EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041057 (Gene tree)
Gene ID: 72515
Gene Symbol: Wdr43
Alias: 2610318G08Rik
Full Name: WD repeat domain 43
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 43137 bases
Position: chr17:71615895-71659031
Accession: 1919765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000048337	Utp12	PF04003.12	3.2e-22	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000234627	-	663	-	-	- (aa)	-	-
ENSMUST00000234560	-	2410	-	ENSMUSP00000157071	483 (aa)	-	-
ENSMUST00000234581	-	402	-	-	- (aa)	-	-
ENSMUST00000047086	-	3450	-	ENSMUSP00000048337	677 (aa)	-	Q6ZQL4
ENSMUST00000234794	-	297	-	-	- (aa)	-	-
ENSMUST00000234339	-	798	-	-	- (aa)	-	-
ENSMUST00000234947	-	528	-	-	- (aa)	-	-
ENSMUST00000234933	-	722	-	ENSMUSP00000157149	149 (aa)	-	-
ENSMUST00000234424	-	745	-	-	- (aa)	-	-
ENSMUST00000235094	-	459	-	-	- (aa)	-	-
ENSMUST00000234656	-	401	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000041057's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041057's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041057	Wdr43	100	84.831	ENSG00000163811	WDR43	100	94.118	Homo_sapiens
ENSMUSG00000041057	Wdr43	89	54.262	ENSAPOG00000020303	wdr43	98	51.608	Acanthochromis_polyacanthus
ENSMUSG00000041057	Wdr43	99	84.925	ENSAMEG00000005150	WDR43	97	84.831	Ailuropoda_melanoleuca
ENSMUSG00000041057	Wdr43	99	49.853	ENSACIG00000010675	wdr43	100	50.727	Amphilophus_citrinellus
ENSMUSG00000041057	Wdr43	91	54.473	ENSAOCG00000006818	wdr43	96	55.112	Amphiprion_ocellaris
ENSMUSG00000041057	Wdr43	91	54.372	ENSAPEG00000000552	wdr43	100	51.857	Amphiprion_percula
ENSMUSG00000041057	Wdr43	92	54.028	ENSATEG00000010805	wdr43	100	52.762	Anabas_testudineus
ENSMUSG00000041057	Wdr43	87	68.174	ENSAPLG00000014314	WDR43	99	67.162	Anas_platyrhynchos
ENSMUSG00000041057	Wdr43	94	66.872	ENSACAG00000009264	WDR43	89	67.357	Anolis_carolinensis
ENSMUSG00000041057	Wdr43	100	85.420	ENSANAG00000035736	WDR43	100	85.567	Aotus_nancymaae
ENSMUSG00000041057	Wdr43	99	52.733	ENSACLG00000025675	wdr43	100	51.749	Astatotilapia_calliptera
ENSMUSG00000041057	Wdr43	100	53.102	ENSAMXG00000018623	wdr43	100	53.458	Astyanax_mexicanus
ENSMUSG00000041057	Wdr43	100	85.463	ENSBTAG00000018196	WDR43	100	86.784	Bos_taurus
ENSMUSG00000041057	Wdr43	100	84.389	ENSCJAG00000008946	WDR43	100	85.125	Callithrix_jacchus
ENSMUSG00000041057	Wdr43	100	84.141	ENSCAFG00000005253	WDR43	100	86.344	Canis_familiaris
ENSMUSG00000041057	Wdr43	90	87.685	ENSCAFG00020024035	WDR43	85	87.379	Canis_lupus_dingo
ENSMUSG00000041057	Wdr43	100	85.609	ENSCHIG00000006001	WDR43	100	86.931	Capra_hircus
ENSMUSG00000041057	Wdr43	89	78.512	ENSTSYG00000006448	WDR43	100	79.344	Carlito_syrichta
ENSMUSG00000041057	Wdr43	88	68.614	ENSCAPG00000014276	WDR43	100	69.616	Cavia_aperea
ENSMUSG00000041057	Wdr43	100	84.094	ENSCCAG00000028533	WDR43	100	84.831	Cebus_capucinus
ENSMUSG00000041057	Wdr43	100	84.853	ENSCATG00000031005	WDR43	100	85.588	Cercocebus_atys
ENSMUSG00000041057	Wdr43	100	85.420	ENSCLAG00000011898	WDR43	100	85.862	Chinchilla_lanigera
ENSMUSG00000041057	Wdr43	73	83.534	ENSCSAG00000010665	WDR43	100	84.538	Chlorocebus_sabaeus
ENSMUSG00000041057	Wdr43	99	83.433	ENSCHOG00000013830	WDR43	97	83.652	Choloepus_hoffmanni
ENSMUSG00000041057	Wdr43	100	67.977	ENSCPBG00000000374	WDR43	100	67.004	Chrysemys_picta_bellii
ENSMUSG00000041057	Wdr43	100	82.032	ENSCANG00000033059	WDR43	100	80.347	Colobus_angolensis_palliatus
ENSMUSG00000041057	Wdr43	100	89.985	ENSCGRG00001023204	Wdr43	100	90.441	Cricetulus_griseus_chok1gshd
ENSMUSG00000041057	Wdr43	89	89.256	ENSCGRG00000005070	Wdr43	99	89.769	Cricetulus_griseus_crigri
ENSMUSG00000041057	Wdr43	96	52.410	ENSCSEG00000016372	wdr43	98	53.311	Cynoglossus_semilaevis
ENSMUSG00000041057	Wdr43	65	56.250	ENSCVAG00000016604	wdr43	90	56.250	Cyprinodon_variegatus
ENSMUSG00000041057	Wdr43	100	54.307	ENSDARG00000077264	wdr43	100	54.015	Danio_rerio
ENSMUSG00000041057	Wdr43	100	84.242	ENSDNOG00000018841	WDR43	100	85.000	Dasypus_novemcinctus
ENSMUSG00000041057	Wdr43	100	79.853	ENSDORG00000000255	Wdr43	100	80.441	Dipodomys_ordii
ENSMUSG00000041057	Wdr43	73	96.503	ENSETEG00000004853	WDR43	71	96.503	Echinops_telfairi
ENSMUSG00000041057	Wdr43	87	46.787	ENSEBUG00000016586	wdr43	90	45.455	Eptatretus_burgeri
ENSMUSG00000041057	Wdr43	100	84.018	ENSEASG00005009046	WDR43	100	84.164	Equus_asinus_asinus
ENSMUSG00000041057	Wdr43	100	78.592	ENSECAG00000023777	WDR43	100	78.739	Equus_caballus
ENSMUSG00000041057	Wdr43	87	86.667	ENSEEUG00000006044	WDR43	82	86.667	Erinaceus_europaeus
ENSMUSG00000041057	Wdr43	100	55.865	ENSELUG00000019806	wdr43	96	55.279	Esox_lucius
ENSMUSG00000041057	Wdr43	100	82.794	ENSFCAG00000018872	WDR43	100	86.344	Felis_catus
ENSMUSG00000041057	Wdr43	87	66.946	ENSFALG00000011213	WDR43	99	65.785	Ficedula_albicollis
ENSMUSG00000041057	Wdr43	100	84.831	ENSFDAG00000007446	WDR43	100	85.272	Fukomys_damarensis
ENSMUSG00000041057	Wdr43	97	53.073	ENSFHEG00000021863	wdr43	98	53.423	Fundulus_heteroclitus
ENSMUSG00000041057	Wdr43	93	54.969	ENSGMOG00000001695	wdr43	100	53.125	Gadus_morhua
ENSMUSG00000041057	Wdr43	99	65.533	ENSGALG00000032529	WDR43	99	65.401	Gallus_gallus
ENSMUSG00000041057	Wdr43	97	52.624	ENSGAFG00000019525	wdr43	98	52.757	Gambusia_affinis
ENSMUSG00000041057	Wdr43	94	53.929	ENSGACG00000012843	wdr43	100	52.083	Gasterosteus_aculeatus
ENSMUSG00000041057	Wdr43	100	85.567	ENSGGOG00000015956	WDR43	100	85.272	Gorilla_gorilla
ENSMUSG00000041057	Wdr43	99	52.880	ENSHBUG00000011585	wdr43	96	51.895	Haplochromis_burtoni
ENSMUSG00000041057	Wdr43	100	84.389	ENSHGLG00000006912	WDR43	100	84.389	Heterocephalus_glaber_female
ENSMUSG00000041057	Wdr43	100	84.389	ENSHGLG00100007455	WDR43	100	84.389	Heterocephalus_glaber_male
ENSMUSG00000041057	Wdr43	100	51.594	ENSHCOG00000001160	wdr43	100	51.739	Hippocampus_comes
ENSMUSG00000041057	Wdr43	99	51.965	ENSIPUG00000015564	wdr43	100	52.464	Ictalurus_punctatus
ENSMUSG00000041057	Wdr43	100	87.353	ENSSTOG00000014687	WDR43	100	88.382	Ictidomys_tridecemlineatus
ENSMUSG00000041057	Wdr43	97	83.612	ENSJJAG00000016353	-	100	82.301	Jaculus_jaculus
ENSMUSG00000041057	Wdr43	89	84.959	ENSJJAG00000012314	-	97	84.959	Jaculus_jaculus
ENSMUSG00000041057	Wdr43	91	54.936	ENSKMAG00000009301	wdr43	100	52.830	Kryptolebias_marmoratus
ENSMUSG00000041057	Wdr43	100	51.820	ENSLBEG00000022773	wdr43	100	51.799	Labrus_bergylta
ENSMUSG00000041057	Wdr43	97	61.791	ENSLACG00000012425	WDR43	98	60.206	Latimeria_chalumnae
ENSMUSG00000041057	Wdr43	91	85.185	ENSLAFG00000005457	WDR43	100	85.185	Loxodonta_africana
ENSMUSG00000041057	Wdr43	100	85.000	ENSMFAG00000031243	WDR43	100	85.735	Macaca_fascicularis
ENSMUSG00000041057	Wdr43	100	85.000	ENSMMUG00000022268	WDR43	100	85.735	Macaca_mulatta
ENSMUSG00000041057	Wdr43	100	84.853	ENSMNEG00000035036	WDR43	100	85.588	Macaca_nemestrina
ENSMUSG00000041057	Wdr43	90	83.415	ENSMLEG00000022852	WDR43	91	82.720	Mandrillus_leucophaeus
ENSMUSG00000041057	Wdr43	96	50.229	ENSMAMG00000014056	wdr43	98	54.444	Mastacembelus_armatus
ENSMUSG00000041057	Wdr43	99	52.733	ENSMZEG00005009095	wdr43	100	51.749	Maylandia_zebra
ENSMUSG00000041057	Wdr43	87	68.121	ENSMGAG00000005248	WDR43	99	67.934	Meleagris_gallopavo
ENSMUSG00000041057	Wdr43	100	84.706	ENSMAUG00000007339	Wdr43	100	85.735	Mesocricetus_auratus
ENSMUSG00000041057	Wdr43	100	82.673	ENSMICG00000014276	WDR43	100	84.288	Microcebus_murinus
ENSMUSG00000041057	Wdr43	100	90.118	ENSMOCG00000017279	Wdr43	100	89.971	Microtus_ochrogaster
ENSMUSG00000041057	Wdr43	100	50.073	ENSMMOG00000004782	wdr43	100	49.635	Mola_mola
ENSMUSG00000041057	Wdr43	100	75.731	ENSMODG00000015545	WDR43	100	75.585	Monodelphis_domestica
ENSMUSG00000041057	Wdr43	69	50.313	ENSMALG00000007866	wdr43	100	48.310	Monopterus_albus
ENSMUSG00000041057	Wdr43	100	97.637	MGP_CAROLIEiJ_G0021861	Wdr43	100	97.637	Mus_caroli
ENSMUSG00000041057	Wdr43	99	94.170	MGP_PahariEiJ_G0020848	Wdr43	100	93.805	Mus_pahari
ENSMUSG00000041057	Wdr43	100	98.966	MGP_SPRETEiJ_G0022772	Wdr43	100	98.966	Mus_spretus
ENSMUSG00000041057	Wdr43	100	83.431	ENSMPUG00000017985	WDR43	100	86.070	Mustela_putorius_furo
ENSMUSG00000041057	Wdr43	100	80.826	ENSMLUG00000010666	WDR43	100	81.711	Myotis_lucifugus
ENSMUSG00000041057	Wdr43	99	88.972	ENSNGAG00000004446	Wdr43	100	90.147	Nannospalax_galili
ENSMUSG00000041057	Wdr43	99	52.585	ENSNBRG00000011062	wdr43	100	51.603	Neolamprologus_brichardi
ENSMUSG00000041057	Wdr43	100	84.831	ENSNLEG00000015361	WDR43	100	85.567	Nomascus_leucogenys
ENSMUSG00000041057	Wdr43	89	68.491	ENSOPRG00000007219	WDR43	100	68.709	Ochotona_princeps
ENSMUSG00000041057	Wdr43	100	84.831	ENSODEG00000006870	WDR43	100	85.147	Octodon_degus
ENSMUSG00000041057	Wdr43	99	53.176	ENSONIG00000019540	wdr43	100	52.624	Oreochromis_niloticus
ENSMUSG00000041057	Wdr43	89	69.079	ENSOANG00000014467	WDR43	100	68.421	Ornithorhynchus_anatinus
ENSMUSG00000041057	Wdr43	95	84.722	ENSOCUG00000003126	WDR43	94	81.711	Oryctolagus_cuniculus
ENSMUSG00000041057	Wdr43	99	51.551	ENSORLG00000018236	wdr43	100	51.684	Oryzias_latipes
ENSMUSG00000041057	Wdr43	99	51.551	ENSORLG00020008182	wdr43	100	51.245	Oryzias_latipes_hni
ENSMUSG00000041057	Wdr43	99	51.622	ENSORLG00015005256	wdr43	100	51.391	Oryzias_latipes_hsok
ENSMUSG00000041057	Wdr43	99	51.403	ENSOMEG00000009928	wdr43	92	51.245	Oryzias_melastigma
ENSMUSG00000041057	Wdr43	99	84.547	ENSOGAG00000009879	WDR43	97	85.882	Otolemur_garnettii
ENSMUSG00000041057	Wdr43	73	83.400	ENSOARG00000019566	WDR43	100	85.200	Ovis_aries
ENSMUSG00000041057	Wdr43	89	83.609	ENSPPAG00000041978	WDR43	100	84.132	Pan_paniscus
ENSMUSG00000041057	Wdr43	100	81.738	ENSPPRG00000001900	WDR43	100	82.180	Panthera_pardus
ENSMUSG00000041057	Wdr43	100	82.673	ENSPTIG00000005982	WDR43	100	83.284	Panthera_tigris_altaica
ENSMUSG00000041057	Wdr43	100	84.978	ENSPTRG00000011792	WDR43	100	85.441	Pan_troglodytes
ENSMUSG00000041057	Wdr43	100	85.000	ENSPANG00000018846	WDR43	100	85.735	Papio_anubis
ENSMUSG00000041057	Wdr43	100	54.136	ENSPKIG00000022935	wdr43	100	53.991	Paramormyrops_kingsleyae
ENSMUSG00000041057	Wdr43	73	67.465	ENSPSIG00000014217	WDR43	100	66.667	Pelodiscus_sinensis
ENSMUSG00000041057	Wdr43	100	49.854	ENSPMGG00000001169	wdr43	100	49.781	Periophthalmus_magnuspinnatus
ENSMUSG00000041057	Wdr43	100	89.589	ENSPEMG00000021715	Wdr43	100	89.443	Peromyscus_maniculatus_bairdii
ENSMUSG00000041057	Wdr43	87	52.326	ENSPMAG00000006054	wdr43	99	52.349	Petromyzon_marinus
ENSMUSG00000041057	Wdr43	88	76.373	ENSPCIG00000011948	WDR43	98	74.762	Phascolarctos_cinereus
ENSMUSG00000041057	Wdr43	96	52.338	ENSPFOG00000011371	wdr43	98	52.232	Poecilia_formosa
ENSMUSG00000041057	Wdr43	96	52.489	ENSPLAG00000002041	wdr43	98	52.381	Poecilia_latipinna
ENSMUSG00000041057	Wdr43	96	52.331	ENSPMEG00000020902	wdr43	98	54.337	Poecilia_mexicana
ENSMUSG00000041057	Wdr43	97	51.351	ENSPREG00000004959	wdr43	98	51.320	Poecilia_reticulata
ENSMUSG00000041057	Wdr43	99	84.821	ENSPPYG00000012526	WDR43	94	85.714	Pongo_abelii
ENSMUSG00000041057	Wdr43	99	74.107	ENSPCAG00000011610	WDR43	97	76.799	Procavia_capensis
ENSMUSG00000041057	Wdr43	100	83.407	ENSPCOG00000000476	WDR43	100	85.609	Propithecus_coquereli
ENSMUSG00000041057	Wdr43	99	75.483	ENSPVAG00000013850	WDR43	94	78.940	Pteropus_vampyrus
ENSMUSG00000041057	Wdr43	99	52.733	ENSPNYG00000023080	wdr43	100	51.749	Pundamilia_nyererei
ENSMUSG00000041057	Wdr43	100	53.623	ENSPNAG00000023664	wdr43	100	53.035	Pygocentrus_nattereri
ENSMUSG00000041057	Wdr43	100	91.298	ENSRNOG00000026316	Wdr43	100	90.855	Rattus_norvegicus
ENSMUSG00000041057	Wdr43	100	85.272	ENSRBIG00000026670	WDR43	100	86.009	Rhinopithecus_bieti
ENSMUSG00000041057	Wdr43	100	85.272	ENSRROG00000035929	WDR43	100	86.009	Rhinopithecus_roxellana
ENSMUSG00000041057	Wdr43	100	83.947	ENSSBOG00000021596	WDR43	100	84.683	Saimiri_boliviensis_boliviensis
ENSMUSG00000041057	Wdr43	88	76.667	ENSSHAG00000009672	WDR43	95	76.341	Sarcophilus_harrisii
ENSMUSG00000041057	Wdr43	93	41.850	ENSSFOG00015004013	-	90	43.890	Scleropages_formosus
ENSMUSG00000041057	Wdr43	100	54.427	ENSSFOG00015007173	wdr43	90	54.467	Scleropages_formosus
ENSMUSG00000041057	Wdr43	91	54.372	ENSSMAG00000015328	wdr43	100	52.312	Scophthalmus_maximus
ENSMUSG00000041057	Wdr43	99	52.655	ENSSDUG00000018532	wdr43	100	53.130	Seriola_dumerili
ENSMUSG00000041057	Wdr43	91	54.372	ENSSLDG00000015626	wdr43	99	54.976	Seriola_lalandi_dorsalis
ENSMUSG00000041057	Wdr43	70	88.750	ENSSARG00000013358	WDR43	78	88.353	Sorex_araneus
ENSMUSG00000041057	Wdr43	100	65.698	ENSSPUG00000006260	WDR43	100	66.328	Sphenodon_punctatus
ENSMUSG00000041057	Wdr43	91	53.589	ENSSPAG00000002830	wdr43	91	54.545	Stegastes_partitus
ENSMUSG00000041057	Wdr43	100	84.288	ENSSSCG00000008536	WDR43	100	84.875	Sus_scrofa
ENSMUSG00000041057	Wdr43	96	64.438	ENSTGUG00000005464	WDR43	100	64.732	Taeniopygia_guttata
ENSMUSG00000041057	Wdr43	99	51.245	ENSTRUG00000009764	wdr43	100	51.599	Takifugu_rubripes
ENSMUSG00000041057	Wdr43	96	53.625	ENSTNIG00000008907	wdr43	100	52.193	Tetraodon_nigroviridis
ENSMUSG00000041057	Wdr43	77	86.502	ENSTBEG00000007577	WDR43	99	86.450	Tupaia_belangeri
ENSMUSG00000041057	Wdr43	89	82.450	ENSTTRG00000008268	WDR43	84	84.298	Tursiops_truncatus
ENSMUSG00000041057	Wdr43	100	84.018	ENSUAMG00000015504	WDR43	100	85.777	Ursus_americanus
ENSMUSG00000041057	Wdr43	100	83.871	ENSUMAG00000020071	WDR43	100	85.630	Ursus_maritimus
ENSMUSG00000041057	Wdr43	72	75.549	ENSVPAG00000001632	WDR43	68	77.429	Vicugna_pacos
ENSMUSG00000041057	Wdr43	91	87.702	ENSVVUG00000002890	WDR43	99	87.702	Vulpes_vulpes
ENSMUSG00000041057	Wdr43	83	55.888	ENSXCOG00000011240	wdr43	98	51.121	Xiphophorus_couchianus
ENSMUSG00000041057	Wdr43	96	52.782	ENSXMAG00000018379	wdr43	98	52.530	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001650	fibrillar center	-	ISO	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0045943	positive regulation of transcription by RNA polymerase I	-	ISO	Process
GO:2000234	positive regulation of rRNA processing	-	ISO	Process