EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000040688 (Gene tree)
Gene ID: 213773
Gene Symbol: Tbl3
Alias: 9430070M15Rik
Full Name: transducin (beta)-like 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 9712 bases
Position: chr17:24697949-24707660
Accession: 2384863
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000120911	Utp13	PF08625.11	7e-39	1	1
ENSMUSP00000117818	Utp13	PF08625.11	6.7e-26	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000142362	-	852	-	-	- (aa)	-	-
ENSMUST00000126319	-	5226	-	ENSMUSP00000120911	801 (aa)	-	Q8C4J7
ENSMUST00000149326	-	608	-	-	- (aa)	-	-
ENSMUST00000046534	-	2767	-	-	- (aa)	-	-
ENSMUST00000130633	-	896	-	ENSMUSP00000117818	299 (aa)	-	F6YAR3

Gene Model

Click here to download ENSMUSG00000040688's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040688's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000040688	Tbl3	55	30.714	ENSMUSG00000003662	Ciao1	84	32.331
ENSMUSG00000040688	Tbl3	66	33.673	ENSMUSG00000066148	Prpf4	56	33.673
ENSMUSG00000040688	Tbl3	71	32.000	ENSMUSG00000034379	Wdr5b	92	32.000
ENSMUSG00000040688	Tbl3	66	31.452	ENSMUSG00000026917	Wdr5	99	31.452
ENSMUSG00000040688	Tbl3	56	32.500	ENSMUSG00000061559	Wdr61	98	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040688	Tbl3	99	89.933	ENSG00000183751	TBL3	98	89.747	Homo_sapiens
ENSMUSG00000040688	Tbl3	99	68.771	ENSAPOG00000021308	tbl3	85	64.011	Acanthochromis_polyacanthus
ENSMUSG00000040688	Tbl3	99	86.577	ENSAMEG00000017654	TBL3	98	87.166	Ailuropoda_melanoleuca
ENSMUSG00000040688	Tbl3	99	70.667	ENSACIG00000007459	tbl3	99	63.033	Amphilophus_citrinellus
ENSMUSG00000040688	Tbl3	99	69.767	ENSAOCG00000000453	tbl3	86	63.659	Amphiprion_ocellaris
ENSMUSG00000040688	Tbl3	99	69.767	ENSAPEG00000010228	tbl3	99	63.363	Amphiprion_percula
ENSMUSG00000040688	Tbl3	99	70.432	ENSATEG00000024571	tbl3	96	62.010	Anabas_testudineus
ENSMUSG00000040688	Tbl3	99	70.903	ENSAPLG00000008515	TBL3	99	62.107	Anas_platyrhynchos
ENSMUSG00000040688	Tbl3	76	64.035	ENSACAG00000012119	-	82	66.063	Anolis_carolinensis
ENSMUSG00000040688	Tbl3	99	90.000	ENSANAG00000030472	TBL3	99	90.000	Aotus_nancymaae
ENSMUSG00000040688	Tbl3	99	69.435	ENSACLG00000027954	tbl3	99	59.480	Astatotilapia_calliptera
ENSMUSG00000040688	Tbl3	99	67.450	ENSAMXG00000042589	tbl3	86	62.845	Astyanax_mexicanus
ENSMUSG00000040688	Tbl3	99	89.262	ENSBTAG00000020366	TBL3	99	86.456	Bos_taurus
ENSMUSG00000040688	Tbl3	99	40.667	WBGene00013143	Y53C12B.1	99	31.631	Caenorhabditis_elegans
ENSMUSG00000040688	Tbl3	99	88.596	ENSCJAG00000015245	TBL3	98	88.861	Callithrix_jacchus
ENSMUSG00000040688	Tbl3	99	86.951	ENSCAFG00000019430	TBL3	98	87.121	Canis_familiaris
ENSMUSG00000040688	Tbl3	99	87.248	ENSCAFG00020026321	TBL3	98	87.342	Canis_lupus_dingo
ENSMUSG00000040688	Tbl3	99	89.597	ENSCHIG00000007747	TBL3	97	88.861	Capra_hircus
ENSMUSG00000040688	Tbl3	99	88.255	ENSTSYG00000036142	TBL3	98	87.105	Carlito_syrichta
ENSMUSG00000040688	Tbl3	99	89.262	ENSCAPG00000016762	TBL3	95	83.933	Cavia_aperea
ENSMUSG00000040688	Tbl3	100	89.763	ENSCPOG00000005998	TBL3	99	89.886	Cavia_porcellus
ENSMUSG00000040688	Tbl3	99	89.724	ENSCCAG00000034486	TBL3	98	90.127	Cebus_capucinus
ENSMUSG00000040688	Tbl3	99	89.597	ENSCATG00000031298	TBL3	98	88.987	Cercocebus_atys
ENSMUSG00000040688	Tbl3	100	90.512	ENSCLAG00000013342	TBL3	99	90.645	Chinchilla_lanigera
ENSMUSG00000040688	Tbl3	99	88.926	ENSCSAG00000011191	TBL3	98	89.241	Chlorocebus_sabaeus
ENSMUSG00000040688	Tbl3	99	71.477	ENSCPBG00000000253	TBL3	99	66.335	Chrysemys_picta_bellii
ENSMUSG00000040688	Tbl3	99	51.689	ENSCING00000009521	-	98	45.386	Ciona_intestinalis
ENSMUSG00000040688	Tbl3	99	89.262	ENSCANG00000031169	TBL3	98	88.861	Colobus_angolensis_palliatus
ENSMUSG00000040688	Tbl3	100	95.006	ENSCGRG00001021817	Tbl3	99	95.196	Cricetulus_griseus_chok1gshd
ENSMUSG00000040688	Tbl3	100	95.006	ENSCGRG00000013364	Tbl3	99	95.196	Cricetulus_griseus_crigri
ENSMUSG00000040688	Tbl3	99	69.435	ENSCSEG00000015634	tbl3	99	59.841	Cynoglossus_semilaevis
ENSMUSG00000040688	Tbl3	99	70.000	ENSCVAG00000002720	tbl3	99	62.517	Cyprinodon_variegatus
ENSMUSG00000040688	Tbl3	98	53.692	ENSDARG00000052344	tbl3	88	53.750	Danio_rerio
ENSMUSG00000040688	Tbl3	83	87.903	ENSDNOG00000019996	TBL3	98	64.958	Dasypus_novemcinctus
ENSMUSG00000040688	Tbl3	99	89.933	ENSDORG00000007377	Tbl3	97	88.674	Dipodomys_ordii
ENSMUSG00000040688	Tbl3	94	38.542	FBgn0033454	CG1671	99	31.579	Drosophila_melanogaster
ENSMUSG00000040688	Tbl3	99	87.248	ENSETEG00000019403	TBL3	86	89.614	Echinops_telfairi
ENSMUSG00000040688	Tbl3	99	60.606	ENSEBUG00000003526	tbl3	90	56.616	Eptatretus_burgeri
ENSMUSG00000040688	Tbl3	99	89.933	ENSEASG00005004649	TBL3	98	90.253	Equus_asinus_asinus
ENSMUSG00000040688	Tbl3	99	89.975	ENSECAG00000019299	TBL3	98	90.380	Equus_caballus
ENSMUSG00000040688	Tbl3	99	87.584	ENSEEUG00000000761	-	63	87.269	Erinaceus_europaeus
ENSMUSG00000040688	Tbl3	99	66.556	ENSELUG00000007394	tbl3	98	51.361	Esox_lucius
ENSMUSG00000040688	Tbl3	100	87.890	ENSFCAG00000011740	TBL3	99	88.354	Felis_catus
ENSMUSG00000040688	Tbl3	99	70.234	ENSFALG00000003409	TBL3	99	65.087	Ficedula_albicollis
ENSMUSG00000040688	Tbl3	100	89.388	ENSFDAG00000007751	TBL3	99	89.633	Fukomys_damarensis
ENSMUSG00000040688	Tbl3	99	69.000	ENSFHEG00000002234	tbl3	86	62.797	Fundulus_heteroclitus
ENSMUSG00000040688	Tbl3	98	69.262	ENSGMOG00000011562	tbl3	99	57.553	Gadus_morhua
ENSMUSG00000040688	Tbl3	99	71.477	ENSGALG00000005558	TBL3	99	66.459	Gallus_gallus
ENSMUSG00000040688	Tbl3	99	68.000	ENSGAFG00000020165	tbl3	87	62.453	Gambusia_affinis
ENSMUSG00000040688	Tbl3	99	69.463	ENSGACG00000011960	tbl3	99	61.845	Gasterosteus_aculeatus
ENSMUSG00000040688	Tbl3	99	71.141	ENSGAGG00000024028	TBL3	97	65.869	Gopherus_agassizii
ENSMUSG00000040688	Tbl3	99	89.474	ENSGGOG00000009378	TBL3	98	89.620	Gorilla_gorilla
ENSMUSG00000040688	Tbl3	99	69.435	ENSHBUG00000011872	tbl3	98	62.450	Haplochromis_burtoni
ENSMUSG00000040688	Tbl3	99	89.500	ENSHGLG00000002431	TBL3	99	89.886	Heterocephalus_glaber_female
ENSMUSG00000040688	Tbl3	99	88.250	ENSHGLG00100012878	TBL3	99	88.622	Heterocephalus_glaber_male
ENSMUSG00000040688	Tbl3	99	70.100	ENSHCOG00000016689	tbl3	86	62.328	Hippocampus_comes
ENSMUSG00000040688	Tbl3	99	66.779	ENSIPUG00000003568	TBL3	87	60.826	Ictalurus_punctatus
ENSMUSG00000040688	Tbl3	100	89.014	ENSSTOG00000012964	TBL3	99	89.633	Ictidomys_tridecemlineatus
ENSMUSG00000040688	Tbl3	100	89.638	ENSJJAG00000004124	Tbl3	99	90.013	Jaculus_jaculus
ENSMUSG00000040688	Tbl3	99	71.667	ENSKMAG00000020117	tbl3	99	61.408	Kryptolebias_marmoratus
ENSMUSG00000040688	Tbl3	99	69.103	ENSLBEG00000026742	tbl3	86	61.845	Labrus_bergylta
ENSMUSG00000040688	Tbl3	99	70.345	ENSLACG00000000615	TBL3	99	62.640	Latimeria_chalumnae
ENSMUSG00000040688	Tbl3	99	69.799	ENSLOCG00000008853	tbl3	86	64.170	Lepisosteus_oculatus
ENSMUSG00000040688	Tbl3	100	86.267	ENSLAFG00000004699	TBL3	99	86.346	Loxodonta_africana
ENSMUSG00000040688	Tbl3	99	89.597	ENSMFAG00000030302	TBL3	98	89.367	Macaca_fascicularis
ENSMUSG00000040688	Tbl3	99	89.262	ENSMMUG00000007943	TBL3	98	89.241	Macaca_mulatta
ENSMUSG00000040688	Tbl3	99	88.972	ENSMNEG00000032603	TBL3	98	89.367	Macaca_nemestrina
ENSMUSG00000040688	Tbl3	99	89.262	ENSMLEG00000043359	TBL3	98	89.433	Mandrillus_leucophaeus
ENSMUSG00000040688	Tbl3	99	69.767	ENSMAMG00000023507	tbl3	85	62.921	Mastacembelus_armatus
ENSMUSG00000040688	Tbl3	99	69.435	ENSMZEG00005000630	tbl3	97	59.974	Maylandia_zebra
ENSMUSG00000040688	Tbl3	99	70.569	ENSMGAG00000005694	TBL3	99	65.668	Meleagris_gallopavo
ENSMUSG00000040688	Tbl3	100	94.881	ENSMAUG00000008718	Tbl3	99	95.322	Mesocricetus_auratus
ENSMUSG00000040688	Tbl3	99	90.604	ENSMICG00000012787	TBL3	87	89.620	Microcebus_murinus
ENSMUSG00000040688	Tbl3	100	95.256	ENSMOCG00000019634	Tbl3	99	95.575	Microtus_ochrogaster
ENSMUSG00000040688	Tbl3	99	70.349	ENSMMOG00000007551	tbl3	99	61.039	Mola_mola
ENSMUSG00000040688	Tbl3	99	77.852	ENSMODG00000016091	TBL3	99	73.342	Monodelphis_domestica
ENSMUSG00000040688	Tbl3	99	68.771	ENSMALG00000007013	tbl3	86	62.829	Monopterus_albus
ENSMUSG00000040688	Tbl3	100	98.502	MGP_CAROLIEiJ_G0021199	Tbl3	100	98.502	Mus_caroli
ENSMUSG00000040688	Tbl3	100	97.503	MGP_PahariEiJ_G0023516	Tbl3	100	97.503	Mus_pahari
ENSMUSG00000040688	Tbl3	100	99.251	MGP_SPRETEiJ_G0022110	Tbl3	100	99.329	Mus_spretus
ENSMUSG00000040688	Tbl3	100	86.692	ENSMPUG00000015545	TBL3	98	87.342	Mustela_putorius_furo
ENSMUSG00000040688	Tbl3	100	88.140	ENSMLUG00000011684	TBL3	99	88.734	Myotis_lucifugus
ENSMUSG00000040688	Tbl3	100	91.511	ENSNGAG00000002428	Tbl3	99	91.656	Nannospalax_galili
ENSMUSG00000040688	Tbl3	99	69.767	ENSNBRG00000003173	tbl3	99	60.198	Neolamprologus_brichardi
ENSMUSG00000040688	Tbl3	99	89.348	ENSNLEG00000008889	TBL3	98	89.620	Nomascus_leucogenys
ENSMUSG00000040688	Tbl3	98	78.112	ENSMEUG00000004011	TBL3	99	69.684	Notamacropus_eugenii
ENSMUSG00000040688	Tbl3	99	85.859	ENSOPRG00000002527	-	99	80.633	Ochotona_princeps
ENSMUSG00000040688	Tbl3	100	88.140	ENSODEG00000013930	TBL3	99	88.369	Octodon_degus
ENSMUSG00000040688	Tbl3	99	69.767	ENSONIG00000002319	tbl3	99	62.454	Oreochromis_niloticus
ENSMUSG00000040688	Tbl3	97	65.664	ENSOANG00000009819	TBL3	99	65.664	Ornithorhynchus_anatinus
ENSMUSG00000040688	Tbl3	99	70.000	ENSORLG00000009312	tbl3	94	62.875	Oryzias_latipes
ENSMUSG00000040688	Tbl3	99	70.000	ENSORLG00020017711	tbl3	94	62.625	Oryzias_latipes_hni
ENSMUSG00000040688	Tbl3	99	69.667	ENSORLG00015007004	tbl3	85	62.625	Oryzias_latipes_hsok
ENSMUSG00000040688	Tbl3	99	70.000	ENSOMEG00000012684	tbl3	97	61.111	Oryzias_melastigma
ENSMUSG00000040688	Tbl3	99	87.375	ENSOGAG00000010104	TBL3	99	87.975	Otolemur_garnettii
ENSMUSG00000040688	Tbl3	99	73.267	ENSOARG00000017059	TBL3	98	80.938	Ovis_aries
ENSMUSG00000040688	Tbl3	99	89.597	ENSPPAG00000041939	TBL3	98	89.367	Pan_paniscus
ENSMUSG00000040688	Tbl3	100	86.891	ENSPPRG00000000893	TBL3	99	87.342	Panthera_pardus
ENSMUSG00000040688	Tbl3	98	86.892	ENSPTIG00000010377	TBL3	98	87.662	Panthera_tigris_altaica
ENSMUSG00000040688	Tbl3	99	89.597	ENSPTRG00000007621	TBL3	98	89.367	Pan_troglodytes
ENSMUSG00000040688	Tbl3	99	89.597	ENSPANG00000007024	TBL3	98	88.987	Papio_anubis
ENSMUSG00000040688	Tbl3	99	67.677	ENSPKIG00000000136	tbl3	87	62.673	Paramormyrops_kingsleyae
ENSMUSG00000040688	Tbl3	99	68.792	ENSPSIG00000013024	TBL3	97	65.190	Pelodiscus_sinensis
ENSMUSG00000040688	Tbl3	99	69.435	ENSPMGG00000020660	tbl3	96	61.558	Periophthalmus_magnuspinnatus
ENSMUSG00000040688	Tbl3	98	95.044	ENSPEMG00000009768	Tbl3	98	95.090	Peromyscus_maniculatus_bairdii
ENSMUSG00000040688	Tbl3	99	57.843	ENSPMAG00000004860	tbl3	93	52.273	Petromyzon_marinus
ENSMUSG00000040688	Tbl3	99	80.201	ENSPCIG00000021811	TBL3	99	74.468	Phascolarctos_cinereus
ENSMUSG00000040688	Tbl3	99	68.667	ENSPFOG00000009834	tbl3	86	62.797	Poecilia_formosa
ENSMUSG00000040688	Tbl3	99	68.667	ENSPLAG00000016437	tbl3	86	62.797	Poecilia_latipinna
ENSMUSG00000040688	Tbl3	99	68.667	ENSPMEG00000019513	tbl3	86	62.797	Poecilia_mexicana
ENSMUSG00000040688	Tbl3	99	89.262	ENSPPYG00000006977	TBL3	98	89.114	Pongo_abelii
ENSMUSG00000040688	Tbl3	99	90.268	ENSPCOG00000019749	TBL3	98	89.873	Propithecus_coquereli
ENSMUSG00000040688	Tbl3	99	88.101	ENSPVAG00000016710	TBL3	99	88.310	Pteropus_vampyrus
ENSMUSG00000040688	Tbl3	99	61.794	ENSPNYG00000017137	tbl3	99	58.125	Pundamilia_nyererei
ENSMUSG00000040688	Tbl3	99	65.763	ENSPNAG00000017527	tbl3	97	59.138	Pygocentrus_nattereri
ENSMUSG00000040688	Tbl3	100	95.381	ENSRNOG00000013429	Tbl3	99	95.575	Rattus_norvegicus
ENSMUSG00000040688	Tbl3	99	89.597	ENSRBIG00000032982	TBL3	98	83.944	Rhinopithecus_bieti
ENSMUSG00000040688	Tbl3	99	89.597	ENSRROG00000026697	TBL3	98	89.494	Rhinopithecus_roxellana
ENSMUSG00000040688	Tbl3	99	35.370	YLR222C	-	98	31.043	Saccharomyces_cerevisiae
ENSMUSG00000040688	Tbl3	99	89.975	ENSSBOG00000013923	TBL3	98	90.380	Saimiri_boliviensis_boliviensis
ENSMUSG00000040688	Tbl3	99	77.592	ENSSHAG00000015266	TBL3	99	73.842	Sarcophilus_harrisii
ENSMUSG00000040688	Tbl3	99	68.456	ENSSFOG00015023537	tbl3	85	62.843	Scleropages_formosus
ENSMUSG00000040688	Tbl3	99	69.103	ENSSMAG00000014338	tbl3	98	62.977	Scophthalmus_maximus
ENSMUSG00000040688	Tbl3	99	70.100	ENSSDUG00000008158	tbl3	86	62.330	Seriola_dumerili
ENSMUSG00000040688	Tbl3	99	69.767	ENSSLDG00000023733	tbl3	98	60.794	Seriola_lalandi_dorsalis
ENSMUSG00000040688	Tbl3	67	84.667	ENSSARG00000010958	-	57	84.667	Sorex_araneus
ENSMUSG00000040688	Tbl3	99	70.805	ENSSPUG00000012939	TBL3	98	70.025	Sphenodon_punctatus
ENSMUSG00000040688	Tbl3	99	69.103	ENSSPAG00000010659	tbl3	86	63.171	Stegastes_partitus
ENSMUSG00000040688	Tbl3	100	88.514	ENSSSCG00000037686	TBL3	99	88.861	Sus_scrofa
ENSMUSG00000040688	Tbl3	99	70.134	ENSTGUG00000006592	-	100	64.240	Taeniopygia_guttata
ENSMUSG00000040688	Tbl3	99	69.000	ENSTRUG00000007010	tbl3	86	61.798	Takifugu_rubripes
ENSMUSG00000040688	Tbl3	99	69.799	ENSTNIG00000018011	tbl3	98	62.389	Tetraodon_nigroviridis
ENSMUSG00000040688	Tbl3	52	93.069	ENSTBEG00000000017	-	53	93.069	Tupaia_belangeri
ENSMUSG00000040688	Tbl3	99	88.591	ENSTTRG00000011395	TBL3	98	86.835	Tursiops_truncatus
ENSMUSG00000040688	Tbl3	99	88.340	ENSUAMG00000019276	TBL3	98	88.354	Ursus_americanus
ENSMUSG00000040688	Tbl3	99	87.919	ENSUMAG00000022149	TBL3	98	82.973	Ursus_maritimus
ENSMUSG00000040688	Tbl3	100	86.816	ENSVVUG00000009589	TBL3	98	87.595	Vulpes_vulpes
ENSMUSG00000040688	Tbl3	99	57.037	ENSXETG00000007217	tbl3	96	57.125	Xenopus_tropicalis
ENSMUSG00000040688	Tbl3	99	68.333	ENSXCOG00000010277	tbl3	99	62.203	Xiphophorus_couchianus
ENSMUSG00000040688	Tbl3	99	68.333	ENSXMAG00000014866	tbl3	91	63.539	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	21873635.	IBA	Component