EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000041912 (Gene tree)
Gene ID: 72634
Gene Symbol: Tdrkh
Alias: 2700091C21Rik|Tdrd2
Full Name: tudor and KH domain containing protein
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 21396 bases
Position: chr3:94413273-94434668
Accession: 1919884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000142584	KH_1	PF00013.29	2.4e-34	1	2
ENSMUSP00000142584	KH_1	PF00013.29	2.4e-34	2	2
ENSMUSP00000041002	KH_1	PF00013.29	1.5e-33	1	2
ENSMUSP00000041002	KH_1	PF00013.29	1.5e-33	2	2
ENSMUSP00000129635	KH_1	PF00013.29	1.5e-33	1	2
ENSMUSP00000129635	KH_1	PF00013.29	1.5e-33	2	2
ENSMUSP00000142561	KH_1	PF00013.29	1.5e-33	1	2
ENSMUSP00000142561	KH_1	PF00013.29	1.5e-33	2	2
ENSMUSP00000143102	KH_1	PF00013.29	7.4e-28	1	2
ENSMUSP00000143102	KH_1	PF00013.29	7.4e-28	2	2
ENSMUSP00000143135	KH_1	PF00013.29	3.8e-19	1	1
ENSMUSP00000143256	KH_1	PF00013.29	3.2e-14	1	1
ENSMUSP00000143135	TUDOR	PF00567.24	6e-29	1	1
ENSMUSP00000143102	TUDOR	PF00567.24	6.8e-29	1	1
ENSMUSP00000041002	TUDOR	PF00567.24	6.9e-29	1	1
ENSMUSP00000129635	TUDOR	PF00567.24	6.9e-29	1	1
ENSMUSP00000142561	TUDOR	PF00567.24	6.9e-29	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000197495	-	2476	XM_017319749	ENSMUSP00000143135	515 (aa)	XP_017175238	A0A0G2JFE0
ENSMUST00000196606	-	2586	XM_017319747	ENSMUSP00000143102	556 (aa)	XP_017175236	A0A0G2JFB2
ENSMUST00000166032	-	5692	XM_006502138	ENSMUSP00000129635	560 (aa)	XP_006502201	Q80VL1
ENSMUST00000200486	-	1231	-	ENSMUSP00000142584	296 (aa)	-	A0A0G2JE08
ENSMUST00000045245	-	2642	-	ENSMUSP00000041002	560 (aa)	-	Q80VL1
ENSMUST00000197876	-	476	-	ENSMUSP00000142779	50 (aa)	-	A0A0G2JEH9
ENSMUST00000197901	-	2652	-	ENSMUSP00000142561	560 (aa)	-	Q80VL1
ENSMUST00000196386	-	1050	-	ENSMUSP00000143256	140 (aa)	-	A0A0G2JFP5

Gene Model

Click here to download ENSMUSG00000041912's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000041912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000041912	Tdrkh	52	30.625	ENSMUSG00000029814	Igf2bp3	55	30.625
ENSMUSG00000041912	Tdrkh	74	31.707	ENSMUSG00000026843	Fubp3	79	31.707
ENSMUSG00000041912	Tdrkh	50	30.833	ENSMUSG00000033581	Igf2bp2	52	31.933

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000041912	Tdrkh	100	91.429	ENSG00000182134	TDRKH	100	98.473	Homo_sapiens
ENSMUSG00000041912	Tdrkh	100	89.343	ENSAMEG00000000421	TDRKH	99	90.053	Ailuropoda_melanoleuca
ENSMUSG00000041912	Tdrkh	85	56.735	ENSACAG00000007457	TDRKH	95	56.735	Anolis_carolinensis
ENSMUSG00000041912	Tdrkh	100	91.071	ENSANAG00000021663	TDRKH	98	92.673	Aotus_nancymaae
ENSMUSG00000041912	Tdrkh	100	90.893	ENSBTAG00000021594	TDRKH	99	90.893	Bos_taurus
ENSMUSG00000041912	Tdrkh	99	91.837	ENSCJAG00000007955	TDRKH	99	90.714	Callithrix_jacchus
ENSMUSG00000041912	Tdrkh	100	90.941	ENSCAFG00000012856	TDRKH	99	90.941	Canis_familiaris
ENSMUSG00000041912	Tdrkh	100	90.941	ENSCAFG00020009606	TDRKH	99	90.941	Canis_lupus_dingo
ENSMUSG00000041912	Tdrkh	99	91.497	ENSCHIG00000025326	TDRKH	99	90.000	Capra_hircus
ENSMUSG00000041912	Tdrkh	99	92.857	ENSTSYG00000010405	TDRKH	99	90.860	Carlito_syrichta
ENSMUSG00000041912	Tdrkh	99	88.776	ENSCAPG00000007565	TDRKH	97	88.327	Cavia_aperea
ENSMUSG00000041912	Tdrkh	100	90.357	ENSCPOG00000003556	TDRKH	99	90.357	Cavia_porcellus
ENSMUSG00000041912	Tdrkh	100	90.714	ENSCCAG00000033931	TDRKH	99	90.714	Cebus_capucinus
ENSMUSG00000041912	Tdrkh	99	93.197	ENSCATG00000041878	TDRKH	99	91.607	Cercocebus_atys
ENSMUSG00000041912	Tdrkh	100	88.393	ENSCLAG00000001088	TDRKH	99	88.393	Chinchilla_lanigera
ENSMUSG00000041912	Tdrkh	99	92.857	ENSCSAG00000001820	TDRKH	99	91.607	Chlorocebus_sabaeus
ENSMUSG00000041912	Tdrkh	94	86.375	ENSCHOG00000000264	TDRKH	88	87.143	Choloepus_hoffmanni
ENSMUSG00000041912	Tdrkh	76	83.178	ENSCPBG00000008824	TDRKH	89	63.586	Chrysemys_picta_bellii
ENSMUSG00000041912	Tdrkh	99	92.177	ENSCANG00000037367	TDRKH	99	90.536	Colobus_angolensis_palliatus
ENSMUSG00000041912	Tdrkh	98	95.502	ENSCGRG00001006583	-	99	94.234	Cricetulus_griseus_chok1gshd
ENSMUSG00000041912	Tdrkh	98	70.588	ENSCGRG00001011699	-	99	68.333	Cricetulus_griseus_chok1gshd
ENSMUSG00000041912	Tdrkh	96	67.138	ENSCGRG00001010793	-	90	68.100	Cricetulus_griseus_chok1gshd
ENSMUSG00000041912	Tdrkh	96	66.784	ENSCGRG00000012138	-	90	67.742	Cricetulus_griseus_crigri
ENSMUSG00000041912	Tdrkh	98	70.588	ENSCGRG00000013230	-	99	68.148	Cricetulus_griseus_crigri
ENSMUSG00000041912	Tdrkh	98	95.502	ENSCGRG00000012937	-	99	94.234	Cricetulus_griseus_crigri
ENSMUSG00000041912	Tdrkh	92	91.636	ENSDNOG00000035650	TDRKH	100	88.632	Dasypus_novemcinctus
ENSMUSG00000041912	Tdrkh	100	92.321	ENSDORG00000015322	Tdrkh	99	92.321	Dipodomys_ordii
ENSMUSG00000041912	Tdrkh	99	81.996	ENSETEG00000008020	TDRKH	99	81.996	Echinops_telfairi
ENSMUSG00000041912	Tdrkh	87	36.647	ENSEBUG00000010481	TDRKH	83	36.452	Eptatretus_burgeri
ENSMUSG00000041912	Tdrkh	100	91.250	ENSEASG00005005213	TDRKH	99	91.250	Equus_asinus_asinus
ENSMUSG00000041912	Tdrkh	99	93.197	ENSECAG00000013096	TDRKH	97	94.036	Equus_caballus
ENSMUSG00000041912	Tdrkh	76	94.393	ENSEEUG00000015952	TDRKH	71	95.000	Erinaceus_europaeus
ENSMUSG00000041912	Tdrkh	100	90.925	ENSFCAG00000010980	TDRKH	99	90.925	Felis_catus
ENSMUSG00000041912	Tdrkh	100	88.393	ENSFDAG00000015315	TDRKH	99	88.393	Fukomys_damarensis
ENSMUSG00000041912	Tdrkh	97	56.364	ENSGALG00000031812	TDRKH	96	56.364	Gallus_gallus
ENSMUSG00000041912	Tdrkh	76	85.047	ENSGAGG00000005447	TDRKH	99	62.218	Gopherus_agassizii
ENSMUSG00000041912	Tdrkh	99	92.857	ENSGGOG00000025419	TDRKH	98	93.241	Gorilla_gorilla
ENSMUSG00000041912	Tdrkh	100	88.256	ENSHGLG00000007478	TDRKH	99	88.256	Heterocephalus_glaber_female
ENSMUSG00000041912	Tdrkh	100	88.256	ENSHGLG00100007927	TDRKH	99	88.256	Heterocephalus_glaber_male
ENSMUSG00000041912	Tdrkh	100	92.500	ENSSTOG00000006506	TDRKH	99	92.500	Ictidomys_tridecemlineatus
ENSMUSG00000041912	Tdrkh	99	91.186	ENSJJAG00000000323	Tdrkh	99	91.071	Jaculus_jaculus
ENSMUSG00000041912	Tdrkh	72	67.925	ENSLACG00000017639	TDRKH	98	54.878	Latimeria_chalumnae
ENSMUSG00000041912	Tdrkh	99	88.235	ENSLAFG00000006274	TDRKH	99	88.235	Loxodonta_africana
ENSMUSG00000041912	Tdrkh	99	93.537	ENSMFAG00000041641	TDRKH	99	91.964	Macaca_fascicularis
ENSMUSG00000041912	Tdrkh	99	93.537	ENSMMUG00000009096	TDRKH	97	93.638	Macaca_mulatta
ENSMUSG00000041912	Tdrkh	99	93.537	ENSMNEG00000021524	TDRKH	99	91.964	Macaca_nemestrina
ENSMUSG00000041912	Tdrkh	99	93.197	ENSMLEG00000033882	TDRKH	99	91.607	Mandrillus_leucophaeus
ENSMUSG00000041912	Tdrkh	99	94.558	ENSMAUG00000019159	Tdrkh	99	93.178	Mesocricetus_auratus
ENSMUSG00000041912	Tdrkh	99	92.857	ENSMICG00000010682	-	99	91.786	Microcebus_murinus
ENSMUSG00000041912	Tdrkh	100	72.143	ENSMICG00000042330	-	100	72.143	Microcebus_murinus
ENSMUSG00000041912	Tdrkh	99	92.517	ENSMOCG00000002113	-	99	84.783	Microtus_ochrogaster
ENSMUSG00000041912	Tdrkh	99	71.429	ENSMOCG00000014074	-	99	65.658	Microtus_ochrogaster
ENSMUSG00000041912	Tdrkh	100	81.195	ENSMODG00000018906	TDRKH	96	81.195	Monodelphis_domestica
ENSMUSG00000041912	Tdrkh	100	100.000	MGP_CAROLIEiJ_G0025310	Tdrkh	100	100.000	Mus_caroli
ENSMUSG00000041912	Tdrkh	100	99.286	MGP_PahariEiJ_G0026753	Tdrkh	100	99.286	Mus_pahari
ENSMUSG00000041912	Tdrkh	100	100.000	MGP_SPRETEiJ_G0026252	Tdrkh	100	100.000	Mus_spretus
ENSMUSG00000041912	Tdrkh	99	90.878	ENSMPUG00000003558	TDRKH	99	90.214	Mustela_putorius_furo
ENSMUSG00000041912	Tdrkh	100	88.929	ENSMLUG00000002213	TDRKH	99	88.929	Myotis_lucifugus
ENSMUSG00000041912	Tdrkh	100	94.643	ENSNGAG00000017825	Tdrkh	100	94.643	Nannospalax_galili
ENSMUSG00000041912	Tdrkh	99	92.517	ENSNLEG00000010284	TDRKH	98	92.843	Nomascus_leucogenys
ENSMUSG00000041912	Tdrkh	95	94.805	ENSMEUG00000006144	TDRKH	89	94.805	Notamacropus_eugenii
ENSMUSG00000041912	Tdrkh	86	90.909	ENSOPRG00000016049	TDRKH	80	90.909	Ochotona_princeps
ENSMUSG00000041912	Tdrkh	100	88.214	ENSODEG00000009532	-	99	88.214	Octodon_degus
ENSMUSG00000041912	Tdrkh	100	86.691	ENSODEG00000001075	-	99	86.691	Octodon_degus
ENSMUSG00000041912	Tdrkh	62	72.340	ENSOANG00000001094	-	88	72.340	Ornithorhynchus_anatinus
ENSMUSG00000041912	Tdrkh	99	86.735	ENSOCUG00000001387	TDRKH	99	79.286	Oryctolagus_cuniculus
ENSMUSG00000041912	Tdrkh	98	75.517	ENSOGAG00000030085	-	98	73.793	Otolemur_garnettii
ENSMUSG00000041912	Tdrkh	99	87.075	ENSOGAG00000001839	-	99	82.187	Otolemur_garnettii
ENSMUSG00000041912	Tdrkh	99	75.271	ENSOGAG00000032601	-	99	75.271	Otolemur_garnettii
ENSMUSG00000041912	Tdrkh	99	91.497	ENSOARG00000021052	TDRKH	99	90.000	Ovis_aries
ENSMUSG00000041912	Tdrkh	99	93.197	ENSPPAG00000028994	TDRKH	99	91.964	Pan_paniscus
ENSMUSG00000041912	Tdrkh	99	92.568	ENSPPRG00000001585	TDRKH	99	91.459	Panthera_pardus
ENSMUSG00000041912	Tdrkh	99	92.568	ENSPTIG00000019916	TDRKH	99	91.459	Panthera_tigris_altaica
ENSMUSG00000041912	Tdrkh	99	93.197	ENSPTRG00000001297	TDRKH	98	93.439	Pan_troglodytes
ENSMUSG00000041912	Tdrkh	99	92.857	ENSPANG00000001986	TDRKH	99	91.607	Papio_anubis
ENSMUSG00000041912	Tdrkh	76	81.308	ENSPSIG00000008541	TDRKH	100	62.197	Pelodiscus_sinensis
ENSMUSG00000041912	Tdrkh	99	98.299	ENSPEMG00000011171	Tdrkh	100	96.964	Peromyscus_maniculatus_bairdii
ENSMUSG00000041912	Tdrkh	100	81.754	ENSPCIG00000021201	TDRKH	99	81.754	Phascolarctos_cinereus
ENSMUSG00000041912	Tdrkh	99	92.857	ENSPPYG00000000855	TDRKH	99	91.786	Pongo_abelii
ENSMUSG00000041912	Tdrkh	99	91.497	ENSPCOG00000027505	TDRKH	99	89.464	Propithecus_coquereli
ENSMUSG00000041912	Tdrkh	100	86.964	ENSPVAG00000005234	TDRKH	99	86.964	Pteropus_vampyrus
ENSMUSG00000041912	Tdrkh	99	99.660	ENSRNOG00000020860	Tdrkh	100	98.571	Rattus_norvegicus
ENSMUSG00000041912	Tdrkh	100	91.607	ENSRBIG00000044860	TDRKH	99	91.607	Rhinopithecus_bieti
ENSMUSG00000041912	Tdrkh	100	91.607	ENSRROG00000036923	TDRKH	99	91.607	Rhinopithecus_roxellana
ENSMUSG00000041912	Tdrkh	100	90.541	ENSSBOG00000034454	TDRKH	99	72.321	Saimiri_boliviensis_boliviensis
ENSMUSG00000041912	Tdrkh	100	81.898	ENSSHAG00000015859	TDRKH	88	81.898	Sarcophilus_harrisii
ENSMUSG00000041912	Tdrkh	99	88.776	ENSSARG00000008525	TDRKH	99	78.712	Sorex_araneus
ENSMUSG00000041912	Tdrkh	98	57.475	ENSSPUG00000002369	TDRKH	95	62.452	Sphenodon_punctatus
ENSMUSG00000041912	Tdrkh	99	90.476	ENSSSCG00000027770	TDRKH	100	89.606	Sus_scrofa
ENSMUSG00000041912	Tdrkh	100	90.000	ENSTBEG00000011201	TDRKH	99	90.000	Tupaia_belangeri
ENSMUSG00000041912	Tdrkh	100	82.857	ENSTTRG00000003149	TDRKH	99	82.857	Tursiops_truncatus
ENSMUSG00000041912	Tdrkh	100	89.858	ENSUAMG00000019589	TDRKH	99	89.858	Ursus_americanus
ENSMUSG00000041912	Tdrkh	100	90.036	ENSUMAG00000001456	TDRKH	99	90.036	Ursus_maritimus
ENSMUSG00000041912	Tdrkh	100	91.071	ENSVPAG00000000666	TDRKH	99	91.071	Vicugna_pacos
ENSMUSG00000041912	Tdrkh	100	91.459	ENSVVUG00000013241	TDRKH	99	92.039	Vulpes_vulpes
ENSMUSG00000041912	Tdrkh	98	38.811	ENSXETG00000019909	tdrkh	91	40.189	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	19918066.23714778.	IPI	Function
GO:0005737	cytoplasm	19918066.	IDA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	23714778.	IDA	Component
GO:0007140	male meiotic nuclear division	23714778.	IMP	Process
GO:0007283	spermatogenesis	23714778.	IMP	Process
GO:0009566	fertilization	23714778.	IMP	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0034587	piRNA metabolic process	23714778.	IMP	Process
GO:0043046	DNA methylation involved in gamete generation	23714778.	IMP	Process
GO:0071546	pi-body	23714778.	IDA	Component
GO:0071547	piP-body	23714778.	IDA	Component