EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041360 (Gene tree)
Gene ID: 52874
Gene Symbol: Pum3
Alias: 1110069H02Rik|D19Bwg1357e
Full Name: pumilio RNA-binding family member 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 41119 bases
Position: chr19:27388702-27429820
Accession: 106253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000075573	CPL	PF08144.11	1.8e-50	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000076219	-	3462	XM_006527183	ENSMUSP00000075573	648 (aa)	XP_006527246	A0A0N4SUH4

Gene Model

Click here to download ENSMUSG00000041360's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041360's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041360	Pum3	99	89.506	ENSG00000080608	PUM3	100	89.506	Homo_sapiens
ENSMUSG00000041360	Pum3	89	56.114	ENSAPOG00000020252	pum3	99	52.950	Acanthochromis_polyacanthus
ENSMUSG00000041360	Pum3	99	89.026	ENSAMEG00000012187	PUM3	100	89.026	Ailuropoda_melanoleuca
ENSMUSG00000041360	Pum3	86	54.189	ENSACIG00000009786	pum3	88	55.388	Amphilophus_citrinellus
ENSMUSG00000041360	Pum3	99	54.173	ENSAOCG00000004439	pum3	99	53.788	Amphiprion_ocellaris
ENSMUSG00000041360	Pum3	99	54.173	ENSAPEG00000020523	pum3	99	53.788	Amphiprion_percula
ENSMUSG00000041360	Pum3	82	61.121	ENSATEG00000005799	pum3	82	61.101	Anabas_testudineus
ENSMUSG00000041360	Pum3	96	72.830	ENSAPLG00000002920	PUM3	100	72.830	Anas_platyrhynchos
ENSMUSG00000041360	Pum3	93	67.273	ENSACAG00000003174	PUM3	99	68.430	Anolis_carolinensis
ENSMUSG00000041360	Pum3	99	89.954	ENSANAG00000024520	PUM3	100	89.954	Aotus_nancymaae
ENSMUSG00000041360	Pum3	96	55.385	ENSACLG00000001017	pum3	95	54.688	Astatotilapia_calliptera
ENSMUSG00000041360	Pum3	92	62.197	ENSAMXG00000020911	pum3	95	63.894	Astyanax_mexicanus
ENSMUSG00000041360	Pum3	99	88.717	ENSBTAG00000013357	PUM3	100	88.717	Bos_taurus
ENSMUSG00000041360	Pum3	75	31.992	WBGene00014165	puf-12	64	31.992	Caenorhabditis_elegans
ENSMUSG00000041360	Pum3	99	89.181	ENSCJAG00000010917	PUM3	100	89.181	Callithrix_jacchus
ENSMUSG00000041360	Pum3	100	88.580	ENSCAFG00000002035	PUM3	100	88.580	Canis_familiaris
ENSMUSG00000041360	Pum3	100	88.426	ENSCAFG00020026867	PUM3	100	88.426	Canis_lupus_dingo
ENSMUSG00000041360	Pum3	99	88.563	ENSCHIG00000021559	PUM3	100	88.563	Capra_hircus
ENSMUSG00000041360	Pum3	99	88.099	ENSTSYG00000007481	PUM3	100	88.099	Carlito_syrichta
ENSMUSG00000041360	Pum3	100	84.746	ENSCAPG00000010592	-	100	84.746	Cavia_aperea
ENSMUSG00000041360	Pum3	100	86.420	ENSCPOG00000008552	-	100	86.420	Cavia_porcellus
ENSMUSG00000041360	Pum3	99	89.490	ENSCCAG00000032650	PUM3	100	89.490	Cebus_capucinus
ENSMUSG00000041360	Pum3	99	90.093	ENSCATG00000024880	PUM3	100	89.954	Cercocebus_atys
ENSMUSG00000041360	Pum3	100	89.043	ENSCLAG00000011892	PUM3	100	89.043	Chinchilla_lanigera
ENSMUSG00000041360	Pum3	99	90.108	ENSCSAG00000008691	PUM3	100	90.108	Chlorocebus_sabaeus
ENSMUSG00000041360	Pum3	100	67.747	ENSCHOG00000002535	PUM3	95	67.747	Choloepus_hoffmanni
ENSMUSG00000041360	Pum3	99	71.803	ENSCPBG00000025470	PUM3	95	71.032	Chrysemys_picta_bellii
ENSMUSG00000041360	Pum3	83	40.180	ENSCING00000024199	-	87	41.344	Ciona_intestinalis
ENSMUSG00000041360	Pum3	80	41.635	ENSCSAVG00000006072	-	99	40.952	Ciona_savignyi
ENSMUSG00000041360	Pum3	99	90.263	ENSCANG00000006142	PUM3	100	90.263	Colobus_angolensis_palliatus
ENSMUSG00000041360	Pum3	100	93.210	ENSCGRG00001016402	Pum3	100	93.210	Cricetulus_griseus_chok1gshd
ENSMUSG00000041360	Pum3	100	93.210	ENSCGRG00000010207	Pum3	100	93.210	Cricetulus_griseus_crigri
ENSMUSG00000041360	Pum3	89	56.849	ENSCSEG00000001565	pum3	99	56.604	Cynoglossus_semilaevis
ENSMUSG00000041360	Pum3	62	49.630	ENSCVAG00000006550	pum3	95	49.632	Cyprinodon_variegatus
ENSMUSG00000041360	Pum3	94	65.127	ENSDARG00000087779	pum3	99	64.331	Danio_rerio
ENSMUSG00000041360	Pum3	100	75.883	ENSDNOG00000008157	PUM3	70	76.271	Dasypus_novemcinctus
ENSMUSG00000041360	Pum3	81	82.543	ENSETEG00000015331	PUM3	81	82.543	Echinops_telfairi
ENSMUSG00000041360	Pum3	80	41.276	ENSEBUG00000011586	pum3	76	42.023	Eptatretus_burgeri
ENSMUSG00000041360	Pum3	99	90.557	ENSEASG00005010350	PUM3	100	90.417	Equus_asinus_asinus
ENSMUSG00000041360	Pum3	99	90.557	ENSECAG00000017193	PUM3	100	90.417	Equus_caballus
ENSMUSG00000041360	Pum3	93	79.602	ENSEEUG00000010314	PUM3	100	79.602	Erinaceus_europaeus
ENSMUSG00000041360	Pum3	96	61.672	ENSELUG00000002215	pum3	98	61.672	Esox_lucius
ENSMUSG00000041360	Pum3	99	71.626	ENSFALG00000010509	PUM3	100	71.626	Ficedula_albicollis
ENSMUSG00000041360	Pum3	100	88.426	ENSFDAG00000021027	PUM3	100	88.426	Fukomys_damarensis
ENSMUSG00000041360	Pum3	89	57.853	ENSFHEG00000015576	pum3	99	57.853	Fundulus_heteroclitus
ENSMUSG00000041360	Pum3	83	59.888	ENSGMOG00000014217	pum3	97	59.847	Gadus_morhua
ENSMUSG00000041360	Pum3	99	70.046	ENSGALG00000010178	PUM3	100	70.046	Gallus_gallus
ENSMUSG00000041360	Pum3	55	58.840	ENSGAFG00000001930	pum3	62	58.840	Gambusia_affinis
ENSMUSG00000041360	Pum3	82	58.459	ENSGACG00000017878	pum3	96	58.444	Gasterosteus_aculeatus
ENSMUSG00000041360	Pum3	99	71.716	ENSGAGG00000018983	PUM3	99	72.249	Gopherus_agassizii
ENSMUSG00000041360	Pum3	99	89.799	ENSGGOG00000006143	PUM3	100	89.799	Gorilla_gorilla
ENSMUSG00000041360	Pum3	99	48.462	ENSHBUG00000012903	pum3	96	49.016	Haplochromis_burtoni
ENSMUSG00000041360	Pum3	100	88.272	ENSHGLG00000015868	-	100	88.272	Heterocephalus_glaber_female
ENSMUSG00000041360	Pum3	100	88.272	ENSHGLG00100018825	PUM3	100	88.408	Heterocephalus_glaber_male
ENSMUSG00000041360	Pum3	92	57.749	ENSHCOG00000010306	pum3	96	55.267	Hippocampus_comes
ENSMUSG00000041360	Pum3	87	66.549	ENSIPUG00000024801	pum3	99	62.540	Ictalurus_punctatus
ENSMUSG00000041360	Pum3	100	90.895	ENSSTOG00000009586	PUM3	100	90.895	Ictidomys_tridecemlineatus
ENSMUSG00000041360	Pum3	99	87.790	ENSJJAG00000012563	Pum3	99	87.790	Jaculus_jaculus
ENSMUSG00000041360	Pum3	95	54.502	ENSKMAG00000010277	pum3	98	54.531	Kryptolebias_marmoratus
ENSMUSG00000041360	Pum3	99	53.204	ENSLBEG00000012213	pum3	99	53.064	Labrus_bergylta
ENSMUSG00000041360	Pum3	99	66.309	ENSLACG00000008312	PUM3	100	66.309	Latimeria_chalumnae
ENSMUSG00000041360	Pum3	96	65.605	ENSLOCG00000012529	pum3	99	65.605	Lepisosteus_oculatus
ENSMUSG00000041360	Pum3	100	86.883	ENSLAFG00000017341	PUM3	100	86.883	Loxodonta_africana
ENSMUSG00000041360	Pum3	99	90.108	ENSMFAG00000001430	PUM3	100	90.108	Macaca_fascicularis
ENSMUSG00000041360	Pum3	99	90.108	ENSMMUG00000002362	PUM3	99	90.108	Macaca_mulatta
ENSMUSG00000041360	Pum3	99	90.108	ENSMNEG00000035288	PUM3	100	90.108	Macaca_nemestrina
ENSMUSG00000041360	Pum3	99	90.417	ENSMLEG00000034820	PUM3	100	90.417	Mandrillus_leucophaeus
ENSMUSG00000041360	Pum3	85	58.053	ENSMAMG00000022861	pum3	81	60.266	Mastacembelus_armatus
ENSMUSG00000041360	Pum3	96	55.556	ENSMZEG00005014205	pum3	93	54.531	Maylandia_zebra
ENSMUSG00000041360	Pum3	99	63.609	ENSMGAG00000002255	PUM3	100	63.609	Meleagris_gallopavo
ENSMUSG00000041360	Pum3	100	93.519	ENSMAUG00000009733	Pum3	100	93.519	Mesocricetus_auratus
ENSMUSG00000041360	Pum3	99	89.009	ENSMICG00000045916	PUM3	87	89.009	Microcebus_murinus
ENSMUSG00000041360	Pum3	100	93.981	ENSMOCG00000019519	-	100	93.981	Microtus_ochrogaster
ENSMUSG00000041360	Pum3	99	89.645	ENSMOCG00000014830	-	100	89.181	Microtus_ochrogaster
ENSMUSG00000041360	Pum3	92	52.435	ENSMMOG00000012184	pum3	99	50.546	Mola_mola
ENSMUSG00000041360	Pum3	99	68.516	ENSMODG00000015417	PUM3	99	73.281	Monodelphis_domestica
ENSMUSG00000041360	Pum3	97	53.628	ENSMALG00000022164	pum3	93	54.574	Monopterus_albus
ENSMUSG00000041360	Pum3	100	98.611	MGP_CAROLIEiJ_G0022845	Pum3	100	98.611	Mus_caroli
ENSMUSG00000041360	Pum3	99	97.991	MGP_PahariEiJ_G0014338	Pum3	99	97.991	Mus_pahari
ENSMUSG00000041360	Pum3	100	99.228	MGP_SPRETEiJ_G0023763	Pum3	100	99.228	Mus_spretus
ENSMUSG00000041360	Pum3	99	86.708	ENSMPUG00000005125	PUM3	100	86.708	Mustela_putorius_furo
ENSMUSG00000041360	Pum3	99	87.152	ENSMLUG00000002309	PUM3	99	87.152	Myotis_lucifugus
ENSMUSG00000041360	Pum3	99	87.211	ENSNGAG00000019468	Pum3	100	87.211	Nannospalax_galili
ENSMUSG00000041360	Pum3	91	53.950	ENSNBRG00000021370	pum3	79	58.135	Neolamprologus_brichardi
ENSMUSG00000041360	Pum3	99	89.645	ENSNLEG00000008712	PUM3	100	89.645	Nomascus_leucogenys
ENSMUSG00000041360	Pum3	75	59.138	ENSMEUG00000013606	-	96	57.645	Notamacropus_eugenii
ENSMUSG00000041360	Pum3	79	76.333	ENSOPRG00000004225	-	79	76.333	Ochotona_princeps
ENSMUSG00000041360	Pum3	99	82.615	ENSODEG00000016477	-	100	82.615	Octodon_degus
ENSMUSG00000041360	Pum3	100	87.654	ENSODEG00000003625	-	100	87.654	Octodon_degus
ENSMUSG00000041360	Pum3	99	54.062	ENSONIG00000012733	pum3	95	54.062	Oreochromis_niloticus
ENSMUSG00000041360	Pum3	81	78.828	ENSOANG00000014995	PUM3	97	78.828	Ornithorhynchus_anatinus
ENSMUSG00000041360	Pum3	99	88.717	ENSOCUG00000004189	-	100	88.717	Oryctolagus_cuniculus
ENSMUSG00000041360	Pum3	99	87.733	ENSOCUG00000026104	-	100	87.733	Oryctolagus_cuniculus
ENSMUSG00000041360	Pum3	94	53.519	ENSORLG00000014935	pum3	99	52.329	Oryzias_latipes
ENSMUSG00000041360	Pum3	91	54.377	ENSORLG00020002841	pum3	99	52.329	Oryzias_latipes_hni
ENSMUSG00000041360	Pum3	96	52.941	ENSORLG00015015906	pum3	99	52.167	Oryzias_latipes_hsok
ENSMUSG00000041360	Pum3	91	54.392	ENSOMEG00000009427	pum3	97	51.163	Oryzias_melastigma
ENSMUSG00000041360	Pum3	99	65.749	ENSOGAG00000033481	-	99	64.373	Otolemur_garnettii
ENSMUSG00000041360	Pum3	99	87.500	ENSOGAG00000008125	-	100	87.500	Otolemur_garnettii
ENSMUSG00000041360	Pum3	99	87.982	ENSOARG00000013337	PUM3	100	87.982	Ovis_aries
ENSMUSG00000041360	Pum3	99	89.660	ENSPPAG00000041337	PUM3	100	89.660	Pan_paniscus
ENSMUSG00000041360	Pum3	99	86.862	ENSPPRG00000000809	PUM3	100	86.862	Panthera_pardus
ENSMUSG00000041360	Pum3	99	87.326	ENSPTIG00000021934	PUM3	100	87.326	Panthera_tigris_altaica
ENSMUSG00000041360	Pum3	99	89.815	ENSPTRG00000020735	PUM3	100	89.815	Pan_troglodytes
ENSMUSG00000041360	Pum3	99	90.263	ENSPANG00000025118	PUM3	100	90.263	Papio_anubis
ENSMUSG00000041360	Pum3	99	61.985	ENSPKIG00000022249	pum3	99	63.802	Paramormyrops_kingsleyae
ENSMUSG00000041360	Pum3	99	71.870	ENSPSIG00000016272	PUM3	100	71.870	Pelodiscus_sinensis
ENSMUSG00000041360	Pum3	76	62.118	ENSPMGG00000021261	pum3	98	62.118	Periophthalmus_magnuspinnatus
ENSMUSG00000041360	Pum3	89	88.679	ENSPEMG00000019340	-	100	88.679	Peromyscus_maniculatus_bairdii
ENSMUSG00000041360	Pum3	99	74.593	ENSPCIG00000030598	PUM3	93	74.593	Phascolarctos_cinereus
ENSMUSG00000041360	Pum3	91	55.075	ENSPFOG00000001719	pum3	94	55.743	Poecilia_formosa
ENSMUSG00000041360	Pum3	91	55.354	ENSPLAG00000020010	pum3	99	52.816	Poecilia_latipinna
ENSMUSG00000041360	Pum3	91	55.629	ENSPMEG00000017451	pum3	99	52.968	Poecilia_mexicana
ENSMUSG00000041360	Pum3	51	45.833	ENSPREG00000019478	-	69	63.684	Poecilia_reticulata
ENSMUSG00000041360	Pum3	99	89.799	ENSPPYG00000019255	PUM3	100	89.799	Pongo_abelii
ENSMUSG00000041360	Pum3	100	75.617	ENSPCAG00000005797	PUM3	95	75.617	Procavia_capensis
ENSMUSG00000041360	Pum3	99	88.717	ENSPCOG00000027325	PUM3	100	88.717	Propithecus_coquereli
ENSMUSG00000041360	Pum3	100	86.111	ENSPVAG00000016135	PUM3	95	86.111	Pteropus_vampyrus
ENSMUSG00000041360	Pum3	96	55.745	ENSPNYG00000016124	pum3	96	54.688	Pundamilia_nyererei
ENSMUSG00000041360	Pum3	89	65.172	ENSPNAG00000026524	pum3	92	65.172	Pygocentrus_nattereri
ENSMUSG00000041360	Pum3	99	92.581	ENSRNOG00000048356	RGD1308750	100	92.581	Rattus_norvegicus
ENSMUSG00000041360	Pum3	99	92.890	ENSRNOG00000012574	Pum3	100	92.890	Rattus_norvegicus
ENSMUSG00000041360	Pum3	99	90.402	ENSRBIG00000036924	PUM3	100	90.108	Rhinopithecus_bieti
ENSMUSG00000041360	Pum3	99	90.263	ENSRROG00000041089	PUM3	100	90.263	Rhinopithecus_roxellana
ENSMUSG00000041360	Pum3	99	90.108	ENSSBOG00000028066	PUM3	100	90.108	Saimiri_boliviensis_boliviensis
ENSMUSG00000041360	Pum3	99	77.025	ENSSHAG00000003730	PUM3	100	76.733	Sarcophilus_harrisii
ENSMUSG00000041360	Pum3	92	64.803	ENSSFOG00015018778	pum3	95	64.803	Scleropages_formosus
ENSMUSG00000041360	Pum3	86	58.676	ENSSMAG00000013236	pum3	99	53.835	Scophthalmus_maximus
ENSMUSG00000041360	Pum3	89	57.621	ENSSDUG00000001887	pum3	99	53.926	Seriola_dumerili
ENSMUSG00000041360	Pum3	99	54.286	ENSSLDG00000015766	pum3	99	53.662	Seriola_lalandi_dorsalis
ENSMUSG00000041360	Pum3	96	83.845	ENSSARG00000000579	PUM3	100	83.845	Sorex_araneus
ENSMUSG00000041360	Pum3	99	68.624	ENSSPUG00000001707	PUM3	100	68.624	Sphenodon_punctatus
ENSMUSG00000041360	Pum3	99	51.880	ENSSPAG00000003976	pum3	97	52.786	Stegastes_partitus
ENSMUSG00000041360	Pum3	100	88.272	ENSSSCG00000005227	PUM3	100	88.272	Sus_scrofa
ENSMUSG00000041360	Pum3	99	71.561	ENSTGUG00000005339	PUM3	100	71.561	Taeniopygia_guttata
ENSMUSG00000041360	Pum3	96	55.335	ENSTRUG00000004074	pum3	79	61.450	Takifugu_rubripes
ENSMUSG00000041360	Pum3	90	58.092	ENSTNIG00000010325	pum3	98	56.958	Tetraodon_nigroviridis
ENSMUSG00000041360	Pum3	86	70.197	ENSTBEG00000013058	PUM3	86	70.197	Tupaia_belangeri
ENSMUSG00000041360	Pum3	100	80.093	ENSTTRG00000001062	PUM3	96	80.093	Tursiops_truncatus
ENSMUSG00000041360	Pum3	100	80.247	ENSUMAG00000018443	PUM3	99	83.681	Ursus_maritimus
ENSMUSG00000041360	Pum3	100	87.673	ENSVPAG00000010766	PUM3	99	87.673	Vicugna_pacos
ENSMUSG00000041360	Pum3	100	88.580	ENSVVUG00000006527	PUM3	100	88.580	Vulpes_vulpes
ENSMUSG00000041360	Pum3	99	58.986	ENSXETG00000011707	pum3	96	60.159	Xenopus_tropicalis
ENSMUSG00000041360	Pum3	91	53.821	ENSXCOG00000006725	pum3	87	56.489	Xiphophorus_couchianus
ENSMUSG00000041360	Pum3	91	55.941	ENSXMAG00000002926	pum3	89	55.440	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0010835	regulation of protein ADP-ribosylation	-	ISO	Process