EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041560 (Gene tree)
Gene ID: 68077
Gene Symbol: Nop53
Alias: 9430097C02Rik|Gltscr2
Full Name: NOP53 ribosome biogenesis factor
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 9892 bases
Position: chr7:15936183-15946074
Accession: 2154441
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000043981	Nop53	PF07767.11	8.7e-102	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000198688	-	1455	-	-	- (aa)	-	-
ENSMUST00000044158	-	3176	-	ENSMUSP00000043981	484 (aa)	-	Q8BK35
ENSMUST00000197477	-	1793	-	-	- (aa)	-	-
ENSMUST00000200455	-	444	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000041560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041560's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041560	Nop53	100	80.992	ENSG00000105373	NOP53	99	93.827	Homo_sapiens
ENSMUSG00000041560	Nop53	88	46.172	ENSAPOG00000006446	nop53	97	45.376	Acanthochromis_polyacanthus
ENSMUSG00000041560	Nop53	99	74.900	ENSAMEG00000015214	NOP53	100	74.900	Ailuropoda_melanoleuca
ENSMUSG00000041560	Nop53	74	45.304	ENSACIG00000002467	nop53	98	45.304	Amphilophus_citrinellus
ENSMUSG00000041560	Nop53	88	46.744	ENSAOCG00000007002	nop53	97	45.690	Amphiprion_ocellaris
ENSMUSG00000041560	Nop53	88	46.868	ENSAPEG00000024564	nop53	97	45.806	Amphiprion_percula
ENSMUSG00000041560	Nop53	92	46.137	ENSATEG00000021860	nop53	97	46.578	Anabas_testudineus
ENSMUSG00000041560	Nop53	61	56.000	ENSACAG00000011362	-	100	56.000	Anolis_carolinensis
ENSMUSG00000041560	Nop53	96	73.333	ENSANAG00000007933	NOP53	100	73.333	Aotus_nancymaae
ENSMUSG00000041560	Nop53	88	47.196	ENSACLG00000011832	nop53	97	46.186	Astatotilapia_calliptera
ENSMUSG00000041560	Nop53	88	48.244	ENSAMXG00000014883	nop53	89	48.712	Astyanax_mexicanus
ENSMUSG00000041560	Nop53	100	78.926	ENSBTAG00000021192	NOP53	91	78.926	Bos_taurus
ENSMUSG00000041560	Nop53	100	80.579	ENSCJAG00000011385	NOP53	100	80.658	Callithrix_jacchus
ENSMUSG00000041560	Nop53	97	80.922	ENSCAFG00000004080	NOP53	100	80.000	Canis_familiaris
ENSMUSG00000041560	Nop53	99	79.503	ENSCHIG00000009393	NOP53	100	79.503	Capra_hircus
ENSMUSG00000041560	Nop53	98	71.822	ENSTSYG00000036631	NOP53	99	71.250	Carlito_syrichta
ENSMUSG00000041560	Nop53	83	80.846	ENSCAPG00000013148	NOP53	100	80.846	Cavia_aperea
ENSMUSG00000041560	Nop53	98	81.513	ENSCPOG00000015665	NOP53	99	81.513	Cavia_porcellus
ENSMUSG00000041560	Nop53	100	81.612	ENSCCAG00000025477	NOP53	100	82.025	Cebus_capucinus
ENSMUSG00000041560	Nop53	100	81.405	ENSCATG00000032842	NOP53	100	81.405	Cercocebus_atys
ENSMUSG00000041560	Nop53	100	78.645	ENSCLAG00000001860	NOP53	100	78.645	Chinchilla_lanigera
ENSMUSG00000041560	Nop53	100	81.198	ENSCSAG00000002928	NOP53	100	81.612	Chlorocebus_sabaeus
ENSMUSG00000041560	Nop53	85	59.420	ENSCPBG00000009047	NOP53	95	60.000	Chrysemys_picta_bellii
ENSMUSG00000041560	Nop53	88	31.377	ENSCING00000021395	-	96	32.506	Ciona_intestinalis
ENSMUSG00000041560	Nop53	88	33.409	ENSCSAVG00000006009	-	95	33.557	Ciona_savignyi
ENSMUSG00000041560	Nop53	100	75.000	ENSCANG00000039648	NOP53	100	75.413	Colobus_angolensis_palliatus
ENSMUSG00000041560	Nop53	100	86.777	ENSCGRG00001019033	Nop53	100	86.777	Cricetulus_griseus_chok1gshd
ENSMUSG00000041560	Nop53	88	43.379	ENSCSEG00000014834	nop53	89	43.891	Cynoglossus_semilaevis
ENSMUSG00000041560	Nop53	88	47.696	ENSCVAG00000005940	nop53	97	46.737	Cyprinodon_variegatus
ENSMUSG00000041560	Nop53	88	51.860	ENSDARG00000100452	nop53	100	51.813	Danio_rerio
ENSMUSG00000041560	Nop53	97	81.489	ENSDNOG00000005165	NOP53	91	80.785	Dasypus_novemcinctus
ENSMUSG00000041560	Nop53	60	81.379	ENSDORG00000016339	-	100	81.379	Dipodomys_ordii
ENSMUSG00000041560	Nop53	95	42.516	ENSEBUG00000012747	nop53	91	44.292	Eptatretus_burgeri
ENSMUSG00000041560	Nop53	100	79.339	ENSEASG00005004345	NOP53	96	79.752	Equus_asinus_asinus
ENSMUSG00000041560	Nop53	100	78.937	ENSECAG00000026850	NOP53	96	79.346	Equus_caballus
ENSMUSG00000041560	Nop53	100	69.008	ENSEEUG00000005287	NOP53	87	93.939	Erinaceus_europaeus
ENSMUSG00000041560	Nop53	88	50.926	ENSELUG00000001525	nop53	89	51.157	Esox_lucius
ENSMUSG00000041560	Nop53	100	79.794	ENSFCAG00000010861	NOP53	100	80.041	Felis_catus
ENSMUSG00000041560	Nop53	99	67.146	ENSFDAG00000010478	NOP53	100	67.216	Fukomys_damarensis
ENSMUSG00000041560	Nop53	88	48.380	ENSFHEG00000017763	nop53	98	46.122	Fundulus_heteroclitus
ENSMUSG00000041560	Nop53	88	44.706	ENSGMOG00000014299	nop53	88	44.706	Gadus_morhua
ENSMUSG00000041560	Nop53	96	53.165	ENSGALG00000039473	NOP53	77	53.586	Gallus_gallus
ENSMUSG00000041560	Nop53	95	44.255	ENSGAFG00000013301	nop53	95	45.053	Gambusia_affinis
ENSMUSG00000041560	Nop53	88	48.260	ENSGACG00000005766	nop53	96	47.134	Gasterosteus_aculeatus
ENSMUSG00000041560	Nop53	98	71.339	ENSGGOG00000024728	-	100	72.336	Gorilla_gorilla
ENSMUSG00000041560	Nop53	99	78.054	ENSGGOG00000005462	NOP53	100	78.468	Gorilla_gorilla
ENSMUSG00000041560	Nop53	88	47.454	ENSHBUG00000023625	nop53	97	46.581	Haplochromis_burtoni
ENSMUSG00000041560	Nop53	99	79.012	ENSHGLG00000018240	NOP53	100	79.339	Heterocephalus_glaber_female
ENSMUSG00000041560	Nop53	79	88.189	ENSHGLG00100015613	NOP53	100	88.189	Heterocephalus_glaber_male
ENSMUSG00000041560	Nop53	88	44.444	ENSHCOG00000017133	nop53	97	43.312	Hippocampus_comes
ENSMUSG00000041560	Nop53	88	52.706	ENSIPUG00000008154	nop53	78	52.706	Ictalurus_punctatus
ENSMUSG00000041560	Nop53	100	83.678	ENSSTOG00000022092	NOP53	100	83.678	Ictidomys_tridecemlineatus
ENSMUSG00000041560	Nop53	98	83.510	ENSJJAG00000007854	Nop53	100	83.230	Jaculus_jaculus
ENSMUSG00000041560	Nop53	84	45.477	ENSKMAG00000020756	nop53	97	44.592	Kryptolebias_marmoratus
ENSMUSG00000041560	Nop53	88	46.744	ENSLBEG00000011432	nop53	97	45.745	Labrus_bergylta
ENSMUSG00000041560	Nop53	85	51.084	ENSLACG00000018320	NOP53	100	51.084	Latimeria_chalumnae
ENSMUSG00000041560	Nop53	88	50.939	ENSLOCG00000014178	nop53	88	51.756	Lepisosteus_oculatus
ENSMUSG00000041560	Nop53	100	81.405	ENSMFAG00000045103	NOP53	100	81.818	Macaca_fascicularis
ENSMUSG00000041560	Nop53	100	81.405	ENSMMUG00000013348	NOP53	99	93.827	Macaca_mulatta
ENSMUSG00000041560	Nop53	100	81.198	ENSMNEG00000042540	NOP53	96	81.612	Macaca_nemestrina
ENSMUSG00000041560	Nop53	99	70.722	ENSMLEG00000032475	NOP53	100	70.722	Mandrillus_leucophaeus
ENSMUSG00000041560	Nop53	88	47.332	ENSMAMG00000012652	nop53	97	46.921	Mastacembelus_armatus
ENSMUSG00000041560	Nop53	88	45.647	ENSMZEG00005005033	nop53	96	44.731	Maylandia_zebra
ENSMUSG00000041560	Nop53	100	85.331	ENSMAUG00000012617	Nop53	100	85.331	Mesocricetus_auratus
ENSMUSG00000041560	Nop53	91	78.604	ENSMICG00000005580	NOP53	95	78.409	Microcebus_murinus
ENSMUSG00000041560	Nop53	99	89.234	ENSMOCG00000008367	Nop53	100	89.234	Microtus_ochrogaster
ENSMUSG00000041560	Nop53	88	46.370	ENSMMOG00000006515	nop53	96	45.824	Mola_mola
ENSMUSG00000041560	Nop53	99	68.125	ENSMODG00000008721	NOP53	92	68.125	Monodelphis_domestica
ENSMUSG00000041560	Nop53	95	46.695	ENSMALG00000020350	nop53	92	46.695	Monopterus_albus
ENSMUSG00000041560	Nop53	100	99.380	MGP_CAROLIEiJ_G0029218	Nop53	100	99.468	Mus_caroli
ENSMUSG00000041560	Nop53	85	96.117	MGP_PahariEiJ_G0021074	-	100	96.809	Mus_pahari
ENSMUSG00000041560	Nop53	100	98.760	MGP_SPRETEiJ_G0030298	Nop53	100	98.936	Mus_spretus
ENSMUSG00000041560	Nop53	100	79.424	ENSMPUG00000004456	NOP53	100	79.424	Mustela_putorius_furo
ENSMUSG00000041560	Nop53	54	92.126	ENSMLUG00000027066	-	100	80.597	Myotis_lucifugus
ENSMUSG00000041560	Nop53	100	86.008	ENSNGAG00000019894	Nop53	100	86.008	Nannospalax_galili
ENSMUSG00000041560	Nop53	87	41.882	ENSNBRG00000002057	nop53	93	41.290	Neolamprologus_brichardi
ENSMUSG00000041560	Nop53	100	80.082	ENSNLEG00000003143	NOP53	100	81.612	Nomascus_leucogenys
ENSMUSG00000041560	Nop53	93	60.754	ENSNLEG00000028326	-	99	61.197	Nomascus_leucogenys
ENSMUSG00000041560	Nop53	77	59.140	ENSMEUG00000002525	-	100	59.140	Notamacropus_eugenii
ENSMUSG00000041560	Nop53	99	79.089	ENSODEG00000006707	NOP53	100	79.752	Octodon_degus
ENSMUSG00000041560	Nop53	88	47.454	ENSONIG00000016624	nop53	97	46.639	Oreochromis_niloticus
ENSMUSG00000041560	Nop53	88	46.934	ENSORLG00000008659	nop53	96	46.022	Oryzias_latipes
ENSMUSG00000041560	Nop53	88	43.868	ENSORLG00020019916	nop53	93	43.226	Oryzias_latipes_hni
ENSMUSG00000041560	Nop53	88	47.209	ENSORLG00015001315	nop53	97	47.346	Oryzias_latipes_hsok
ENSMUSG00000041560	Nop53	95	46.482	ENSOMEG00000018244	nop53	98	46.764	Oryzias_melastigma
ENSMUSG00000041560	Nop53	99	61.034	ENSOARG00000011414	NOP53	100	60.558	Ovis_aries
ENSMUSG00000041560	Nop53	99	70.492	ENSPPAG00000029337	-	100	70.492	Pan_paniscus
ENSMUSG00000041560	Nop53	100	79.752	ENSPPAG00000002927	-	100	80.165	Pan_paniscus
ENSMUSG00000041560	Nop53	99	68.530	ENSPPAG00000032995	-	100	67.288	Pan_paniscus
ENSMUSG00000041560	Nop53	100	79.175	ENSPPRG00000008954	NOP53	100	79.424	Panthera_pardus
ENSMUSG00000041560	Nop53	100	81.818	ENSPTRG00000011215	NOP53	100	82.231	Pan_troglodytes
ENSMUSG00000041560	Nop53	99	70.697	ENSPTRG00000052493	-	100	70.697	Pan_troglodytes
ENSMUSG00000041560	Nop53	99	77.019	ENSPTRG00000043520	-	100	77.433	Pan_troglodytes
ENSMUSG00000041560	Nop53	100	81.405	ENSPANG00000002964	NOP53	100	81.818	Papio_anubis
ENSMUSG00000041560	Nop53	88	51.054	ENSPKIG00000000127	nop53	88	50.588	Paramormyrops_kingsleyae
ENSMUSG00000041560	Nop53	88	47.294	ENSPMGG00000021579	nop53	96	46.452	Periophthalmus_magnuspinnatus
ENSMUSG00000041560	Nop53	100	90.909	ENSPEMG00000006856	Nop53	100	90.909	Peromyscus_maniculatus_bairdii
ENSMUSG00000041560	Nop53	99	64.330	ENSPCIG00000016718	NOP53	100	65.567	Phascolarctos_cinereus
ENSMUSG00000041560	Nop53	88	48.037	ENSPFOG00000002839	nop53	89	48.037	Poecilia_formosa
ENSMUSG00000041560	Nop53	88	48.037	ENSPLAG00000006675	nop53	89	48.037	Poecilia_latipinna
ENSMUSG00000041560	Nop53	88	47.806	ENSPMEG00000009589	nop53	98	46.170	Poecilia_mexicana
ENSMUSG00000041560	Nop53	88	44.056	ENSPREG00000008711	nop53	96	42.766	Poecilia_reticulata
ENSMUSG00000041560	Nop53	100	74.333	ENSPPYG00000010181	NOP53	100	75.207	Pongo_abelii
ENSMUSG00000041560	Nop53	98	76.299	ENSPCAG00000007692	NOP53	100	76.299	Procavia_capensis
ENSMUSG00000041560	Nop53	89	82.353	ENSPCOG00000016124	NOP53	100	68.388	Propithecus_coquereli
ENSMUSG00000041560	Nop53	84	78.491	ENSPVAG00000014671	NOP53	84	78.571	Pteropus_vampyrus
ENSMUSG00000041560	Nop53	88	47.430	ENSPNYG00000001341	nop53	97	46.398	Pundamilia_nyererei
ENSMUSG00000041560	Nop53	88	50.824	ENSPNAG00000012520	nop53	89	52.000	Pygocentrus_nattereri
ENSMUSG00000041560	Nop53	100	93.182	ENSRNOG00000013023	Nop53	100	93.182	Rattus_norvegicus
ENSMUSG00000041560	Nop53	100	80.992	ENSRBIG00000036427	NOP53	100	81.405	Rhinopithecus_bieti
ENSMUSG00000041560	Nop53	100	81.198	ENSRROG00000042298	NOP53	100	81.612	Rhinopithecus_roxellana
ENSMUSG00000041560	Nop53	96	81.370	ENSSBOG00000033115	NOP53	100	80.247	Saimiri_boliviensis_boliviensis
ENSMUSG00000041560	Nop53	85	68.049	ENSSHAG00000002239	NOP53	100	67.312	Sarcophilus_harrisii
ENSMUSG00000041560	Nop53	88	52.347	ENSSFOG00015007062	gltscr2	96	50.215	Scleropages_formosus
ENSMUSG00000041560	Nop53	88	48.028	ENSSMAG00000000212	nop53	89	48.028	Scophthalmus_maximus
ENSMUSG00000041560	Nop53	88	47.552	ENSSDUG00000010575	nop53	97	47.548	Seriola_dumerili
ENSMUSG00000041560	Nop53	88	47.073	ENSSLDG00000000140	nop53	94	46.895	Seriola_lalandi_dorsalis
ENSMUSG00000041560	Nop53	82	82.000	ENSSARG00000014109	NOP53	83	82.000	Sorex_araneus
ENSMUSG00000041560	Nop53	97	47.780	ENSSPUG00000004420	NOP53	98	47.660	Sphenodon_punctatus
ENSMUSG00000041560	Nop53	88	46.296	ENSSPAG00000000318	nop53	97	45.666	Stegastes_partitus
ENSMUSG00000041560	Nop53	98	78.178	ENSSSCG00000022774	NOP53	100	77.433	Sus_scrofa
ENSMUSG00000041560	Nop53	88	46.207	ENSTRUG00000004944	nop53	97	45.148	Takifugu_rubripes
ENSMUSG00000041560	Nop53	79	89.764	ENSTBEG00000008708	NOP53	80	89.764	Tupaia_belangeri
ENSMUSG00000041560	Nop53	100	78.439	ENSTTRG00000011831	NOP53	100	78.439	Tursiops_truncatus
ENSMUSG00000041560	Nop53	99	77.160	ENSUAMG00000028254	NOP53	100	75.309	Ursus_americanus
ENSMUSG00000041560	Nop53	78	77.953	ENSVVUG00000023365	NOP53	77	76.607	Vulpes_vulpes
ENSMUSG00000041560	Nop53	93	66.372	ENSXETG00000002782	nop53	99	49.789	Xenopus_tropicalis
ENSMUSG00000041560	Nop53	88	48.951	ENSXCOG00000004436	nop53	98	47.292	Xiphophorus_couchianus
ENSMUSG00000041560	Nop53	88	48.513	ENSXMAG00000002589	nop53	98	46.926	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	21873635.	IBA	Process
GO:0000027	ribosomal large subunit assembly	-	ISO	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001650	fibrillar center	-	ISO	Component
GO:0001932	regulation of protein phosphorylation	-	ISO	Process
GO:0002039	p53 binding	-	ISO	Function
GO:0005515	protein binding	21804542.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	21804542.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006281	DNA repair	-	ISO	Process
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0007095	mitotic G2 DNA damage checkpoint	-	ISO	Process
GO:0008097	5S rRNA binding	21873635.	IBA	Function
GO:0008097	5S rRNA binding	-	ISO	Function
GO:0014067	negative regulation of phosphatidylinositol 3-kinase signaling	-	ISO	Process
GO:0031333	negative regulation of protein complex assembly	-	ISO	Process
GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	21804542.	IMP	Process
GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0033553	rDNA heterochromatin	-	ISO	Component
GO:0039535	regulation of RIG-I signaling pathway	-	ISO	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042981	regulation of apoptotic process	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0050821	protein stabilization	-	ISO	Process
GO:0051726	regulation of cell cycle	-	ISO	Process
GO:0051898	negative regulation of protein kinase B signaling	-	ISO	Process
GO:0071456	cellular response to hypoxia	-	ISO	Process
GO:1901796	regulation of signal transduction by p53 class mediator	-	ISO	Process
GO:1901797	negative regulation of signal transduction by p53 class mediator	21804542.	IMP	Process
GO:1901837	negative regulation of transcription of nucleolar large rRNA by RNA polymerase I	-	ISO	Process
GO:1902570	protein localization to nucleolus	21804542.	IMP	Process
GO:1903006	positive regulation of protein K63-linked deubiquitination	-	ISO	Process
GO:1903715	regulation of aerobic respiration	-	ISO	Process
GO:1990173	protein localization to nucleoplasm	-	ISO	Process