EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000154517	-	690	-	-	- (aa)	-	-
ENSMUST00000043735	-	3535	-	ENSMUSP00000036178	977 (aa)	-	Q3V3R1
ENSMUST00000117291	-	3669	XM_006512449	ENSMUSP00000112870	977 (aa)	XP_006512512	Q3V3R1
ENSMUST00000120585	-	3687	-	ENSMUSP00000112897	977 (aa)	-	Q3V3R1

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00670	One carbon pool by folate	KEGG
mmu01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040675	Mthfd1l	100	88.344	ENSG00000120254	MTHFD1L	97	96.774	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001843	neural tube closure	23267094.	IMP	Process
GO:0004329	formate-tetrahydrofolate ligase activity	21873635.	IBA	Function
GO:0004329	formate-tetrahydrofolate ligase activity	12937168.	ISO	Function
GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	-	IEA	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	19948730.	IDA	Component
GO:0005739	mitochondrion	12937168.	ISO	Component
GO:0006730	one-carbon metabolic process	-	IEA	Process
GO:0006760	folic acid-containing compound metabolic process	-	ISO	Process
GO:0009113	purine nucleobase biosynthetic process	21873635.	IBA	Process
GO:0009257	10-formyltetrahydrofolate biosynthetic process	21873635.	IBA	Process
GO:0009257	10-formyltetrahydrofolate biosynthetic process	12937168.	ISO	Process
GO:0015942	formate metabolic process	-	ISO	Process
GO:0016874	ligase activity	-	IEA	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0048702	embryonic neurocranium morphogenesis	23267094.	IMP	Process
GO:0048703	embryonic viscerocranium morphogenesis	23267094.	IMP	Process
GO:0055114	oxidation-reduction process	-	IEA	Process