EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000172658	-	382	-	-	- (aa)	-	-
ENSMUST00000151285	-	1820	-	ENSMUSP00000117282	430 (aa)	-	F6YCH1
ENSMUST00000111895	-	2688	-	-	- (aa)	-	-
ENSMUST00000048263	-	6351	XM_006518824	ENSMUSP00000040232	1200 (aa)	XP_006518887	Q65Z40
ENSMUST00000090027	-	4185	-	ENSMUSP00000087481	1194 (aa)	-	B7ZP47
ENSMUST00000169910	-	4066	-	ENSMUSP00000130547	1200 (aa)	-	Q65Z40
ENSMUST00000174559	-	479	-	ENSMUSP00000133779	160 (aa)	-	G3UXQ2

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041408	Wapl	99	98.052	ENSG00000062650	WAPL	100	98.052	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	23975099.	IGI	Process
GO:0000278	mitotic cell cycle	23975099.	IMP	Process
GO:0000785	chromatin	23920377.	IDA	Component
GO:0000785	chromatin	-	ISO	Component
GO:0000795	synaptonemal complex	15620708.	IDA	Component
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0007049	cell cycle	-	IEA	Process
GO:0008156	negative regulation of DNA replication	-	ISO	Process
GO:0008278	cohesin complex	-	ISO	Component
GO:0009636	response to toxic substance	15620708.	IDA	Process
GO:0035562	negative regulation of chromatin binding	-	ISO	Process
GO:0045132	meiotic chromosome segregation	21873635.	IBA	Process
GO:0045875	negative regulation of sister chromatid cohesion	-	ISO	Process
GO:0048146	positive regulation of fibroblast proliferation	23975099.	IMP	Process
GO:0051301	cell division	-	IEA	Process
GO:0051983	regulation of chromosome segregation	23975099.	IMP	Process
GO:0060623	regulation of chromosome condensation	21873635.	IBA	Process
GO:0060623	regulation of chromosome condensation	23975099.	IMP	Process
GO:0071168	protein localization to chromatin	-	ISO	Process
GO:0071922	regulation of cohesin loading	21873635.	IBA	Process
GO:0071922	regulation of cohesin loading	23975099.	IMP	Process
GO:0071922	regulation of cohesin loading	-	ISO	Process