EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000042079 (Gene tree)
Gene ID: 98758
Gene Symbol: Hnrnpf
Alias: 4833420I20Rik|Hnrpf
Full Name: heterogeneous nuclear ribonucleoprotein F
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 25299 bases
Position: chr6:117900324-117925622
Accession: 2138741
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000045048	zf-RNPHF	PF08080.12	6.3e-22	1	1
ENSMUSP00000126817	zf-RNPHF	PF08080.12	6.3e-22	1	1
ENSMUSP00000130023	zf-RNPHF	PF08080.12	6.3e-22	1	1
ENSMUSP00000136700	zf-RNPHF	PF08080.12	6.3e-22	1	1
ENSMUSP00000137632	zf-RNPHF	PF08080.12	6.3e-22	1	1
ENSMUSP00000045048	RRM_1	PF00076.22	2.3e-28	1	2
ENSMUSP00000045048	RRM_1	PF00076.22	2.3e-28	2	2
ENSMUSP00000126817	RRM_1	PF00076.22	2.3e-28	1	2
ENSMUSP00000126817	RRM_1	PF00076.22	2.3e-28	2	2
ENSMUSP00000130023	RRM_1	PF00076.22	2.3e-28	1	2
ENSMUSP00000130023	RRM_1	PF00076.22	2.3e-28	2	2
ENSMUSP00000136700	RRM_1	PF00076.22	2.3e-28	1	2
ENSMUSP00000136700	RRM_1	PF00076.22	2.3e-28	2	2
ENSMUSP00000137632	RRM_1	PF00076.22	2.3e-28	1	2
ENSMUSP00000137632	RRM_1	PF00076.22	2.3e-28	2	2
ENSMUSP00000136436	RRM_1	PF00076.22	3.7e-18	1	1
ENSMUSP00000136162	RRM_1	PF00076.22	5.6e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000163168	-	2401	-	ENSMUSP00000130023	415 (aa)	-	Q9Z2X1
ENSMUST00000179478	-	956	-	ENSMUSP00000136436	208 (aa)	-	J3QMT0
ENSMUST00000177570	-	1104	-	ENSMUSP00000136162	232 (aa)	-	J3QM80
ENSMUST00000180341	-	1922	-	ENSMUSP00000136700	415 (aa)	-	Q9Z2X1
ENSMUST00000167182	-	2271	-	ENSMUSP00000126817	415 (aa)	-	Q9Z2X1
ENSMUST00000177918	-	538	-	ENSMUSP00000137091	70 (aa)	-	J3QP45
ENSMUST00000035493	-	2147	-	ENSMUSP00000045048	415 (aa)	-	Q9Z2X1
ENSMUST00000179224	-	391	-	ENSMUSP00000136751	14 (aa)	-	J3QNH2
ENSMUST00000180020	-	2280	XM_006506829	ENSMUSP00000137632	415 (aa)	XP_006506892	Q9Z2X1
ENSMUST00000177743	-	515	-	ENSMUSP00000136477	31 (aa)	-	J3QMV8

Gene Model

Click here to download ENSMUSG00000042079's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042079's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000042079	Hnrnpf	100	78.846	ENSMUSG00000045427	Hnrnph2	97	72.644
ENSMUSG00000042079	Hnrnpf	100	79.808	ENSMUSG00000007850	Hnrnph1	97	73.793
ENSMUSG00000042079	Hnrnpf	99	70.690	ENSMUSG00000020069	Hnrnph3	97	58.232
ENSMUSG00000042079	Hnrnpf	97	44.811	ENSMUSG00000044221	Grsf1	97	47.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042079	Hnrnpf	100	98.072	ENSG00000169813	HNRNPF	100	98.072	Homo_sapiens
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSAMEG00000018983	HNRNPF	100	97.349	Ailuropoda_melanoleuca
ENSMUSG00000042079	Hnrnpf	100	82.692	ENSANAG00000033452	-	89	82.703	Aotus_nancymaae
ENSMUSG00000042079	Hnrnpf	100	97.115	ENSANAG00000033285	-	100	95.422	Aotus_nancymaae
ENSMUSG00000042079	Hnrnpf	100	98.077	ENSBTAG00000008853	HNRNPF	100	97.349	Bos_taurus
ENSMUSG00000042079	Hnrnpf	100	79.714	ENSBTAG00000020513	-	100	79.714	Bos_taurus
ENSMUSG00000042079	Hnrnpf	100	98.554	ENSCJAG00000008291	HNRNPF	100	98.554	Callithrix_jacchus
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSCAFG00000007044	HNRNPF	100	97.349	Canis_familiaris
ENSMUSG00000042079	Hnrnpf	100	98.077	ENSCHIG00000006714	HNRNPF	100	97.349	Capra_hircus
ENSMUSG00000042079	Hnrnpf	97	72.616	ENSCHIG00000022971	-	99	72.616	Capra_hircus
ENSMUSG00000042079	Hnrnpf	100	85.646	ENSTSYG00000002112	-	100	83.173	Carlito_syrichta
ENSMUSG00000042079	Hnrnpf	100	98.276	ENSTSYG00000030439	-	100	97.831	Carlito_syrichta
ENSMUSG00000042079	Hnrnpf	99	98.792	ENSCAPG00000011521	HNRNPF	99	98.792	Cavia_aperea
ENSMUSG00000042079	Hnrnpf	99	98.792	ENSCPOG00000003678	HNRNPF	99	98.792	Cavia_porcellus
ENSMUSG00000042079	Hnrnpf	100	93.750	ENSCCAG00000028687	-	100	79.759	Cebus_capucinus
ENSMUSG00000042079	Hnrnpf	100	98.313	ENSCCAG00000031457	-	100	98.313	Cebus_capucinus
ENSMUSG00000042079	Hnrnpf	99	98.792	ENSCLAG00000005161	HNRNPF	99	98.792	Chinchilla_lanigera
ENSMUSG00000042079	Hnrnpf	100	96.627	ENSCANG00000003086	-	100	96.627	Colobus_angolensis_palliatus
ENSMUSG00000042079	Hnrnpf	100	100.000	ENSCGRG00001016276	Hnrnpf	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000042079	Hnrnpf	100	71.121	ENSCGRG00001016206	-	88	75.128	Cricetulus_griseus_chok1gshd
ENSMUSG00000042079	Hnrnpf	100	95.259	ENSDNOG00000030849	-	100	93.253	Dasypus_novemcinctus
ENSMUSG00000042079	Hnrnpf	100	99.138	ENSDORG00000024298	-	100	98.072	Dipodomys_ordii
ENSMUSG00000042079	Hnrnpf	100	89.639	ENSDORG00000005431	-	100	89.639	Dipodomys_ordii
ENSMUSG00000042079	Hnrnpf	100	91.325	ENSDORG00000008260	-	100	91.325	Dipodomys_ordii
ENSMUSG00000042079	Hnrnpf	100	95.259	ENSDORG00000024936	-	100	95.181	Dipodomys_ordii
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSEASG00005006903	HNRNPF	100	97.590	Equus_asinus_asinus
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSECAG00000003229	HNRNPF	100	93.735	Equus_caballus
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSFCAG00000028219	-	100	97.349	Felis_catus
ENSMUSG00000042079	Hnrnpf	99	96.135	ENSFDAG00000007858	-	98	89.313	Fukomys_damarensis
ENSMUSG00000042079	Hnrnpf	98	82.955	ENSFDAG00000015308	-	99	81.159	Fukomys_damarensis
ENSMUSG00000042079	Hnrnpf	99	98.792	ENSFDAG00000011431	-	99	98.792	Fukomys_damarensis
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSGGOG00000010867	HNRNPF	93	97.867	Gorilla_gorilla
ENSMUSG00000042079	Hnrnpf	99	95.169	ENSHGLG00000014139	-	97	93.883	Heterocephalus_glaber_female
ENSMUSG00000042079	Hnrnpf	99	98.551	ENSHGLG00000000147	-	99	98.551	Heterocephalus_glaber_female
ENSMUSG00000042079	Hnrnpf	99	90.870	ENSHGLG00000017607	-	100	88.406	Heterocephalus_glaber_female
ENSMUSG00000042079	Hnrnpf	100	96.154	ENSHGLG00000010276	-	100	94.217	Heterocephalus_glaber_female
ENSMUSG00000042079	Hnrnpf	99	96.618	ENSHGLG00100019572	-	99	94.444	Heterocephalus_glaber_male
ENSMUSG00000042079	Hnrnpf	99	90.870	ENSHGLG00100019910	-	100	90.657	Heterocephalus_glaber_male
ENSMUSG00000042079	Hnrnpf	99	98.551	ENSHGLG00100020825	-	100	97.525	Heterocephalus_glaber_male
ENSMUSG00000042079	Hnrnpf	99	96.618	ENSHGLG00100019558	-	100	93.961	Heterocephalus_glaber_male
ENSMUSG00000042079	Hnrnpf	99	96.618	ENSHGLG00100010905	-	97	86.702	Heterocephalus_glaber_male
ENSMUSG00000042079	Hnrnpf	100	98.795	ENSSTOG00000025560	-	100	98.795	Ictidomys_tridecemlineatus
ENSMUSG00000042079	Hnrnpf	100	88.942	ENSSTOG00000022853	-	100	87.981	Ictidomys_tridecemlineatus
ENSMUSG00000042079	Hnrnpf	100	83.213	ENSSTOG00000023820	-	100	83.213	Ictidomys_tridecemlineatus
ENSMUSG00000042079	Hnrnpf	98	95.430	ENSJJAG00000014334	-	99	95.430	Jaculus_jaculus
ENSMUSG00000042079	Hnrnpf	100	91.827	ENSJJAG00000000554	-	100	74.402	Jaculus_jaculus
ENSMUSG00000042079	Hnrnpf	100	84.615	ENSJJAG00000022288	-	100	82.651	Jaculus_jaculus
ENSMUSG00000042079	Hnrnpf	100	64.578	ENSJJAG00000014424	-	100	64.578	Jaculus_jaculus
ENSMUSG00000042079	Hnrnpf	100	94.231	ENSJJAG00000017385	-	100	89.157	Jaculus_jaculus
ENSMUSG00000042079	Hnrnpf	99	96.618	ENSLAFG00000000424	HNRNPF	99	95.904	Loxodonta_africana
ENSMUSG00000042079	Hnrnpf	100	98.072	ENSMFAG00000021184	HNRNPF	100	98.072	Macaca_fascicularis
ENSMUSG00000042079	Hnrnpf	100	98.072	ENSMMUG00000020982	HNRNPF	100	98.072	Macaca_mulatta
ENSMUSG00000042079	Hnrnpf	100	98.072	ENSMLEG00000023515	HNRNPF	100	98.072	Mandrillus_leucophaeus
ENSMUSG00000042079	Hnrnpf	100	100.000	ENSMAUG00000007892	Hnrnpf	100	100.000	Mesocricetus_auratus
ENSMUSG00000042079	Hnrnpf	100	83.654	ENSMICG00000044171	-	99	79.335	Microcebus_murinus
ENSMUSG00000042079	Hnrnpf	100	83.173	ENSMICG00000043739	-	99	79.469	Microcebus_murinus
ENSMUSG00000042079	Hnrnpf	100	99.519	ENSMOCG00000014915	Hnrnpf	100	98.795	Microtus_ochrogaster
ENSMUSG00000042079	Hnrnpf	100	98.795	MGP_PahariEiJ_G0026903	-	100	98.795	Mus_pahari
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSMPUG00000017283	HNRNPF	99	97.494	Mustela_putorius_furo
ENSMUSG00000042079	Hnrnpf	100	96.552	ENSMLUG00000007261	HNRNPF	100	95.433	Myotis_lucifugus
ENSMUSG00000042079	Hnrnpf	100	71.325	ENSNGAG00000009482	-	100	71.325	Nannospalax_galili
ENSMUSG00000042079	Hnrnpf	100	83.173	ENSNGAG00000014079	-	100	81.205	Nannospalax_galili
ENSMUSG00000042079	Hnrnpf	100	99.518	ENSNGAG00000010409	-	100	99.518	Nannospalax_galili
ENSMUSG00000042079	Hnrnpf	100	98.077	ENSNLEG00000019098	HNRNPF	100	98.072	Nomascus_leucogenys
ENSMUSG00000042079	Hnrnpf	99	94.203	ENSODEG00000002359	-	99	91.748	Octodon_degus
ENSMUSG00000042079	Hnrnpf	99	98.792	ENSODEG00000019266	-	99	98.792	Octodon_degus
ENSMUSG00000042079	Hnrnpf	100	98.313	ENSOCUG00000024719	-	100	98.313	Oryctolagus_cuniculus
ENSMUSG00000042079	Hnrnpf	100	92.771	ENSOCUG00000024604	-	100	92.771	Oryctolagus_cuniculus
ENSMUSG00000042079	Hnrnpf	99	95.169	ENSOGAG00000013734	-	99	91.084	Otolemur_garnettii
ENSMUSG00000042079	Hnrnpf	100	93.735	ENSOGAG00000030480	-	100	93.735	Otolemur_garnettii
ENSMUSG00000042079	Hnrnpf	100	98.077	ENSOARG00000003995	HNRNPF	92	98.365	Ovis_aries
ENSMUSG00000042079	Hnrnpf	100	79.759	ENSOARG00000016658	-	100	79.759	Ovis_aries
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSPPRG00000021222	HNRNPF	100	97.349	Panthera_pardus
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSPTIG00000009644	HNRNPF	100	97.349	Panthera_tigris_altaica
ENSMUSG00000042079	Hnrnpf	100	98.072	ENSPTRG00000002446	HNRNPF	100	98.072	Pan_troglodytes
ENSMUSG00000042079	Hnrnpf	100	97.831	ENSPANG00000002212	HNRNPF	100	97.831	Papio_anubis
ENSMUSG00000042079	Hnrnpf	100	98.072	ENSPPYG00000002212	HNRNPF	100	98.072	Pongo_abelii
ENSMUSG00000042079	Hnrnpf	100	95.690	ENSPCAG00000013169	HNRNPF	100	95.192	Procavia_capensis
ENSMUSG00000042079	Hnrnpf	100	96.145	ENSPVAG00000011646	HNRNPF	100	96.145	Pteropus_vampyrus
ENSMUSG00000042079	Hnrnpf	100	100.000	ENSRNOG00000014562	Hnrnpf	100	100.000	Rattus_norvegicus
ENSMUSG00000042079	Hnrnpf	100	98.072	ENSRROG00000001235	HNRNPF	100	98.072	Rhinopithecus_roxellana
ENSMUSG00000042079	Hnrnpf	100	98.554	ENSSBOG00000018361	HNRNPF	100	98.554	Saimiri_boliviensis_boliviensis
ENSMUSG00000042079	Hnrnpf	100	98.276	ENSSARG00000010059	HNRNPF	100	98.072	Sorex_araneus
ENSMUSG00000042079	Hnrnpf	100	97.115	ENSSSCG00000010203	-	100	96.627	Sus_scrofa
ENSMUSG00000042079	Hnrnpf	99	75.610	ENSSSCG00000024956	-	89	73.009	Sus_scrofa
ENSMUSG00000042079	Hnrnpf	100	69.828	ENSTBEG00000016094	HNRNPF	100	71.605	Tupaia_belangeri
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSUAMG00000000455	HNRNPF	100	97.349	Ursus_americanus
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSUMAG00000016485	HNRNPF	100	97.349	Ursus_maritimus
ENSMUSG00000042079	Hnrnpf	100	97.596	ENSVVUG00000021261	HNRNPF	100	97.349	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008134	transcription factor binding	-	ISO	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0017025	TBP-class protein binding	-	ISO	Function
GO:0043484	regulation of RNA splicing	-	ISO	Process
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component