EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041375 (Gene tree)
Gene ID: 243846
Gene Symbol: Ccdc9
Alias: 2600011L02Rik
Full Name: coiled-coil domain containing 9
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 12754
Position: chr7: 16274042-16286795
Accession: 1921443
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000118976	-	2175	XM_006539921	ENSMUSP00000114088	589 (aa)	XP_006539984	D3YW42
ENSMUST00000172670	-	867	-	-	- (aa)	-	-
ENSMUST00000146609	-	387	-	ENSMUSP00000134106	8 (aa)	-	A0A0G2JDC5
ENSMUST00000146085	-	546	-	ENSMUSP00000134049	182 (aa)	-	G3UYE3
ENSMUST00000150528	-	354	-	ENSMUSP00000133863	21 (aa)	-	G3UXX6
ENSMUST00000144186	-	391	-	-	- (aa)	-	-
ENSMUST00000174270	-	630	-	ENSMUSP00000133798	99 (aa)	-	G3UXR7
ENSMUST00000124084	-	2773	-	-	- (aa)	-	-
ENSMUST00000041010	-	2379	-	ENSMUSP00000035597	544 (aa)	-	G3X927
ENSMUST00000145519	-	283	-	ENSMUSP00000119694	46 (aa)	-	D3Z1Q6
ENSMUST00000129447	-	748	-	-	- (aa)	-	-
ENSMUST00000131963	-	394	-	-	- (aa)	-	-
ENSMUST00000148741	-	479	-	ENSMUSP00000122708	39 (aa)	-	D6RFU6
ENSMUST00000137993	-	324	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000041375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041375's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041375	Ccdc9	98	97.778	ENSG00000105321	CCDC9	100	98.214	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process