99	65.351	ENSCHIG00000011898	APOBEC1	95	65.351	Capra_hircus
ENSMUSG00000040613	Apobec1	94	73.585	ENSTSYG00000029141	APOBEC1	100	71.631	Carlito_syrichta
ENSMUSG00000040613	Apobec1	93	63.380	ENSCAPG00000015882	-	99	63.380	Cavia_aperea
ENSMUSG00000040613	Apobec1	99	63.333	ENSCPOG00000033068	APOBEC1	97	62.281	Cavia_porcellus
ENSMUSG00000040613	Apobec1	99	69.737	ENSCCAG00000022258	APOBEC1	97	69.737	Cebus_capucinus
ENSMUSG00000040613	Apobec1	99	70.614	ENSCATG00000021613	APOBEC1	92	70.614	Cercocebus_atys
ENSMUSG00000040613	Apobec1	99	62.719	ENSCLAG00000014645	APOBEC1	99	62.719	Chinchilla_lanigera
ENSMUSG00000040613	Apobec1	78	70.391	ENSCSAG00000009817	APOBEC1	94	70.391	Chlorocebus_sabaeus
ENSMUSG00000040613	Apobec1	95	39.655	ENSCPBG00000014327	-	83	37.850	Chrysemys_picta_bellii
ENSMUSG00000040613	Apobec1	86	45.714	ENSCPBG00000014328	-	89	42.365	Chrysemys_picta_bellii
ENSMUSG00000040613	Apobec1	88	53.000	ENSCPBG00000014329	-	54	46.429	Chrysemys_picta_bellii
ENSMUSG00000040613	Apobec1	89	40.179	ENSCPBG00000017398	-	79	43.017	Chrysemys_picta_bellii
ENSMUSG00000040613	Apobec1	98	49.167	ENSCPBG00000014335	-	76	49.733	Chrysemys_picta_bellii
ENSMUSG00000040613	Apobec1	86	48.571	ENSCPBG00000014331	-	84	42.857	Chrysemys_picta_bellii
ENSMUSG00000040613	Apobec1	97	70.721	ENSCANG00000038359	APOBEC1	97	70.721	Colobus_angolensis_palliatus
ENSMUSG00000040613	Apobec1	100	83.471	ENSCGRG00001011130	Apobec1	99	82.895	Cricetulus_griseus_chok1gshd
ENSMUSG00000040613	Apobec1	100	83.471	ENSCGRG00000008644	Apobec1	99	82.895	Cricetulus_griseus_crigri
ENSMUSG00000040613	Apobec1	100	71.074	ENSDNOG00000010926	APOBEC1	97	69.737	Dasypus_novemcinctus
ENSMUSG00000040613	Apobec1	93	63.551	ENSDORG00000023717	Apobec1	100	63.551	Dipodomys_ordii
ENSMUSG00000040613	Apobec1	99	67.686	ENSETEG00000004867	APOBEC1	97	67.686	Echinops_telfairi
ENSMUSG00000040613	Apobec1	99	71.053	ENSEASG00005015951	APOBEC1	96	71.053	Equus_asinus_asinus
ENSMUSG00000040613	Apobec1	79	70.718	ENSECAG00000017163	APOBEC1	95	70.718	Equus_caballus
ENSMUSG00000040613	Apobec1	88	64.151	ENSEEUG00000007530	-	97	50.980	Erinaceus_europaeus
ENSMUSG00000040613	Apobec1	88	65.421	ENSEEUG00000009112	-	92	62.802	Erinaceus_europaeus
ENSMUSG00000040613	Apobec1	99	71.429	ENSFCAG00000009350	APOBEC1	97	71.053	Felis_catus
ENSMUSG00000040613	Apobec1	87	49.524	ENSFALG00000007257	-	70	51.408	Ficedula_albicollis
ENSMUSG00000040613	Apobec1	87	55.000	ENSFDAG00000018470	APOBEC1	96	55.000	Fukomys_damarensis
ENSMUSG00000040613	Apobec1	86	52.041	ENSGAGG00000004947	-	86	47.399	Gopherus_agassizii
ENSMUSG00000040613	Apobec1	86	40.952	ENSGAGG00000021744	-	71	43.889	Gopherus_agassizii
ENSMUSG00000040613	Apobec1	86	41.905	ENSGAGG00000021745	-	64	42.529	Gopherus_agassizii
ENSMUSG00000040613	Apobec1	90	50.000	ENSGAGG00000011837	-	84	55.652	Gopherus_agassizii
ENSMUSG00000040613	Apobec1	86	40.000	ENSGAGG00000006624	-	66	42.077	Gopherus_agassizii
ENSMUSG00000040613	Apobec1	99	60.833	ENSHGLG00000001495	APOBEC1	97	60.088	Heterocephalus_glaber_female
ENSMUSG00000040613	Apobec1	99	59.211	ENSHGLG00100002187	APOBEC1	97	59.211	Heterocephalus_glaber_male
ENSMUSG00000040613	Apobec1	88	70.755	ENSSTOG00000021971	APOBEC1	99	72.165	Ictidomys_tridecemlineatus
ENSMUSG00000040613	Apobec1	99	70.175	ENSJJAG00000022108	Apobec1	99	70.175	Jaculus_jaculus
ENSMUSG00000040613	Apobec1	94	69.767	ENSLAFG00000030837	APOBEC1	96	69.767	Loxodonta_africana
ENSMUSG00000040613	Apobec1	99	70.614	ENSMFAG00000000277	APOBEC1	97	70.614	Macaca_fascicularis
ENSMUSG00000040613	Apobec1	99	70.175	ENSMNEG00000029670	APOBEC1	97	70.175	Macaca_nemestrina
ENSMUSG00000040613	Apobec1	99	70.614	ENSMLEG00000036301	APOBEC1	97	70.614	Mandrillus_leucophaeus
ENSMUSG00000040613	Apobec1	97	80.995	ENSMAUG00000022167	Apobec1	99	80.995	Mesocricetus_auratus
ENSMUSG00000040613	Apobec1	99	70.614	ENSMICG00000043645	APOBEC1	97	70.614	Microcebus_murinus
ENSMUSG00000040613	Apobec1	100	82.301	ENSMOCG00000016170	-	100	82.301	Microtus_ochrogaster
ENSMUSG00000040613	Apobec1	99	66.071	ENSMODG00000018004	APOBEC1	97	64.912	Monodelphis_domestica
ENSMUSG00000040613	Apobec1	100	95.197	MGP_PahariEiJ_G0022580	-	100	95.197	Mus_pahari
ENSMUSG00000040613	Apobec1	100	100.000	MGP_SPRETEiJ_G0029857	Apobec1	100	100.000	Mus_spretus
ENSMUSG00000040613	Apobec1	99	71.429	ENSMPUG00000017532	APOBEC1	97	69.737	Mustela_putorius_furo
ENSMUSG00000040613	Apobec1	99	75.877	ENSNGAG00000022607	Apobec1	99	75.877	Nannospalax_galili
ENSMUSG00000040613	Apobec1	99	70.175	ENSNLEG00000005342	APOBEC1	97	70.175	Nomascus_leucogenys
ENSMUSG00000040613	Apobec1	100	62.832	ENSMEUG00000013406	APOBEC1	97	60.526	Notamacropus_eugenii
ENSMUSG00000040613	Apobec1	95	58.261	ENSOPRG00000009508	-	100	56.906	Ochotona_princeps
ENSMUSG00000040613	Apobec1	86	61.856	ENSODEG00000001157	-	99	61.856	Octodon_degus
ENSMUSG00000040613	Apobec1	99	70.536	ENSOCUG00000025736	APOBEC1	85	68.860	Oryctolagus_cuniculus
ENSMUSG00000040613	Apobec1	99	70.614	ENSOGAG00000026415	APOBEC1	97	70.614	Otolemur_garnettii
ENSMUSG00000040613	Apobec1	100	64.463	ENSOARG00000002072	APOBEC1	95	65.351	Ovis_aries
ENSMUSG00000040613	Apobec1	99	65.351	ENSPPAG00000027657	APOBEC1	96	65.351	Pan_paniscus
ENSMUSG00000040613	Apobec1	99	71.491	ENSPPRG00000012182	APOBEC1	97	71.491	Panthera_pardus
ENSMUSG00000040613	Apobec1	99	71.491	ENSPTIG00000020280	APOBEC1	97	71.491	Panthera_tigris_altaica
ENSMUSG00000040613	Apobec1	99	70.614	ENSPTRG00000004614	APOBEC1	97	70.614	Pan_troglodytes
ENSMUSG00000040613	Apobec1	99	71.053	ENSPANG00000021027	APOBEC1	97	71.053	Papio_anubis
ENSMUSG00000040613	Apobec1	98	38.333	ENSPSIG00000012568	-	81	42.473	Pelodiscus_sinensis
ENSMUSG00000040613	Apobec1	50	53.704	ENSPSIG00000012791	-	72	48.624	Pelodiscus_sinensis
ENSMUSG00000040613	Apobec1	100	82.645	ENSPEMG00000023841	Apobec1	99	83.333	Peromyscus_maniculatus_bairdii
ENSMUSG00000040613	Apobec1	99	66.071	ENSPCIG00000023973	APOBEC1	97	64.912	Phascolarctos_cinereus
ENSMUSG00000040613	Apobec1	99	70.175	ENSPPYG00000004228	APOBEC1	92	70.175	Pongo_abelii
ENSMUSG00000040613	Apobec1	99	71.429	ENSPCAG00000008733	APOBEC1	100	68.984	Procavia_capensis
ENSMUSG00000040613	Apobec1	93	70.561	ENSPCOG00000013957	APOBEC1	95	70.561	Propithecus_coquereli
ENSMUSG00000040613	Apobec1	99	68.750	ENSPVAG00000010709	APOBEC1	97	53.947	Pteropus_vampyrus
ENSMUSG00000040613	Apobec1	100	94.215	ENSRNOG00000015411	Apobec1	100	91.703	Rattus_norvegicus
ENSMUSG00000040613	Apobec1	99	70.175	ENSRBIG00000031161	APOBEC1	97	70.175	Rhinopithecus_bieti
ENSMUSG00000040613	Apobec1	99	70.175	ENSRROG00000033576	APOBEC1	97	70.175	Rhinopithecus_roxellana
ENSMUSG00000040613	Apobec1	87	69.388	ENSSBOG00000030587	APOBEC1	98	69.942	Saimiri_boliviensis_boliviensis
ENSMUSG00000040613	Apobec1	95	63.303	ENSSHAG00000008925	APOBEC1	96	63.303	Sarcophilus_harrisii
ENSMUSG00000040613	Apobec1	87	69.524	ENSSARG00000011972	-	98	69.767	Sorex_araneus
ENSMUSG00000040613	Apobec1	87	65.714	ENSSARG00000000032	-	100	63.953	Sorex_araneus
ENSMUSG00000040613	Apobec1	91	46.903	ENSSPUG00000009044	-	79	46.411	Sphenodon_punctatus
ENSMUSG00000040613	Apobec1	99	70.614	ENSSSCG00000000668	APOBEC1	97	70.614	Sus_scrofa
ENSMUSG00000040613	Apobec1	88	50.467	ENSTGUG00000013118	-	100	54.110	Taeniopygia_guttata
ENSMUSG00000040613	Apobec1	93	69.014	ENSTBEG00000010043	APOBEC1	90	69.014	Tupaia_belangeri
ENSMUSG00000040613	Apobec1	100	63.717	ENSTTRG00000014015	APOBEC1	100	66.845	Tursiops_truncatus
ENSMUSG00000040613	Apobec1	99	67.982	ENSUAMG00000011636	APOBEC1	93	67.982	Ursus_americanus
ENSMUSG00000040613	Apobec1	99	67.982	ENSUMAG00000016552	APOBEC1	93	67.982	Ursus_maritimus
ENSMUSG00000040613	Apobec1	99	68.750	ENSVPAG00000001343	APOBEC1	97	66.667	Vicugna_pacos
ENSMUSG00000040613	Apobec1	99	71.053	ENSVVUG00000010522	APOBEC1	97	71.053	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004126	cytidine deaminase activity	21873635.	IBA	Function
GO:0004126	cytidine deaminase activity	-	ISO	Function
GO:0004131	cytosine deaminase activity	-	ISO	Function
GO:0005515	protein binding	24916387.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006641	triglyceride metabolic process	9240444.	IGI	Process
GO:0006970	response to osmotic stress	-	ISO	Process
GO:0008047	enzyme activator activity	-	ISO	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010332	response to gamma radiation	15480992.	IMP	Process
GO:0016554	cytidine to uridine editing	21873635.	IBA	Process
GO:0016554	cytidine to uridine editing	24916387.	IGI	Process
GO:0016554	cytidine to uridine editing	8692961.	IMP	Process
GO:0016554	cytidine to uridine editing	-	ISO	Process
GO:0016556	mRNA modification	10403781.	IDA	Process
GO:0016556	mRNA modification	8626621.8692961.9240444.	IMP	Process
GO:0016556	mRNA modification	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0017091	AU-rich element binding	15480992.	IDA	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0042127	regulation of cell proliferation	17875695.	IGI	Process
GO:0042157	lipoprotein metabolic process	8692961.	IMP	Process
GO:0042158	lipoprotein biosynthetic process	13130124.	IGI	Process
GO:0042493	response to drug	-	ISO	Process
GO:0042953	lipoprotein transport	13130124.	IGI	Process
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0045471	response to ethanol	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048255	mRNA stabilization	15480992.	IDA	Process
GO:0051592	response to calcium ion	-	ISO	Process
GO:0051607	defense response to virus	-	ISO	Process
GO:0070383	DNA cytosine deamination	-	ISO	Process
GO:0080111	DNA demethylation	21873635.	IBA	Process
GO:0080111	DNA demethylation	21496894.	IDA	Process
GO:0090209	negative regulation of triglyceride metabolic process	9240444.	IGI	Process
GO:0090310	negative regulation of methylation-dependent chromatin silencing	21496894.	IMP	Process
GO:0090366	positive regulation of mRNA modification	-	ISO	Process