EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000040667 (Gene tree)
Gene ID: 19069
Gene Symbol: Nup88
Alias: Nup84|Prei2
Full Name: nucleoporin 88
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 26916
Position: chr11: 70943058-70969973
Accession: 104900
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000035283	-	2450	-	ENSMUSP00000048101	753 (aa)	-	Q8CEC0
ENSMUST00000178369	-	515	-	-	- (aa)	-	-
ENSMUST00000180225	-	1755	-	-	- (aa)	-	-
ENSMUST00000141179	-	649	-	-	- (aa)	-	-
ENSMUST00000148168	-	3000	-	-	- (aa)	-	-
ENSMUST00000123917	-	516	-	-	- (aa)	-	-
ENSMUST00000145336	-	507	-	-	- (aa)	-	-
ENSMUST00000108530	-	2389	-	ENSMUSP00000104170	742 (aa)	-	Q8CEC0
ENSMUST00000108531	-	2453	-	ENSMUSP00000104171	747 (aa)	-	Q8CEC0
ENSMUST00000123192	-	2730	-	-	- (aa)	-	-
ENSMUST00000138634	-	1976	-	-	- (aa)	-	-
ENSMUST00000129615	-	1793	-	-	- (aa)	-	-
ENSMUST00000133188	-	433	-	-	- (aa)	-	-
ENSMUST00000128193	-	437	-	-	- (aa)	-	-
ENSMUST00000178253	-	2581	-	ENSMUSP00000137024	122 (aa)	-	J3QNZ2

Gene Model

Click here to download ENSMUSG00000040667's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040667's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040667	Nup88	100	89.906	ENSG00000108559	NUP88	100	89.906	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000055	ribosomal large subunit export from nucleus	21873635.	IBA	Process
GO:0000056	ribosomal small subunit export from nucleus	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	-	ISO	Process
GO:0005634	nucleus	-	IEA	Component
GO:0005643	nuclear pore	21873635.	IBA	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0006611	protein export from nucleus	21873635.	IBA	Process
GO:0006913	nucleocytoplasmic transport	-	IEA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0017056	structural constituent of nuclear pore	-	IEA	Function
GO:0051028	mRNA transport	-	IEA	Process