EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041297 (Gene tree)
Gene ID: 69562
Gene Symbol: Cdk13
Alias: 2310015O17Rik|Cdc2l5
Full Name: cyclin-dependent kinase 13
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 94783
Position: chr13: 17710315-17805097
Accession: 1916812
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000222800	-	3858	XM_011244344	ENSMUSP00000152539	837 (aa)	XP_011242646	A0A1Y7VLM0
ENSMUST00000042365	-	5202	XM_006516766	ENSMUSP00000036013	1511 (aa)	XP_006516829	Q69ZA1
ENSMUST00000222359	-	972	-	-	- (aa)	-	-
ENSMUST00000222848	-	1062	-	-	- (aa)	-	-
ENSMUST00000220714	-	477	-	-	- (aa)	-	-
ENSMUST00000221775	-	662	-	ENSMUSP00000152546	221 (aa)	-	A0A1Y7VNQ1
ENSMUST00000223490	-	12548	XM_006516767	ENSMUSP00000152820	1451 (aa)	XP_006516830	Q69ZA1

Gene Model

Click here to download ENSMUSG00000041297's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041297's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041297	Cdk13	100	98.276	ENSG00000065883	CDK13	100	99.163	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000307	cyclin-dependent protein kinase holoenzyme complex	21873635.	IBA	Component
GO:0000380	alternative mRNA splicing, via spliceosome	17261272.	IDA	Process
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0002945	cyclin K-CDK13 complex	-	ISO	Component
GO:0004672	protein kinase activity	-	IEA	Function
GO:0004674	protein serine/threonine kinase activity	-	IEA	Function
GO:0004693	cyclin-dependent protein serine/threonine kinase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005694	chromosome	21873635.	IBA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006368	transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006468	protein phosphorylation	21873635.	IBA	Process
GO:0008024	cyclin/CDK positive transcription elongation factor complex	21873635.	IBA	Component
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008353	RNA polymerase II CTD heptapeptide repeat kinase activity	21873635.	IBA	Function
GO:0008353	RNA polymerase II CTD heptapeptide repeat kinase activity	-	ISO	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0019901	protein kinase binding	22547058.	IDA	Function
GO:0019908	nuclear cyclin-dependent protein kinase holoenzyme complex	17261272.	IDA	Component
GO:0030097	hemopoiesis	-	ISO	Process
GO:0030332	cyclin binding	21873635.	IBA	Function
GO:0030332	cyclin binding	17261272.	IPI	Function
GO:0030332	cyclin binding	-	ISO	Function
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0070816	phosphorylation of RNA polymerase II C-terminal domain	21873635.	IBA	Process
GO:0070816	phosphorylation of RNA polymerase II C-terminal domain	-	ISO	Process
GO:2000737	negative regulation of stem cell differentiation	22547058.	IMP	Process