EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041506 (Gene tree)
Gene ID: 27966
Gene Symbol: Rrp9
Alias: 55kDa|D9Wsu10e|Rnu3ip2|U3-55k
Full Name: RRP9%2C small subunit (SSU) processome component%2C homolog (yeast)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 9462
Position: chr9: 106475963-106485424
Accession: 2384313
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123464	-	449	-	-	- (aa)	-	-
ENSMUST00000156796	-	411	-	-	- (aa)	-	-
ENSMUST00000125630	-	1611	-	-	- (aa)	-	-
ENSMUST00000185336	-	482	-	ENSMUSP00000140949	67 (aa)	-	A0A087WS95
ENSMUST00000217303	-	725	-	-	- (aa)	-	-
ENSMUST00000131618	-	860	-	-	- (aa)	-	-
ENSMUST00000047721	-	1586	-	ENSMUSP00000038580	475 (aa)	-	Q91WM3
ENSMUST00000127400	-	424	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000041506's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041506's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041506	Rrp9	96	41.970	FBgn0053505	U3-55K	80	44.557	Drosophila_melanogaster
ENSMUSG00000041506	Rrp9	100	92.632	ENSG00000114767	RRP9	100	92.632	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0031428	box C/D snoRNP complex	-	ISO	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034511	U3 snoRNA binding	-	ISO	Function