EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041133 (Gene tree)
Gene ID: 24061
Gene Symbol: Smc1a
Alias: 5830426I24Rik|SB1.8|SMCB|Smc1|Smc1alpha|Smc1l1
Full Name: structural maintenance of chromosomes 1A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 46267
Position: chrX: 152016428-152062694
Accession: 1344345
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000131395	-	499	-	-	- (aa)	-	-
ENSMUST00000124681	-	620	-	-	- (aa)	-	-
ENSMUST00000145518	-	1824	-	ENSMUSP00000138113	54 (aa)	-	S4R179
ENSMUST00000141457	-	591	-	-	- (aa)	-	-
ENSMUST00000045312	-	4691	XM_006528840	ENSMUSP00000044645	1233 (aa)	XP_006528903	Q9CU62
ENSMUST00000135172	-	617	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000041133's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04110	Cell cycle	KEGG
mmu04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041133's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041133	Smc1a	100	99.838	ENSG00000072501	SMC1A	100	99.838	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000776	kinetochore	-	ISO	Component
GO:0003682	chromatin binding	20720539.22415368.	IDA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0005515	protein binding	10375619.16632484.20159591.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	10375619.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007062	sister chromatid cohesion	-	ISO	Process
GO:0007064	mitotic sister chromatid cohesion	-	IEA	Process
GO:0008278	cohesin complex	10375619.	IDA	Component
GO:0008278	cohesin complex	-	ISO	Component
GO:0016363	nuclear matrix	-	ISO	Component
GO:0019827	stem cell population maintenance	20720539.	IMP	Process
GO:0030893	meiotic cohesin complex	21527826.	IDA	Component
GO:0030893	meiotic cohesin complex	-	ISO	Component
GO:0032876	negative regulation of DNA endoreduplication	-	ISO	Process
GO:0036033	mediator complex binding	20720539.	IDA	Function
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0051276	chromosome organization	-	IEA	Process
GO:0051301	cell division	-	IEA	Process
GO:0051321	meiotic cell cycle	12759374.	IPI	Process
GO:0051321	meiotic cell cycle	-	ISO	Process
GO:0072423	response to DNA damage checkpoint signaling	-	ISO	Process
GO:0097431	mitotic spindle pole	-	ISO	Component
GO:1901673	regulation of mitotic spindle assembly	-	ISO	Process