EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041781 (Gene tree)
Gene ID: 51786
Gene Symbol: Cpsf2
Alias: 100kDa|2610024B04Rik|Cpsf
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 30437 bases
Position: chr12:101975988-102006424
Accession: 1861601
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000047797	Beta-Casp	PF10996.8	2e-20	1	1
ENSMUSP00000047797	Lactamase_B	PF00753.27	2.6e-05	1	1
ENSMUSP00000047797	RMMBL	PF07521.12	2.7e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000047357	-	5732	XM_006516071	ENSMUSP00000047797	782 (aa)	XP_006516134	O35218

Gene Model

Click here to download ENSMUSG00000041781's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041781's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041781	Cpsf2	100	97.954	ENSG00000165934	CPSF2	100	97.954	Homo_sapiens
ENSMUSG00000041781	Cpsf2	100	85.551	ENSAPOG00000001242	cpsf2	100	85.551	Acanthochromis_polyacanthus
ENSMUSG00000041781	Cpsf2	100	85.823	ENSACIG00000009331	cpsf2	100	85.823	Amphilophus_citrinellus
ENSMUSG00000041781	Cpsf2	100	85.678	ENSAOCG00000014095	cpsf2	100	85.678	Amphiprion_ocellaris
ENSMUSG00000041781	Cpsf2	100	85.678	ENSAPEG00000009158	cpsf2	100	85.678	Amphiprion_percula
ENSMUSG00000041781	Cpsf2	96	85.921	ENSATEG00000017644	cpsf2	100	84.307	Anabas_testudineus
ENSMUSG00000041781	Cpsf2	100	95.287	ENSAPLG00000006330	CPSF2	100	95.287	Anas_platyrhynchos
ENSMUSG00000041781	Cpsf2	100	94.508	ENSACAG00000009245	CPSF2	100	94.508	Anolis_carolinensis
ENSMUSG00000041781	Cpsf2	100	97.954	ENSANAG00000022915	CPSF2	100	97.954	Aotus_nancymaae
ENSMUSG00000041781	Cpsf2	100	85.388	ENSAMXG00000018696	cpsf2	100	85.388	Astyanax_mexicanus
ENSMUSG00000041781	Cpsf2	100	98.210	ENSBTAG00000010227	CPSF2	100	98.210	Bos_taurus
ENSMUSG00000041781	Cpsf2	100	41.754	WBGene00017313	cpsf-2	100	41.440	Caenorhabditis_elegans
ENSMUSG00000041781	Cpsf2	100	97.954	ENSCJAG00000018069	CPSF2	100	97.954	Callithrix_jacchus
ENSMUSG00000041781	Cpsf2	100	98.082	ENSCAFG00000010909	CPSF2	100	98.082	Canis_familiaris
ENSMUSG00000041781	Cpsf2	100	98.082	ENSCAFG00020020670	CPSF2	100	98.082	Canis_lupus_dingo
ENSMUSG00000041781	Cpsf2	100	98.210	ENSCHIG00000023848	CPSF2	100	98.210	Capra_hircus
ENSMUSG00000041781	Cpsf2	100	97.698	ENSTSYG00000009036	CPSF2	100	97.698	Carlito_syrichta
ENSMUSG00000041781	Cpsf2	100	98.210	ENSCPOG00000010899	CPSF2	100	98.210	Cavia_porcellus
ENSMUSG00000041781	Cpsf2	100	97.954	ENSCCAG00000028088	CPSF2	100	97.954	Cebus_capucinus
ENSMUSG00000041781	Cpsf2	100	98.082	ENSCATG00000030132	CPSF2	100	98.082	Cercocebus_atys
ENSMUSG00000041781	Cpsf2	100	98.082	ENSCLAG00000012404	CPSF2	100	98.082	Chinchilla_lanigera
ENSMUSG00000041781	Cpsf2	100	98.082	ENSCSAG00000011300	CPSF2	100	98.082	Chlorocebus_sabaeus
ENSMUSG00000041781	Cpsf2	100	91.816	ENSCHOG00000012904	CPSF2	100	91.816	Choloepus_hoffmanni
ENSMUSG00000041781	Cpsf2	100	95.402	ENSCPBG00000008766	CPSF2	97	95.402	Chrysemys_picta_bellii
ENSMUSG00000041781	Cpsf2	100	54.795	ENSCING00000007881	-	100	54.670	Ciona_intestinalis
ENSMUSG00000041781	Cpsf2	94	98.087	ENSCANG00000041651	CPSF2	100	98.087	Colobus_angolensis_palliatus
ENSMUSG00000041781	Cpsf2	100	98.721	ENSCGRG00001006901	Cpsf2	100	98.721	Cricetulus_griseus_chok1gshd
ENSMUSG00000041781	Cpsf2	100	98.721	ENSCGRG00000012416	Cpsf2	100	98.721	Cricetulus_griseus_crigri
ENSMUSG00000041781	Cpsf2	100	83.523	ENSCSEG00000004116	cpsf2	100	83.523	Cynoglossus_semilaevis
ENSMUSG00000041781	Cpsf2	100	85.044	ENSCVAG00000000095	cpsf2	100	85.171	Cyprinodon_variegatus
ENSMUSG00000041781	Cpsf2	100	85.570	ENSDARG00000028971	cpsf2	100	85.570	Danio_rerio
ENSMUSG00000041781	Cpsf2	100	98.082	ENSDNOG00000042757	CPSF2	100	98.082	Dasypus_novemcinctus
ENSMUSG00000041781	Cpsf2	100	98.210	ENSDORG00000013709	Cpsf2	100	98.210	Dipodomys_ordii
ENSMUSG00000041781	Cpsf2	100	53.300	FBgn0027873	Cpsf100	100	53.059	Drosophila_melanogaster
ENSMUSG00000041781	Cpsf2	100	89.272	ENSETEG00000012123	CPSF2	100	89.272	Echinops_telfairi
ENSMUSG00000041781	Cpsf2	52	75.980	ENSEBUG00000012098	cpsf2	93	75.980	Eptatretus_burgeri
ENSMUSG00000041781	Cpsf2	89	97.250	ENSEASG00005021193	CPSF2	100	97.250	Equus_asinus_asinus
ENSMUSG00000041781	Cpsf2	100	98.082	ENSECAG00000023935	CPSF2	100	98.082	Equus_caballus
ENSMUSG00000041781	Cpsf2	100	83.814	ENSELUG00000008442	cpsf2	100	83.814	Esox_lucius
ENSMUSG00000041781	Cpsf2	100	98.210	ENSFCAG00000007886	CPSF2	100	98.210	Felis_catus
ENSMUSG00000041781	Cpsf2	100	95.530	ENSFALG00000002412	CPSF2	100	95.530	Ficedula_albicollis
ENSMUSG00000041781	Cpsf2	100	98.082	ENSFDAG00000006327	CPSF2	100	98.082	Fukomys_damarensis
ENSMUSG00000041781	Cpsf2	96	84.314	ENSFHEG00000015465	cpsf2	98	84.575	Fundulus_heteroclitus
ENSMUSG00000041781	Cpsf2	100	83.207	ENSGMOG00000008761	cpsf2	100	83.207	Gadus_morhua
ENSMUSG00000041781	Cpsf2	100	94.764	ENSGALG00000010783	CPSF2	100	95.275	Gallus_gallus
ENSMUSG00000041781	Cpsf2	100	85.298	ENSGAFG00000001407	cpsf2	100	85.298	Gambusia_affinis
ENSMUSG00000041781	Cpsf2	100	84.157	ENSGACG00000008418	cpsf2	100	84.157	Gasterosteus_aculeatus
ENSMUSG00000041781	Cpsf2	100	95.530	ENSGAGG00000008287	CPSF2	100	95.530	Gopherus_agassizii
ENSMUSG00000041781	Cpsf2	100	97.954	ENSGGOG00000011799	CPSF2	100	97.954	Gorilla_gorilla
ENSMUSG00000041781	Cpsf2	100	84.918	ENSHBUG00000023466	cpsf2	100	84.918	Haplochromis_burtoni
ENSMUSG00000041781	Cpsf2	100	97.954	ENSHGLG00000018311	CPSF2	100	97.954	Heterocephalus_glaber_female
ENSMUSG00000041781	Cpsf2	100	97.954	ENSHGLG00100016460	CPSF2	100	97.954	Heterocephalus_glaber_male
ENSMUSG00000041781	Cpsf2	100	84.664	ENSHCOG00000019527	cpsf2	98	84.664	Hippocampus_comes
ENSMUSG00000041781	Cpsf2	100	85.133	ENSIPUG00000020857	cpsf2	100	85.133	Ictalurus_punctatus
ENSMUSG00000041781	Cpsf2	100	98.082	ENSSTOG00000009528	CPSF2	100	98.082	Ictidomys_tridecemlineatus
ENSMUSG00000041781	Cpsf2	100	98.210	ENSJJAG00000017925	Cpsf2	100	98.210	Jaculus_jaculus
ENSMUSG00000041781	Cpsf2	100	84.411	ENSKMAG00000019429	cpsf2	100	84.411	Kryptolebias_marmoratus
ENSMUSG00000041781	Cpsf2	95	83.668	ENSLBEG00000011585	cpsf2	100	83.824	Labrus_bergylta
ENSMUSG00000041781	Cpsf2	100	89.272	ENSLACG00000019024	CPSF2	100	89.527	Latimeria_chalumnae
ENSMUSG00000041781	Cpsf2	100	86.946	ENSLOCG00000014102	cpsf2	100	86.946	Lepisosteus_oculatus
ENSMUSG00000041781	Cpsf2	100	97.704	ENSLAFG00000004891	CPSF2	100	97.704	Loxodonta_africana
ENSMUSG00000041781	Cpsf2	100	98.082	ENSMFAG00000041212	CPSF2	100	98.082	Macaca_fascicularis
ENSMUSG00000041781	Cpsf2	100	98.082	ENSMMUG00000000699	CPSF2	100	98.082	Macaca_mulatta
ENSMUSG00000041781	Cpsf2	100	98.082	ENSMNEG00000031584	CPSF2	100	98.082	Macaca_nemestrina
ENSMUSG00000041781	Cpsf2	100	98.082	ENSMLEG00000029394	CPSF2	100	98.082	Mandrillus_leucophaeus
ENSMUSG00000041781	Cpsf2	100	85.425	ENSMAMG00000004235	cpsf2	100	85.425	Mastacembelus_armatus
ENSMUSG00000041781	Cpsf2	100	85.044	ENSMZEG00005001769	cpsf2	100	85.044	Maylandia_zebra
ENSMUSG00000041781	Cpsf2	100	94.770	ENSMGAG00000013122	CPSF2	100	95.281	Meleagris_gallopavo
ENSMUSG00000041781	Cpsf2	100	98.593	ENSMAUG00000015160	Cpsf2	100	98.593	Mesocricetus_auratus
ENSMUSG00000041781	Cpsf2	100	98.210	ENSMICG00000016441	CPSF2	100	98.210	Microcebus_murinus
ENSMUSG00000041781	Cpsf2	100	98.977	ENSMOCG00000015372	Cpsf2	100	98.977	Microtus_ochrogaster
ENSMUSG00000041781	Cpsf2	100	80.608	ENSMMOG00000015590	cpsf2	100	80.608	Mola_mola
ENSMUSG00000041781	Cpsf2	100	97.570	ENSMODG00000002042	CPSF2	100	97.570	Monodelphis_domestica
ENSMUSG00000041781	Cpsf2	100	82.510	ENSMALG00000022275	cpsf2	100	82.510	Monopterus_albus
ENSMUSG00000041781	Cpsf2	100	99.488	MGP_PahariEiJ_G0029791	Cpsf2	100	99.488	Mus_pahari
ENSMUSG00000041781	Cpsf2	100	100.000	MGP_SPRETEiJ_G0018877	Cpsf2	100	100.000	Mus_spretus
ENSMUSG00000041781	Cpsf2	100	98.082	ENSMPUG00000007617	CPSF2	98	98.082	Mustela_putorius_furo
ENSMUSG00000041781	Cpsf2	100	97.826	ENSMLUG00000005570	CPSF2	100	97.826	Myotis_lucifugus
ENSMUSG00000041781	Cpsf2	100	98.721	ENSNGAG00000020312	Cpsf2	100	98.721	Nannospalax_galili
ENSMUSG00000041781	Cpsf2	100	85.425	ENSNBRG00000022402	cpsf2	100	85.425	Neolamprologus_brichardi
ENSMUSG00000041781	Cpsf2	100	97.315	ENSNLEG00000017132	CPSF2	100	97.315	Nomascus_leucogenys
ENSMUSG00000041781	Cpsf2	91	99.029	ENSMEUG00000008138	CPSF2	91	99.029	Notamacropus_eugenii
ENSMUSG00000041781	Cpsf2	94	90.984	ENSOPRG00000008484	-	100	90.984	Ochotona_princeps
ENSMUSG00000041781	Cpsf2	100	98.210	ENSODEG00000008682	CPSF2	100	98.210	Octodon_degus
ENSMUSG00000041781	Cpsf2	100	85.678	ENSONIG00000005901	cpsf2	100	85.678	Oreochromis_niloticus
ENSMUSG00000041781	Cpsf2	100	97.187	ENSOANG00000003822	CPSF2	100	97.187	Ornithorhynchus_anatinus
ENSMUSG00000041781	Cpsf2	100	98.082	ENSOCUG00000005713	CPSF2	100	98.082	Oryctolagus_cuniculus
ENSMUSG00000041781	Cpsf2	100	79.721	ENSORLG00000011628	cpsf2	100	79.721	Oryzias_latipes
ENSMUSG00000041781	Cpsf2	100	84.411	ENSORLG00020016980	cpsf2	100	84.411	Oryzias_latipes_hni
ENSMUSG00000041781	Cpsf2	100	84.411	ENSORLG00015011910	cpsf2	100	84.411	Oryzias_latipes_hsok
ENSMUSG00000041781	Cpsf2	100	83.904	ENSOMEG00000022876	cpsf2	100	83.904	Oryzias_melastigma
ENSMUSG00000041781	Cpsf2	100	95.153	ENSOARG00000012889	CPSF2	100	95.153	Ovis_aries
ENSMUSG00000041781	Cpsf2	100	97.954	ENSPPAG00000039666	CPSF2	100	97.954	Pan_paniscus
ENSMUSG00000041781	Cpsf2	99	98.207	ENSPPRG00000010869	CPSF2	100	98.207	Panthera_pardus
ENSMUSG00000041781	Cpsf2	100	98.210	ENSPTIG00000021202	CPSF2	100	98.210	Panthera_tigris_altaica
ENSMUSG00000041781	Cpsf2	100	97.954	ENSPTRG00000006651	CPSF2	100	97.954	Pan_troglodytes
ENSMUSG00000041781	Cpsf2	100	98.082	ENSPANG00000017417	CPSF2	100	98.082	Papio_anubis
ENSMUSG00000041781	Cpsf2	100	81.703	ENSPKIG00000021453	cpsf2	100	81.703	Paramormyrops_kingsleyae
ENSMUSG00000041781	Cpsf2	100	95.019	ENSPSIG00000006289	CPSF2	100	95.019	Pelodiscus_sinensis
ENSMUSG00000041781	Cpsf2	76	79.568	ENSPMGG00000002511	cpsf2	100	80.066	Periophthalmus_magnuspinnatus
ENSMUSG00000041781	Cpsf2	100	98.977	ENSPEMG00000007917	Cpsf2	100	98.977	Peromyscus_maniculatus_bairdii
ENSMUSG00000041781	Cpsf2	100	74.336	ENSPMAG00000006205	cpsf2	100	74.336	Petromyzon_marinus
ENSMUSG00000041781	Cpsf2	100	97.570	ENSPCIG00000011393	CPSF2	100	97.570	Phascolarctos_cinereus
ENSMUSG00000041781	Cpsf2	100	85.171	ENSPFOG00000018648	cpsf2	100	85.171	Poecilia_formosa
ENSMUSG00000041781	Cpsf2	100	85.171	ENSPLAG00000019199	cpsf2	99	85.171	Poecilia_latipinna
ENSMUSG00000041781	Cpsf2	96	85.526	ENSPMEG00000012100	cpsf2	100	84.893	Poecilia_mexicana
ENSMUSG00000041781	Cpsf2	100	85.298	ENSPREG00000008960	cpsf2	100	85.298	Poecilia_reticulata
ENSMUSG00000041781	Cpsf2	63	97.177	ENSPPYG00000029685	-	100	97.177	Pongo_abelii
ENSMUSG00000041781	Cpsf2	100	97.826	ENSPCAG00000012477	CPSF2	100	97.826	Procavia_capensis
ENSMUSG00000041781	Cpsf2	100	97.954	ENSPCOG00000026387	CPSF2	100	97.954	Propithecus_coquereli
ENSMUSG00000041781	Cpsf2	65	100.000	ENSPVAG00000004223	CPSF2	65	100.000	Pteropus_vampyrus
ENSMUSG00000041781	Cpsf2	100	85.063	ENSPNYG00000023356	cpsf2	100	85.063	Pundamilia_nyererei
ENSMUSG00000041781	Cpsf2	100	86.277	ENSPNAG00000001849	cpsf2	100	86.277	Pygocentrus_nattereri
ENSMUSG00000041781	Cpsf2	100	99.105	ENSRNOG00000005733	Cpsf2	100	99.105	Rattus_norvegicus
ENSMUSG00000041781	Cpsf2	100	98.082	ENSRBIG00000044792	CPSF2	100	98.082	Rhinopithecus_bieti
ENSMUSG00000041781	Cpsf2	100	98.082	ENSRROG00000034875	CPSF2	100	98.082	Rhinopithecus_roxellana
ENSMUSG00000041781	Cpsf2	100	97.954	ENSSBOG00000024571	CPSF2	100	97.954	Saimiri_boliviensis_boliviensis
ENSMUSG00000041781	Cpsf2	100	97.698	ENSSHAG00000010458	CPSF2	100	97.698	Sarcophilus_harrisii
ENSMUSG00000041781	Cpsf2	100	86.785	ENSSFOG00015002117	cpsf2	100	86.785	Scleropages_formosus
ENSMUSG00000041781	Cpsf2	100	83.650	ENSSMAG00000002001	cpsf2	100	83.650	Scophthalmus_maximus
ENSMUSG00000041781	Cpsf2	100	85.805	ENSSDUG00000004084	cpsf2	100	85.805	Seriola_dumerili
ENSMUSG00000041781	Cpsf2	100	85.298	ENSSLDG00000024330	cpsf2	100	85.298	Seriola_lalandi_dorsalis
ENSMUSG00000041781	Cpsf2	58	100.000	ENSSARG00000009784	-	63	100.000	Sorex_araneus
ENSMUSG00000041781	Cpsf2	100	94.764	ENSSPUG00000013485	CPSF2	100	94.764	Sphenodon_punctatus
ENSMUSG00000041781	Cpsf2	100	84.791	ENSSPAG00000013284	cpsf2	100	84.791	Stegastes_partitus
ENSMUSG00000041781	Cpsf2	100	97.954	ENSSSCG00000002447	CPSF2	100	97.954	Sus_scrofa
ENSMUSG00000041781	Cpsf2	100	95.658	ENSTGUG00000012571	-	100	95.658	Taeniopygia_guttata
ENSMUSG00000041781	Cpsf2	100	84.284	ENSTRUG00000003742	cpsf2	100	84.284	Takifugu_rubripes
ENSMUSG00000041781	Cpsf2	100	83.059	ENSTNIG00000012228	cpsf2	100	83.818	Tetraodon_nigroviridis
ENSMUSG00000041781	Cpsf2	91	100.000	ENSTBEG00000004530	CPSF2	94	100.000	Tupaia_belangeri
ENSMUSG00000041781	Cpsf2	88	97.917	ENSTTRG00000008697	CPSF2	88	97.917	Tursiops_truncatus
ENSMUSG00000041781	Cpsf2	100	98.210	ENSUAMG00000028071	CPSF2	100	98.210	Ursus_americanus
ENSMUSG00000041781	Cpsf2	100	98.210	ENSUMAG00000005029	CPSF2	100	98.317	Ursus_maritimus
ENSMUSG00000041781	Cpsf2	99	98.079	ENSVPAG00000003503	CPSF2	100	98.079	Vicugna_pacos
ENSMUSG00000041781	Cpsf2	100	98.082	ENSVVUG00000024642	CPSF2	100	98.082	Vulpes_vulpes
ENSMUSG00000041781	Cpsf2	100	91.188	ENSXETG00000010289	cpsf2	100	91.188	Xenopus_tropicalis
ENSMUSG00000041781	Cpsf2	100	85.425	ENSXCOG00000001764	cpsf2	100	85.425	Xiphophorus_couchianus
ENSMUSG00000041781	Cpsf2	100	85.551	ENSXMAG00000017048	cpsf2	100	85.551	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	16115198.	IDA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISO	Component
GO:0006378	mRNA polyadenylation	-	IEA	Process
GO:0006379	mRNA cleavage	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	-	ISO	Process