EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041438 (Gene tree)
Gene ID: 21771
Gene Symbol: Utp4
Alias: Cirh1a|TEG-292|Tex292
Full Name: UTP4 small subunit processome component
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 29453
Position: chr8: 106893636-106923088
Accession: 1096573
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000212718	-	3113	-	-	- (aa)	-	-
ENSMUST00000047629	-	2232	XM_006530842	ENSMUSP00000048377	686 (aa)	XP_006530905	Q8R2N2
ENSMUST00000212272	-	373	-	ENSMUSP00000148429	11 (aa)	-	A0A1D5RLM4

Gene Model

Click here to download ENSMUSG00000041438's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041438's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041438	Utp4	100	89.942	ENSG00000141076	UTP4	100	97.436	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0001650	fibrillar center	-	ISO	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005694	chromosome	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	ISO	Process
GO:0006364	rRNA processing	-	IEA	Process
GO:0030490	maturation of SSU-rRNA	-	ISO	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034455	t-UTP complex	21873635.	IBA	Component
GO:0034455	t-UTP complex	-	ISO	Component
GO:0042254	ribosome biogenesis	-	IEA	Process