EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041815 (Gene tree)
Gene ID: 73826
Gene Symbol: Poldip3
Alias: 1110008P04Rik|PDIP46
Full Name: polymerase (DNA-directed)%2C delta interacting protein 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 23409 bases
Position: chr15:83125976-83149384
Accession: 1921076
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000097944	RRM_1	PF00076.22	6.9e-10	1	1
ENSMUSP00000054548	RRM_1	PF00076.22	7.5e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000135013	-	680	-	-	- (aa)	-	-
ENSMUST00000150926	-	837	-	-	- (aa)	-	-
ENSMUST00000058793	-	3299	-	ENSMUSP00000054548	420 (aa)	-	Q8BG81
ENSMUST00000129372	-	655	-	ENSMUSP00000120859	202 (aa)	-	F6VR84
ENSMUST00000149802	-	2393	-	-	- (aa)	-	-
ENSMUST00000100375	-	3157	XM_006521485	ENSMUSP00000097944	391 (aa)	XP_006521548	Q3UDD3

Gene Model

Click here to download ENSMUSG00000041815's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041815's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041815	Poldip3	100	91.211	ENSG00000100227	POLDIP3	100	91.211	Homo_sapiens
ENSMUSG00000041815	Poldip3	87	44.912	ENSAPOG00000021223	poldip3	97	45.133	Acanthochromis_polyacanthus
ENSMUSG00000041815	Poldip3	100	90.024	ENSAMEG00000009522	POLDIP3	98	90.024	Ailuropoda_melanoleuca
ENSMUSG00000041815	Poldip3	100	47.564	ENSACIG00000023100	poldip3	100	47.344	Amphilophus_citrinellus
ENSMUSG00000041815	Poldip3	100	43.874	ENSAOCG00000004142	poldip3	91	54.144	Amphiprion_ocellaris
ENSMUSG00000041815	Poldip3	100	43.874	ENSAPEG00000013658	poldip3	91	54.144	Amphiprion_percula
ENSMUSG00000041815	Poldip3	86	44.543	ENSATEG00000009633	poldip3	97	44.894	Anabas_testudineus
ENSMUSG00000041815	Poldip3	95	74.876	ENSAPLG00000005154	POLDIP3	100	74.876	Anas_platyrhynchos
ENSMUSG00000041815	Poldip3	100	72.235	ENSACAG00000003515	POLDIP3	98	72.235	Anolis_carolinensis
ENSMUSG00000041815	Poldip3	100	91.211	ENSANAG00000033566	-	100	91.211	Aotus_nancymaae
ENSMUSG00000041815	Poldip3	72	79.538	ENSANAG00000024431	-	96	78.548	Aotus_nancymaae
ENSMUSG00000041815	Poldip3	100	44.643	ENSACLG00000016753	poldip3	86	44.773	Astatotilapia_calliptera
ENSMUSG00000041815	Poldip3	87	45.877	ENSAMXG00000007939	poldip3	99	45.671	Astyanax_mexicanus
ENSMUSG00000041815	Poldip3	100	91.924	ENSBTAG00000016511	POLDIP3	100	91.924	Bos_taurus
ENSMUSG00000041815	Poldip3	100	91.071	ENSCJAG00000009628	POLDIP3	100	91.071	Callithrix_jacchus
ENSMUSG00000041815	Poldip3	100	91.211	ENSCAFG00000000959	POLDIP3	100	91.211	Canis_familiaris
ENSMUSG00000041815	Poldip3	100	86.041	ENSCAFG00020000227	POLDIP3	100	86.041	Canis_lupus_dingo
ENSMUSG00000041815	Poldip3	100	92.162	ENSCHIG00000020171	POLDIP3	100	92.162	Capra_hircus
ENSMUSG00000041815	Poldip3	100	92.637	ENSTSYG00000007189	POLDIP3	100	92.637	Carlito_syrichta
ENSMUSG00000041815	Poldip3	95	85.255	ENSCAPG00000006798	POLDIP3	100	85.255	Cavia_aperea
ENSMUSG00000041815	Poldip3	100	86.730	ENSCPOG00000019524	POLDIP3	100	86.493	Cavia_porcellus
ENSMUSG00000041815	Poldip3	100	76.832	ENSCCAG00000011395	-	100	76.123	Cebus_capucinus
ENSMUSG00000041815	Poldip3	100	90.974	ENSCCAG00000027969	-	100	90.974	Cebus_capucinus
ENSMUSG00000041815	Poldip3	100	91.211	ENSCATG00000029583	POLDIP3	100	91.211	Cercocebus_atys
ENSMUSG00000041815	Poldip3	100	88.836	ENSCLAG00000016864	POLDIP3	100	88.836	Chinchilla_lanigera
ENSMUSG00000041815	Poldip3	100	91.449	ENSCSAG00000005654	POLDIP3	100	91.449	Chlorocebus_sabaeus
ENSMUSG00000041815	Poldip3	100	75.829	ENSCPBG00000021819	POLDIP3	87	75.829	Chrysemys_picta_bellii
ENSMUSG00000041815	Poldip3	100	91.211	ENSCANG00000027664	POLDIP3	100	91.449	Colobus_angolensis_palliatus
ENSMUSG00000041815	Poldip3	100	94.133	ENSCGRG00001004211	-	100	94.133	Cricetulus_griseus_chok1gshd
ENSMUSG00000041815	Poldip3	95	94.355	ENSCGRG00000009374	-	100	94.355	Cricetulus_griseus_crigri
ENSMUSG00000041815	Poldip3	96	44.770	ENSCSEG00000007165	poldip3	100	43.800	Cynoglossus_semilaevis
ENSMUSG00000041815	Poldip3	86	49.708	ENSCVAG00000004370	poldip3	98	43.404	Cyprinodon_variegatus
ENSMUSG00000041815	Poldip3	96	40.945	ENSDARG00000099375	poldip3	98	41.892	Danio_rerio
ENSMUSG00000041815	Poldip3	100	91.211	ENSDNOG00000037211	-	100	91.317	Dasypus_novemcinctus
ENSMUSG00000041815	Poldip3	100	88.863	ENSDORG00000006590	Poldip3	100	89.336	Dipodomys_ordii
ENSMUSG00000041815	Poldip3	100	78.571	ENSETEG00000018022	POLDIP3	100	78.571	Echinops_telfairi
ENSMUSG00000041815	Poldip3	100	39.141	ENSEBUG00000001181	poldip3	93	38.663	Eptatretus_burgeri
ENSMUSG00000041815	Poldip3	100	91.686	ENSEASG00005000795	POLDIP3	100	91.686	Equus_asinus_asinus
ENSMUSG00000041815	Poldip3	100	91.449	ENSECAG00000018350	POLDIP3	100	91.449	Equus_caballus
ENSMUSG00000041815	Poldip3	86	72.376	ENSEEUG00000001290	POLDIP3	100	72.376	Erinaceus_europaeus
ENSMUSG00000041815	Poldip3	100	45.492	ENSELUG00000009005	poldip3	90	44.668	Esox_lucius
ENSMUSG00000041815	Poldip3	100	90.816	ENSFCAG00000032029	POLDIP3	100	90.816	Felis_catus
ENSMUSG00000041815	Poldip3	100	73.872	ENSFALG00000011621	POLDIP3	86	74.347	Ficedula_albicollis
ENSMUSG00000041815	Poldip3	100	86.461	ENSFDAG00000019550	POLDIP3	100	86.461	Fukomys_damarensis
ENSMUSG00000041815	Poldip3	100	50.704	ENSFHEG00000006083	poldip3	100	51.044	Fundulus_heteroclitus
ENSMUSG00000041815	Poldip3	100	49.206	ENSGMOG00000006232	poldip3	100	50.000	Gadus_morhua
ENSMUSG00000041815	Poldip3	100	73.872	ENSGALG00000011863	POLDIP3	100	73.872	Gallus_gallus
ENSMUSG00000041815	Poldip3	100	38.900	ENSGAFG00000017465	poldip3	95	47.395	Gambusia_affinis
ENSMUSG00000041815	Poldip3	100	47.639	ENSGACG00000007224	poldip3	100	47.639	Gasterosteus_aculeatus
ENSMUSG00000041815	Poldip3	100	76.359	ENSGAGG00000014629	POLDIP3	96	76.359	Gopherus_agassizii
ENSMUSG00000041815	Poldip3	100	91.211	ENSGGOG00000014961	POLDIP3	100	91.211	Gorilla_gorilla
ENSMUSG00000041815	Poldip3	100	44.554	ENSHBUG00000021806	poldip3	82	44.773	Haplochromis_burtoni
ENSMUSG00000041815	Poldip3	100	89.549	ENSHGLG00000013156	POLDIP3	100	89.549	Heterocephalus_glaber_female
ENSMUSG00000041815	Poldip3	100	89.549	ENSHGLG00100009086	POLDIP3	100	89.549	Heterocephalus_glaber_male
ENSMUSG00000041815	Poldip3	100	40.882	ENSHCOG00000005823	poldip3	98	43.299	Hippocampus_comes
ENSMUSG00000041815	Poldip3	100	47.826	ENSIPUG00000000564	poldip3	100	46.973	Ictalurus_punctatus
ENSMUSG00000041815	Poldip3	95	92.020	ENSSTOG00000008230	POLDIP3	100	92.020	Ictidomys_tridecemlineatus
ENSMUSG00000041815	Poldip3	100	90.024	ENSJJAG00000018034	Poldip3	100	90.261	Jaculus_jaculus
ENSMUSG00000041815	Poldip3	100	41.379	ENSKMAG00000013839	poldip3	100	41.582	Kryptolebias_marmoratus
ENSMUSG00000041815	Poldip3	100	90.499	ENSLAFG00000014901	POLDIP3	98	90.499	Loxodonta_africana
ENSMUSG00000041815	Poldip3	100	91.211	ENSMFAG00000044670	POLDIP3	100	91.211	Macaca_fascicularis
ENSMUSG00000041815	Poldip3	100	91.211	ENSMMUG00000047046	POLDIP3	100	91.211	Macaca_mulatta
ENSMUSG00000041815	Poldip3	100	91.211	ENSMNEG00000037068	POLDIP3	100	91.211	Macaca_nemestrina
ENSMUSG00000041815	Poldip3	100	48.434	ENSMAMG00000009151	poldip3	87	70.552	Mastacembelus_armatus
ENSMUSG00000041815	Poldip3	100	44.158	ENSMZEG00005005201	poldip3	100	42.717	Maylandia_zebra
ENSMUSG00000041815	Poldip3	95	73.134	ENSMGAG00000011986	POLDIP3	100	73.134	Meleagris_gallopavo
ENSMUSG00000041815	Poldip3	97	88.293	ENSMAUG00000014002	Poldip3	99	88.293	Mesocricetus_auratus
ENSMUSG00000041815	Poldip3	100	91.449	ENSMICG00000041767	POLDIP3	100	91.449	Microcebus_murinus
ENSMUSG00000041815	Poldip3	100	94.062	ENSMOCG00000014101	Poldip3	100	94.062	Microtus_ochrogaster
ENSMUSG00000041815	Poldip3	86	49.014	ENSMMOG00000004982	poldip3	97	48.732	Mola_mola
ENSMUSG00000041815	Poldip3	96	76.049	ENSMODG00000006932	-	57	76.049	Monodelphis_domestica
ENSMUSG00000041815	Poldip3	100	98.571	MGP_CAROLIEiJ_G0020093	Poldip3	100	98.571	Mus_caroli
ENSMUSG00000041815	Poldip3	100	97.143	MGP_PahariEiJ_G0020100	Poldip3	100	97.143	Mus_pahari
ENSMUSG00000041815	Poldip3	100	99.524	MGP_SPRETEiJ_G0020991	Poldip3	100	99.524	Mus_spretus
ENSMUSG00000041815	Poldip3	100	90.024	ENSMPUG00000016314	POLDIP3	100	90.024	Mustela_putorius_furo
ENSMUSG00000041815	Poldip3	99	85.442	ENSMLUG00000012408	POLDIP3	99	85.442	Myotis_lucifugus
ENSMUSG00000041815	Poldip3	100	92.619	ENSNGAG00000000210	Poldip3	100	92.619	Nannospalax_galili
ENSMUSG00000041815	Poldip3	100	42.857	ENSNBRG00000001837	poldip3	99	44.989	Neolamprologus_brichardi
ENSMUSG00000041815	Poldip3	100	90.816	ENSNLEG00000015950	POLDIP3	100	90.816	Nomascus_leucogenys
ENSMUSG00000041815	Poldip3	100	78.147	ENSMEUG00000013932	POLDIP3	100	78.147	Notamacropus_eugenii
ENSMUSG00000041815	Poldip3	100	88.836	ENSODEG00000014224	POLDIP3	100	88.836	Octodon_degus
ENSMUSG00000041815	Poldip3	100	42.490	ENSONIG00000008367	poldip3	100	42.772	Oreochromis_niloticus
ENSMUSG00000041815	Poldip3	97	70.048	ENSOANG00000011029	POLDIP3	98	70.048	Ornithorhynchus_anatinus
ENSMUSG00000041815	Poldip3	100	88.810	ENSOCUG00000016133	POLDIP3	99	88.810	Oryctolagus_cuniculus
ENSMUSG00000041815	Poldip3	100	46.853	ENSORLG00000014799	poldip3	100	47.454	Oryzias_latipes
ENSMUSG00000041815	Poldip3	100	42.276	ENSORLG00020006113	poldip3	100	42.480	Oryzias_latipes_hni
ENSMUSG00000041815	Poldip3	100	43.198	ENSORLG00015018234	poldip3	100	43.602	Oryzias_latipes_hsok
ENSMUSG00000041815	Poldip3	100	42.169	ENSOMEG00000007071	poldip3	100	41.767	Oryzias_melastigma
ENSMUSG00000041815	Poldip3	100	91.686	ENSOGAG00000008216	POLDIP3	100	91.686	Otolemur_garnettii
ENSMUSG00000041815	Poldip3	100	92.162	ENSOARG00000018993	POLDIP3	100	92.162	Ovis_aries
ENSMUSG00000041815	Poldip3	100	91.449	ENSPPAG00000036619	POLDIP3	100	91.449	Pan_paniscus
ENSMUSG00000041815	Poldip3	100	91.071	ENSPPRG00000021188	POLDIP3	100	91.071	Panthera_pardus
ENSMUSG00000041815	Poldip3	100	91.071	ENSPTIG00000021396	POLDIP3	100	91.071	Panthera_tigris_altaica
ENSMUSG00000041815	Poldip3	100	91.449	ENSPTRG00000014460	POLDIP3	100	91.449	Pan_troglodytes
ENSMUSG00000041815	Poldip3	100	91.211	ENSPANG00000007026	POLDIP3	100	91.211	Papio_anubis
ENSMUSG00000041815	Poldip3	96	46.170	ENSPKIG00000002188	poldip3	90	46.791	Paramormyrops_kingsleyae
ENSMUSG00000041815	Poldip3	96	43.205	ENSPKIG00000007231	poldip3	93	43.191	Paramormyrops_kingsleyae
ENSMUSG00000041815	Poldip3	95	75.931	ENSPSIG00000006347	POLDIP3	100	75.931	Pelodiscus_sinensis
ENSMUSG00000041815	Poldip3	100	94.076	ENSPEMG00000021065	Poldip3	100	94.076	Peromyscus_maniculatus_bairdii
ENSMUSG00000041815	Poldip3	100	39.866	ENSPMAG00000004894	poldip3	93	39.286	Petromyzon_marinus
ENSMUSG00000041815	Poldip3	100	77.672	ENSPCIG00000026194	POLDIP3	100	77.672	Phascolarctos_cinereus
ENSMUSG00000041815	Poldip3	100	48.700	ENSPFOG00000000926	poldip3	100	47.806	Poecilia_formosa
ENSMUSG00000041815	Poldip3	100	49.882	ENSPLAG00000005558	poldip3	100	49.406	Poecilia_latipinna
ENSMUSG00000041815	Poldip3	100	44.008	ENSPMEG00000018286	poldip3	95	51.366	Poecilia_mexicana
ENSMUSG00000041815	Poldip3	100	39.376	ENSPREG00000016505	poldip3	100	40.316	Poecilia_reticulata
ENSMUSG00000041815	Poldip3	100	91.449	ENSPPYG00000011899	POLDIP3	100	91.449	Pongo_abelii
ENSMUSG00000041815	Poldip3	100	90.736	ENSPCAG00000009424	POLDIP3	100	90.736	Procavia_capensis
ENSMUSG00000041815	Poldip3	100	92.162	ENSPCOG00000020271	POLDIP3	100	92.162	Propithecus_coquereli
ENSMUSG00000041815	Poldip3	100	90.024	ENSPVAG00000014131	POLDIP3	100	90.024	Pteropus_vampyrus
ENSMUSG00000041815	Poldip3	100	44.246	ENSPNYG00000020333	poldip3	100	42.717	Pundamilia_nyererei
ENSMUSG00000041815	Poldip3	100	44.556	ENSPNAG00000023036	poldip3	100	45.669	Pygocentrus_nattereri
ENSMUSG00000041815	Poldip3	100	95.952	ENSRNOG00000022877	Poldip3	100	95.952	Rattus_norvegicus
ENSMUSG00000041815	Poldip3	100	91.686	ENSRBIG00000041676	POLDIP3	100	91.686	Rhinopithecus_bieti
ENSMUSG00000041815	Poldip3	100	91.686	ENSRROG00000022379	POLDIP3	100	91.686	Rhinopithecus_roxellana
ENSMUSG00000041815	Poldip3	100	72.209	ENSSBOG00000025315	-	100	71.971	Saimiri_boliviensis_boliviensis
ENSMUSG00000041815	Poldip3	100	90.736	ENSSBOG00000021779	-	100	90.736	Saimiri_boliviensis_boliviensis
ENSMUSG00000041815	Poldip3	100	76.010	ENSSHAG00000005316	POLDIP3	98	76.010	Sarcophilus_harrisii
ENSMUSG00000041815	Poldip3	96	48.148	ENSSFOG00015012429	-	97	49.691	Scleropages_formosus
ENSMUSG00000041815	Poldip3	100	40.426	ENSSFOG00015012582	poldip3	100	41.006	Scleropages_formosus
ENSMUSG00000041815	Poldip3	100	49.639	ENSSMAG00000004609	poldip3	100	49.043	Scophthalmus_maximus
ENSMUSG00000041815	Poldip3	100	40.800	ENSSDUG00000016881	poldip3	94	49.468	Seriola_dumerili
ENSMUSG00000041815	Poldip3	100	41.036	ENSSLDG00000024763	poldip3	100	40.681	Seriola_lalandi_dorsalis
ENSMUSG00000041815	Poldip3	95	78.358	ENSSARG00000011587	POLDIP3	95	78.358	Sorex_araneus
ENSMUSG00000041815	Poldip3	100	74.057	ENSSPUG00000005362	POLDIP3	96	74.057	Sphenodon_punctatus
ENSMUSG00000041815	Poldip3	100	92.399	ENSSSCG00000000039	POLDIP3	100	92.399	Sus_scrofa
ENSMUSG00000041815	Poldip3	100	75.177	ENSTGUG00000009622	-	98	75.177	Taeniopygia_guttata
ENSMUSG00000041815	Poldip3	100	49.528	ENSTRUG00000006604	poldip3	100	48.821	Takifugu_rubripes
ENSMUSG00000041815	Poldip3	100	49.448	ENSTNIG00000010841	poldip3	100	49.227	Tetraodon_nigroviridis
ENSMUSG00000041815	Poldip3	100	90.499	ENSTBEG00000010978	POLDIP3	100	90.736	Tupaia_belangeri
ENSMUSG00000041815	Poldip3	95	91.771	ENSTTRG00000015129	POLDIP3	100	91.771	Tursiops_truncatus
ENSMUSG00000041815	Poldip3	100	90.024	ENSUAMG00000026181	POLDIP3	100	90.024	Ursus_americanus
ENSMUSG00000041815	Poldip3	93	90.909	ENSUMAG00000020385	POLDIP3	98	87.923	Ursus_maritimus
ENSMUSG00000041815	Poldip3	100	91.211	ENSVVUG00000002231	POLDIP3	100	91.211	Vulpes_vulpes
ENSMUSG00000041815	Poldip3	100	60.811	ENSXETG00000013412	poldip3	100	59.202	Xenopus_tropicalis
ENSMUSG00000041815	Poldip3	87	46.867	ENSXCOG00000015952	poldip3	95	47.222	Xiphophorus_couchianus
ENSMUSG00000041815	Poldip3	100	41.973	ENSXMAG00000006152	poldip3	100	41.313	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000346	transcription export complex	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006406	mRNA export from nucleus	-	IEA	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016973	poly(A)+ mRNA export from nucleus	22928037.	IDA	Process
GO:0016973	poly(A)+ mRNA export from nucleus	-	ISO	Process
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045727	positive regulation of translation	-	ISO	Process
GO:0051028	mRNA transport	-	IEA	Process