EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000040725 (Gene tree)
Gene ID: 232989
Gene Symbol: Hnrnpul1
Alias: E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1
Full Name: heterogeneous nuclear ribonucleoprotein U-like 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 33593 bases
Position: chr7:25721165-25754757
Accession: 2443517
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000104038	SAP	PF02037.27	2e-09	1	1
ENSMUSP00000146263	SAP	PF02037.27	4.7e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000108401	-	1240	-	ENSMUSP00000104038	340 (aa)	-	Q8VDM6
ENSMUST00000043765	-	3354	XM_006539855	ENSMUSP00000037268	759 (aa)	XP_006539918	Q8VDM6
ENSMUST00000206260	-	2296	-	-	- (aa)	-	-
ENSMUST00000206832	-	3784	-	ENSMUSP00000146263	859 (aa)	-	Q8VDM6
ENSMUST00000206041	-	2615	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000040725's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040725's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000040725	Hnrnpul1	61	52.000	ENSMUSG00000039630	Hnrnpu	55	59.091
ENSMUSG00000040725	Hnrnpul1	60	45.763	ENSMUSG00000071659	Hnrnpul2	59	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040725	Hnrnpul1	99	92.308	ENSG00000105323	HNRNPUL1	98	100.000	Homo_sapiens
ENSMUSG00000040725	Hnrnpul1	98	53.593	ENSAPOG00000013078	HNRNPUL1	77	63.399	Acanthochromis_polyacanthus
ENSMUSG00000040725	Hnrnpul1	100	94.774	ENSAMEG00000011681	HNRNPUL1	71	96.248	Ailuropoda_melanoleuca
ENSMUSG00000040725	Hnrnpul1	71	66.338	ENSACIG00000024072	HNRNPUL1	76	65.534	Amphilophus_citrinellus
ENSMUSG00000040725	Hnrnpul1	69	77.778	ENSAOCG00000006694	HNRNPUL1	77	59.398	Amphiprion_ocellaris
ENSMUSG00000040725	Hnrnpul1	62	72.897	ENSAPEG00000014298	HNRNPUL1	77	59.220	Amphiprion_percula
ENSMUSG00000040725	Hnrnpul1	100	90.356	ENSANAG00000027262	HNRNPUL1	66	97.880	Aotus_nancymaae
ENSMUSG00000040725	Hnrnpul1	84	73.333	ENSAMXG00000004623	-	76	64.763	Astyanax_mexicanus
ENSMUSG00000040725	Hnrnpul1	99	50.376	ENSAMXG00000013644	HNRNPUL1	77	62.166	Astyanax_mexicanus
ENSMUSG00000040725	Hnrnpul1	99	93.175	ENSBTAG00000003168	HNRNPUL1	71	95.915	Bos_taurus
ENSMUSG00000040725	Hnrnpul1	100	92.980	ENSCJAG00000020106	HNRNPUL1	73	95.714	Callithrix_jacchus
ENSMUSG00000040725	Hnrnpul1	100	95.814	ENSCAFG00000005026	HNRNPUL1	100	95.814	Canis_familiaris
ENSMUSG00000040725	Hnrnpul1	100	90.614	ENSCAFG00020014782	HNRNPUL1	71	90.407	Canis_lupus_dingo
ENSMUSG00000040725	Hnrnpul1	99	84.164	ENSCHIG00000015165	HNRNPUL1	71	91.057	Capra_hircus
ENSMUSG00000040725	Hnrnpul1	100	93.481	ENSCPOG00000008101	-	73	94.762	Cavia_porcellus
ENSMUSG00000040725	Hnrnpul1	100	92.759	ENSCCAG00000038049	HNRNPUL1	71	95.425	Cebus_capucinus
ENSMUSG00000040725	Hnrnpul1	99	92.899	ENSCATG00000039807	HNRNPUL1	71	96.078	Cercocebus_atys
ENSMUSG00000040725	Hnrnpul1	100	95.693	ENSCLAG00000000985	HNRNPUL1	74	96.825	Chinchilla_lanigera
ENSMUSG00000040725	Hnrnpul1	99	92.899	ENSCSAG00000003544	HNRNPUL1	71	96.078	Chlorocebus_sabaeus
ENSMUSG00000040725	Hnrnpul1	99	89.941	ENSCANG00000027995	HNRNPUL1	71	94.118	Colobus_angolensis_palliatus
ENSMUSG00000040725	Hnrnpul1	100	95.727	ENSCGRG00001015368	Hnrnpul1	100	95.727	Cricetulus_griseus_chok1gshd
ENSMUSG00000040725	Hnrnpul1	98	48.802	ENSCSEG00000005657	HNRNPUL1	70	61.338	Cynoglossus_semilaevis
ENSMUSG00000040725	Hnrnpul1	78	78.788	ENSCVAG00000009524	-	72	77.828	Cyprinodon_variegatus
ENSMUSG00000040725	Hnrnpul1	100	92.102	ENSDORG00000003603	Hnrnpul1	72	95.269	Dipodomys_ordii
ENSMUSG00000040725	Hnrnpul1	100	94.767	ENSEASG00005006344	HNRNPUL1	71	96.405	Equus_asinus_asinus
ENSMUSG00000040725	Hnrnpul1	100	94.657	ENSECAG00000024149	HNRNPUL1	71	96.248	Equus_caballus
ENSMUSG00000040725	Hnrnpul1	84	72.500	ENSELUG00000019520	HNRNPUL1	60	71.037	Esox_lucius
ENSMUSG00000040725	Hnrnpul1	100	95.698	ENSFCAG00000005433	HNRNPUL1	100	95.698	Felis_catus
ENSMUSG00000040725	Hnrnpul1	100	88.837	ENSFDAG00000011784	HNRNPUL1	72	87.778	Fukomys_damarensis
ENSMUSG00000040725	Hnrnpul1	78	60.637	ENSGAFG00000015786	HNRNPUL1	78	62.787	Gambusia_affinis
ENSMUSG00000040725	Hnrnpul1	99	92.308	ENSGGOG00000009804	HNRNPUL1	71	95.752	Gorilla_gorilla
ENSMUSG00000040725	Hnrnpul1	98	49.487	ENSHBUG00000010129	HNRNPUL1	77	61.642	Haplochromis_burtoni
ENSMUSG00000040725	Hnrnpul1	100	94.878	ENSHGLG00000007171	HNRNPUL1	74	96.667	Heterocephalus_glaber_female
ENSMUSG00000040725	Hnrnpul1	99	86.982	ENSHGLG00100005101	HNRNPUL1	82	91.759	Heterocephalus_glaber_male
ENSMUSG00000040725	Hnrnpul1	74	61.728	ENSHCOG00000017927	HNRNPUL1	78	58.471	Hippocampus_comes
ENSMUSG00000040725	Hnrnpul1	93	54.214	ENSIPUG00000011639	-	75	59.804	Ictalurus_punctatus
ENSMUSG00000040725	Hnrnpul1	74	68.281	ENSIPUG00000024012	HNRNPUL1	67	64.130	Ictalurus_punctatus
ENSMUSG00000040725	Hnrnpul1	100	96.047	ENSSTOG00000001605	HNRNPUL1	71	97.059	Ictidomys_tridecemlineatus
ENSMUSG00000040725	Hnrnpul1	100	91.618	ENSJJAG00000011986	Hnrnpul1	74	92.441	Jaculus_jaculus
ENSMUSG00000040725	Hnrnpul1	95	55.064	ENSKMAG00000009438	HNRNPUL1	76	61.231	Kryptolebias_marmoratus
ENSMUSG00000040725	Hnrnpul1	98	51.014	ENSLBEG00000018092	HNRNPUL1	78	62.298	Labrus_bergylta
ENSMUSG00000040725	Hnrnpul1	89	56.393	ENSLACG00000018039	HNRNPUL1	76	65.534	Latimeria_chalumnae
ENSMUSG00000040725	Hnrnpul1	74	62.463	ENSLOCG00000014236	HNRNPUL1	75	67.524	Lepisosteus_oculatus
ENSMUSG00000040725	Hnrnpul1	99	92.899	ENSMFAG00000034257	HNRNPUL1	71	96.078	Macaca_fascicularis
ENSMUSG00000040725	Hnrnpul1	99	92.899	ENSMMUG00000008139	HNRNPUL1	71	96.078	Macaca_mulatta
ENSMUSG00000040725	Hnrnpul1	99	92.899	ENSMNEG00000035264	HNRNPUL1	71	96.078	Macaca_nemestrina
ENSMUSG00000040725	Hnrnpul1	99	89.941	ENSMLEG00000024704	HNRNPUL1	71	94.118	Mandrillus_leucophaeus
ENSMUSG00000040725	Hnrnpul1	98	50.270	ENSMAMG00000014383	HNRNPUL1	78	62.615	Mastacembelus_armatus
ENSMUSG00000040725	Hnrnpul1	81	60.267	ENSMZEG00005024205	HNRNPUL1	77	61.286	Maylandia_zebra
ENSMUSG00000040725	Hnrnpul1	100	96.628	ENSMAUG00000020435	Hnrnpul1	100	96.628	Mesocricetus_auratus
ENSMUSG00000040725	Hnrnpul1	99	92.308	ENSMICG00000001989	HNRNPUL1	74	95.556	Microcebus_murinus
ENSMUSG00000040725	Hnrnpul1	100	97.442	ENSMOCG00000008200	Hnrnpul1	100	97.442	Microtus_ochrogaster
ENSMUSG00000040725	Hnrnpul1	98	50.970	ENSMMOG00000004808	HNRNPUL1	74	62.745	Mola_mola
ENSMUSG00000040725	Hnrnpul1	100	99.706	MGP_CAROLIEiJ_G0029381	Hnrnpul1	100	99.706	Mus_caroli
ENSMUSG00000040725	Hnrnpul1	100	99.069	MGP_PahariEiJ_G0021234	Hnrnpul1	100	99.069	Mus_pahari
ENSMUSG00000040725	Hnrnpul1	100	100.000	MGP_SPRETEiJ_G0030477	Hnrnpul1	100	100.000	Mus_spretus
ENSMUSG00000040725	Hnrnpul1	100	94.070	ENSMPUG00000017654	HNRNPUL1	67	95.915	Mustela_putorius_furo
ENSMUSG00000040725	Hnrnpul1	100	96.042	ENSNGAG00000017197	Hnrnpul1	73	96.825	Nannospalax_galili
ENSMUSG00000040725	Hnrnpul1	98	51.482	ENSNBRG00000004398	HNRNPUL1	77	62.826	Neolamprologus_brichardi
ENSMUSG00000040725	Hnrnpul1	99	93.134	ENSNLEG00000013751	HNRNPUL1	65	98.491	Nomascus_leucogenys
ENSMUSG00000040725	Hnrnpul1	100	91.163	ENSOPRG00000008773	HNRNPUL1	71	92.320	Ochotona_princeps
ENSMUSG00000040725	Hnrnpul1	100	95.693	ENSODEG00000000913	HNRNPUL1	74	96.667	Octodon_degus
ENSMUSG00000040725	Hnrnpul1	98	55.263	ENSONIG00000004004	HNRNPUL1	76	65.539	Oreochromis_niloticus
ENSMUSG00000040725	Hnrnpul1	100	94.179	ENSOCUG00000016666	HNRNPUL1	74	96.190	Oryctolagus_cuniculus
ENSMUSG00000040725	Hnrnpul1	71	65.635	ENSORLG00000001002	HNRNPUL1	78	61.654	Oryzias_latipes
ENSMUSG00000040725	Hnrnpul1	71	65.161	ENSORLG00020020272	HNRNPUL1	78	61.970	Oryzias_latipes_hni
ENSMUSG00000040725	Hnrnpul1	99	51.989	ENSORLG00015009059	HNRNPUL1	78	61.805	Oryzias_latipes_hsok
ENSMUSG00000040725	Hnrnpul1	99	49.357	ENSOMEG00000021915	HNRNPUL1	75	62.405	Oryzias_melastigma
ENSMUSG00000040725	Hnrnpul1	99	90.828	ENSOGAG00000013395	-	74	94.921	Otolemur_garnettii
ENSMUSG00000040725	Hnrnpul1	100	88.953	ENSPPAG00000038140	HNRNPUL1	100	88.953	Pan_paniscus
ENSMUSG00000040725	Hnrnpul1	100	95.233	ENSPPRG00000003397	HNRNPUL1	100	95.233	Panthera_pardus
ENSMUSG00000040725	Hnrnpul1	99	92.308	ENSPTRG00000011019	HNRNPUL1	71	95.752	Pan_troglodytes
ENSMUSG00000040725	Hnrnpul1	99	92.899	ENSPANG00000009467	HNRNPUL1	71	96.078	Papio_anubis
ENSMUSG00000040725	Hnrnpul1	99	52.128	ENSPKIG00000017308	-	81	63.748	Paramormyrops_kingsleyae
ENSMUSG00000040725	Hnrnpul1	100	97.564	ENSPEMG00000009618	Hnrnpul1	100	97.564	Peromyscus_maniculatus_bairdii
ENSMUSG00000040725	Hnrnpul1	77	81.818	ENSPFOG00000014230	HNRNPUL1	55	81.081	Poecilia_formosa
ENSMUSG00000040725	Hnrnpul1	75	81.818	ENSPLAG00000004833	HNRNPUL1	72	65.033	Poecilia_latipinna
ENSMUSG00000040725	Hnrnpul1	69	81.818	ENSPREG00000017804	HNRNPUL1	62	81.081	Poecilia_reticulata
ENSMUSG00000040725	Hnrnpul1	99	90.676	ENSPPYG00000010011	HNRNPUL1	73	94.728	Pongo_abelii
ENSMUSG00000040725	Hnrnpul1	99	90.237	ENSPCAG00000013414	HNRNPUL1	86	92.593	Procavia_capensis
ENSMUSG00000040725	Hnrnpul1	99	92.604	ENSPCOG00000020358	HNRNPUL1	73	96.190	Propithecus_coquereli
ENSMUSG00000040725	Hnrnpul1	98	51.226	ENSPNYG00000007583	HNRNPUL1	77	62.712	Pundamilia_nyererei
ENSMUSG00000040725	Hnrnpul1	94	56.979	ENSPNAG00000019775	HNRNPUL1	66	78.378	Pygocentrus_nattereri
ENSMUSG00000040725	Hnrnpul1	100	98.603	ENSRNOG00000020683	Hnrnpul1	100	98.603	Rattus_norvegicus
ENSMUSG00000040725	Hnrnpul1	99	93.195	ENSRBIG00000036625	HNRNPUL1	71	96.242	Rhinopithecus_bieti
ENSMUSG00000040725	Hnrnpul1	99	93.195	ENSRROG00000030124	HNRNPUL1	71	96.242	Rhinopithecus_roxellana
ENSMUSG00000040725	Hnrnpul1	100	94.296	ENSSBOG00000035512	HNRNPUL1	74	95.873	Saimiri_boliviensis_boliviensis
ENSMUSG00000040725	Hnrnpul1	62	71.351	ENSSFOG00015007000	-	63	73.374	Scleropages_formosus
ENSMUSG00000040725	Hnrnpul1	99	55.917	ENSSFOG00015022940	HNRNPUL1	77	67.537	Scleropages_formosus
ENSMUSG00000040725	Hnrnpul1	98	52.663	ENSSMAG00000020270	HNRNPUL1	70	63.518	Scophthalmus_maximus
ENSMUSG00000040725	Hnrnpul1	88	81.818	ENSSDUG00000000399	HNRNPUL1	78	65.523	Seriola_dumerili
ENSMUSG00000040725	Hnrnpul1	68	81.818	ENSSLDG00000005140	HNRNPUL1	55	81.081	Seriola_lalandi_dorsalis
ENSMUSG00000040725	Hnrnpul1	84	87.805	ENSSPUG00000014431	HNRNPUL1	75	67.576	Sphenodon_punctatus
ENSMUSG00000040725	Hnrnpul1	86	58.616	ENSSPAG00000018378	HNRNPUL1	77	59.265	Stegastes_partitus
ENSMUSG00000040725	Hnrnpul1	97	53.194	ENSTRUG00000015154	HNRNPUL1	73	60.458	Takifugu_rubripes
ENSMUSG00000040725	Hnrnpul1	100	95.814	ENSVVUG00000005386	HNRNPUL1	100	95.814	Vulpes_vulpes
ENSMUSG00000040725	Hnrnpul1	71	81.818	ENSXCOG00000012492	HNRNPUL1	77	62.540	Xiphophorus_couchianus
ENSMUSG00000040725	Hnrnpul1	68	68.197	ENSXMAG00000004815	HNRNPUL1	60	72.112	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0009615	response to virus	-	IEA	Process
GO:0019899	enzyme binding	-	ISO	Function