EuRBPDB

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  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000040940 (Gene tree)
Gene ID
16801
Gene Symbol
Arhgef1
Alias
Lbcl2|Lsc
Full Name
Rho guanine nucleotide exchange factor (GEF) 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
23683
Position
chr7: 24902912-24926594
Accession
1353510
RBP type
non-canonical RBP
Summary
-
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000206011-419-ENSMUSP00000145981102 (aa)-A0A0U1RPH2
ENSMUST00000144714-1087--- (aa)--
ENSMUST00000126484-775--- (aa)--
ENSMUST00000205295-777-ENSMUSP00000146059233 (aa)-A0A0U1RPN7
ENSMUST00000098683-3375XM_006539564ENSMUSP00000096280979 (aa)XP_006539627Q61210
ENSMUST00000151121-390-ENSMUSP00000114388101 (aa)-D3YVJ9
ENSMUST00000132786-832--- (aa)--
ENSMUST00000129928-777--- (aa)--
ENSMUST00000047873-3212-ENSMUSP00000046469920 (aa)-Q61210
ENSMUST00000127761-1827--- (aa)--
ENSMUST00000206906-737-ENSMUSP00000146065192 (aa)-A0A0U1RPP2
ENSMUST00000206508-3195-ENSMUSP00000146314919 (aa)-Q61210
ENSMUST00000129383-351--- (aa)--
ENSMUST00000126918-821--- (aa)--
ENSMUST00000145783-4243--- (aa)--
ENSMUST00000117796-3508-ENSMUSP00000113771976 (aa)-E9PUF7
ENSMUST00000132751-1851-ENSMUSP00000117008616 (aa)-F6ZN61
ENSMUST00000117419-3214-ENSMUSP00000113366920 (aa)-Q61210
ENSMUST00000206028-374-ENSMUSP0000014565930 (aa)-A0A0U1RNQ2
Gene Model
Click here to download ENSMUSG00000040940's gene model file
Pathways
Pathway IDPathway NameSource
mmu04270Vascular smooth muscle contractionKEGG
mmu04611Platelet activationKEGG
mmu04810Regulation of actin cytoskeletonKEGG
mmu04928Parathyroid hormone synthesis, secretion and actionKEGG
mmu05163Human cytomegalovirus infectionKEGG
mmu05200Pathways in cancerKEGG
mmu05205Proteoglycans in cancerKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040940's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000040940Arhgef19891.304ENSG00000076928ARHGEF19989.364Homo_sapiens
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001664G protein-coupled receptor binding-IEAFunction
GO:0005085guanyl-nucleotide exchange factor activity-IEAFunction
GO:0005089Rho guanyl-nucleotide exchange factor activity-IEAFunction
GO:0005096GTPase activator activity-IEAFunction
GO:0005515protein binding15102471.17000758.IPIFunction
GO:0005737cytoplasm-IEAComponent
GO:0005829cytosol-ISOComponent
GO:0005886plasma membrane-ISOComponent
GO:0007186G protein-coupled receptor signaling pathway-IEAProcess
GO:0016020membrane-IEAComponent
GO:0035023regulation of Rho protein signal transduction-IEAProcess
GO:0060548negative regulation of cell death-ISOProcess

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