EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000042308 (Gene tree)
Gene ID: 233904
Gene Symbol: Setd1a
Alias: KMT2F
Full Name: SET domain containing 1A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 23453 bases
Position: chr7:127776670-127800122
Accession: 2446244
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000120666	RRM_1	PF00076.22	7.9e-07	1	1
ENSMUSP00000115248	RRM_1	PF00076.22	1.2e-06	1	1
ENSMUSP00000037600	RRM_1	PF00076.22	1.5e-05	1	1
ENSMUSP00000047672	RRM_1	PF00076.22	1.5e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000047075	-	6487	XM_017322211	ENSMUSP00000047672	1716 (aa)	XP_017177700	E9PYH6
ENSMUST00000144406	-	916	-	ENSMUSP00000115248	247 (aa)	-	D3YUD4
ENSMUST00000047157	-	5927	-	ENSMUSP00000037600	1716 (aa)	-	E9PYH6
ENSMUST00000141439	-	389	-	-	- (aa)	-	-
ENSMUST00000126761	-	730	-	ENSMUSP00000120666	196 (aa)	-	D3YX07
ENSMUST00000143951	-	315	-	ENSMUSP00000115994	70 (aa)	-	D3YXL2

Gene Model

Click here to download ENSMUSG00000042308's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042308's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042308	Setd1a	94	96.537	ENSAMEG00000007540	-	84	91.935	Ailuropoda_melanoleuca
ENSMUSG00000042308	Setd1a	100	78.061	ENSACAG00000007606	-	60	60.139	Anolis_carolinensis
ENSMUSG00000042308	Setd1a	100	98.469	ENSANAG00000021698	-	100	84.647	Aotus_nancymaae
ENSMUSG00000042308	Setd1a	100	98.469	ENSTSYG00000014425	-	100	85.930	Carlito_syrichta
ENSMUSG00000042308	Setd1a	95	86.760	ENSCAPG00000006491	-	94	91.996	Cavia_aperea
ENSMUSG00000042308	Setd1a	100	78.680	ENSCPBG00000010830	-	74	60.884	Chrysemys_picta_bellii
ENSMUSG00000042308	Setd1a	100	98.469	ENSCANG00000038478	-	56	88.889	Colobus_angolensis_palliatus
ENSMUSG00000042308	Setd1a	100	72.589	ENSCVAG00000011672	setd1a	51	81.419	Cyprinodon_variegatus
ENSMUSG00000042308	Setd1a	100	70.558	ENSDARG00000060030	setd1a	52	82.770	Danio_rerio
ENSMUSG00000042308	Setd1a	100	98.469	ENSDNOG00000025514	-	98	89.335	Dasypus_novemcinctus
ENSMUSG00000042308	Setd1a	100	98.469	ENSDORG00000010637	-	100	96.761	Dipodomys_ordii
ENSMUSG00000042308	Setd1a	100	94.388	ENSETEG00000014170	-	63	82.796	Echinops_telfairi
ENSMUSG00000042308	Setd1a	100	97.959	ENSEASG00005011195	-	100	87.674	Equus_asinus_asinus
ENSMUSG00000042308	Setd1a	100	98.469	ENSFDAG00000001621	-	99	97.154	Fukomys_damarensis
ENSMUSG00000042308	Setd1a	100	72.081	ENSFHEG00000023258	setd1a	64	75.170	Fundulus_heteroclitus
ENSMUSG00000042308	Setd1a	100	71.574	ENSGAFG00000011698	setd1a	56	62.838	Gambusia_affinis
ENSMUSG00000042308	Setd1a	100	79.188	ENSGAGG00000010781	-	68	72.615	Gopherus_agassizii
ENSMUSG00000042308	Setd1a	100	73.096	ENSHBUG00000008893	setd1a	51	81.419	Haplochromis_burtoni
ENSMUSG00000042308	Setd1a	100	98.469	ENSHGLG00000014238	-	100	87.565	Heterocephalus_glaber_female
ENSMUSG00000042308	Setd1a	100	98.469	ENSHGLG00100010551	-	98	95.635	Heterocephalus_glaber_male
ENSMUSG00000042308	Setd1a	100	70.051	ENSIPUG00000007413	setd1a	50	81.081	Ictalurus_punctatus
ENSMUSG00000042308	Setd1a	100	99.490	ENSJJAG00000015314	-	100	96.356	Jaculus_jaculus
ENSMUSG00000042308	Setd1a	100	98.469	ENSMNEG00000032572	-	100	85.921	Macaca_nemestrina
ENSMUSG00000042308	Setd1a	100	72.081	ENSMAMG00000021851	setd1a	69	76.014	Mastacembelus_armatus
ENSMUSG00000042308	Setd1a	100	99.490	ENSMAUG00000008959	-	100	94.444	Mesocricetus_auratus
ENSMUSG00000042308	Setd1a	100	72.081	ENSMMOG00000016992	setd1a	61	80.068	Mola_mola
ENSMUSG00000042308	Setd1a	99	85.204	ENSMODG00000001726	-	99	76.481	Monodelphis_domestica
ENSMUSG00000042308	Setd1a	100	99.490	MGP_CAROLIEiJ_G0030519	-	100	99.490	Mus_caroli
ENSMUSG00000042308	Setd1a	100	99.490	MGP_PahariEiJ_G0013726	-	100	99.490	Mus_pahari
ENSMUSG00000042308	Setd1a	100	99.595	MGP_SPRETEiJ_G0031633	Setd1a	100	99.595	Mus_spretus
ENSMUSG00000042308	Setd1a	100	98.469	ENSMPUG00000011867	-	68	97.251	Mustela_putorius_furo
ENSMUSG00000042308	Setd1a	92	98.333	ENSMLUG00000027303	-	79	85.782	Myotis_lucifugus
ENSMUSG00000042308	Setd1a	100	99.490	ENSNGAG00000012923	-	100	96.761	Nannospalax_galili
ENSMUSG00000042308	Setd1a	100	73.096	ENSNBRG00000004760	setd1a	53	78.378	Neolamprologus_brichardi
ENSMUSG00000042308	Setd1a	100	86.841	ENSNLEG00000016072	-	100	87.239	Nomascus_leucogenys
ENSMUSG00000042308	Setd1a	99	84.694	ENSMEUG00000003396	-	100	77.328	Notamacropus_eugenii
ENSMUSG00000042308	Setd1a	100	98.469	ENSOPRG00000016034	-	100	86.103	Ochotona_princeps
ENSMUSG00000042308	Setd1a	100	97.959	ENSODEG00000014550	-	100	96.356	Octodon_degus
ENSMUSG00000042308	Setd1a	100	88.325	ENSOANG00000013155	-	54	91.837	Ornithorhynchus_anatinus
ENSMUSG00000042308	Setd1a	100	97.959	ENSOCUG00000022182	-	53	93.189	Oryctolagus_cuniculus
ENSMUSG00000042308	Setd1a	99	81.026	ENSOGAG00000028006	-	100	63.170	Otolemur_garnettii
ENSMUSG00000042308	Setd1a	100	97.959	ENSOARG00000008207	-	64	82.146	Ovis_aries
ENSMUSG00000042308	Setd1a	100	98.469	ENSPPAG00000030470	-	98	95.876	Pan_paniscus
ENSMUSG00000042308	Setd1a	100	98.469	ENSPTIG00000010871	-	99	96.226	Panthera_tigris_altaica
ENSMUSG00000042308	Setd1a	100	79.188	ENSPSIG00000005027	-	56	57.723	Pelodiscus_sinensis
ENSMUSG00000042308	Setd1a	99	84.694	ENSPCIG00000016725	-	100	74.715	Phascolarctos_cinereus
ENSMUSG00000042308	Setd1a	100	71.717	ENSPFOG00000013669	setd1a	52	82.095	Poecilia_formosa
ENSMUSG00000042308	Setd1a	100	72.081	ENSPLAG00000009294	setd1a	55	82.095	Poecilia_latipinna
ENSMUSG00000042308	Setd1a	100	98.469	ENSPPYG00000007296	-	100	100.000	Pongo_abelii
ENSMUSG00000042308	Setd1a	78	97.449	ENSPCAG00000014351	-	85	97.449	Procavia_capensis
ENSMUSG00000042308	Setd1a	100	97.449	ENSPVAG00000011049	-	95	97.183	Pteropus_vampyrus
ENSMUSG00000042308	Setd1a	100	72.589	ENSPNYG00000014139	setd1a	52	81.757	Pundamilia_nyererei
ENSMUSG00000042308	Setd1a	100	98.469	ENSRBIG00000033047	-	100	95.563	Rhinopithecus_bieti
ENSMUSG00000042308	Setd1a	100	98.469	ENSRROG00000040062	-	99	95.876	Rhinopithecus_roxellana
ENSMUSG00000042308	Setd1a	99	85.204	ENSSHAG00000010784	-	100	76.548	Sarcophilus_harrisii
ENSMUSG00000042308	Setd1a	100	71.066	ENSSFOG00015007013	setd1a	51	81.333	Scleropages_formosus
ENSMUSG00000042308	Setd1a	79	87.267	ENSSARG00000005591	-	89	87.267	Sorex_araneus
ENSMUSG00000042308	Setd1a	81	96.517	ENSTBEG00000009714	-	70	100.000	Tupaia_belangeri
ENSMUSG00000042308	Setd1a	100	98.469	ENSUMAG00000013935	-	91	96.825	Ursus_maritimus
ENSMUSG00000042308	Setd1a	100	98.469	ENSVVUG00000027687	-	96	87.865	Vulpes_vulpes
ENSMUSG00000042308	Setd1a	98	67.358	ENSXETG00000001921	setd1a	50	79.412	Xenopus_tropicalis
ENSMUSG00000042308	Setd1a	100	72.081	ENSXCOG00000017585	setd1a	51	79.530	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	29490266.	IPI	Function
GO:0005634	nucleus	24550110.	IDA	Component
GO:0005634	nucleus	17500065.	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005719	nuclear euchromatin	22723415.	IDA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0008013	beta-catenin binding	-	ISO	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0010628	positive regulation of gene expression	27141965.	IMP	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0019827	stem cell population maintenance	24550110.	IMP	Process
GO:0032259	methylation	-	IEA	Process
GO:0035097	histone methyltransferase complex	17500065.	ISO	Component
GO:0035097	histone methyltransferase complex	22723415.	TAS	Component
GO:0042800	histone methyltransferase activity (H3-K4 specific)	-	ISO	Function
GO:0042800	histone methyltransferase activity (H3-K4 specific)	27141965.	NAS	Function
GO:0042800	histone methyltransferase activity (H3-K4 specific)	22723415.	TAS	Function
GO:0045646	regulation of erythrocyte differentiation	27141965.	IMP	Process
GO:0048096	chromatin-mediated maintenance of transcription	22723415.	NAS	Process
GO:0048188	Set1C/COMPASS complex	-	ISO	Component
GO:0048188	Set1C/COMPASS complex	27141965.	TAS	Component
GO:0051568	histone H3-K4 methylation	22723415.	IC	Process
GO:0051568	histone H3-K4 methylation	24550110.29490266.	IMP	Process
GO:0051568	histone H3-K4 methylation	27141965.	NAS	Process
GO:1902036	regulation of hematopoietic stem cell differentiation	-	ISO	Process
GO:1902275	regulation of chromatin organization	27141965.	IDA	Process
GO:1902275	regulation of chromatin organization	-	ISO	Process
GO:1990188	euchromatin binding	22723415.	IDA	Function
GO:2000179	positive regulation of neural precursor cell proliferation	24550110.	IMP	Process
GO:2000648	positive regulation of stem cell proliferation	24550110.	IMP	Process