EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000022471	-	5871	XM_006519427	ENSMUSP00000022471	1582 (aa)	XP_006519490	E9Q7L3
ENSMUST00000052239	-	5065	-	ENSMUSP00000060476	1582 (aa)	-	D3Z1W6
ENSMUST00000090214	-	6212	XM_006519410	ENSMUSP00000087682	1689 (aa)	XP_006519473	E9Q4Y5
ENSMUST00000112094	-	5154	XM_006519424	ENSMUSP00000107723	1602 (aa)	XP_006519487	Q8BSQ9
ENSMUST00000112095	-	7907	XM_006519423	ENSMUSP00000107724	1634 (aa)	XP_006519486	Q8BSQ9
ENSMUST00000112098	-	6566	XM_006519402	ENSMUSP00000107727	1704 (aa)	XP_006519465	F8VQD1
ENSMUST00000144009	-	434	-	ENSMUSP00000123518	84 (aa)	-	D3YYG4
ENSMUST00000136237	-	4971	-	ENSMUSP00000119722	860 (aa)	-	D6RI94
ENSMUST00000112106	-	485	-	ENSMUSP00000107734	91 (aa)	-	D3Z1M8
ENSMUST00000123678	-	4759	-	ENSMUSP00000120549	856 (aa)	-	D6RIL0
ENSMUST00000112092	-	5009	XM_006519418	ENSMUSP00000107721	1652 (aa)	XP_006519481	D3Z1N4
ENSMUST00000156628	-	4388	-	ENSMUSP00000123546	1460 (aa)	-	D3YYF2
ENSMUST00000146325	-	3137	-	ENSMUSP00000122805	931 (aa)	-	D3Z3R4
ENSMUST00000135704	-	3256	-	ENSMUSP00000115505	1085 (aa)	-	F6THL5
ENSMUST00000156407	-	817	-	-	- (aa)	-	-
ENSMUST00000022474	-	4843	XM_006519425	ENSMUSP00000022474	1597 (aa)	XP_006519488	E9Q7L2
ENSMUST00000145497	-	871	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042323	Pbrm1	100	100.000	ENSG00000163939	PBRM1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000776	kinetochore	14519686.	IDA	Component
GO:0001825	blastocyst formation	27869233.	IMP	Process
GO:0001890	placenta development	15601824.	IMP	Process
GO:0001974	blood vessel remodeling	20299672.	TAS	Process
GO:0003007	heart morphogenesis	20299672.	TAS	Process
GO:0003349	epicardium-derived cardiac endothelial cell differentiation	20299672.	TAS	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0003682	chromatin binding	15601824.	IDA	Function
GO:0005515	protein binding	17640523.	IPI	Function
GO:0005634	nucleus	15601824.	IC	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006337	nucleosome disassembly	21873635.	IBA	Process
GO:0006338	chromatin remodeling	-	IEA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0007507	heart development	15601824.	IMP	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0015616	DNA translocase activity	21873635.	IBA	Function
GO:0016586	RSC-type complex	21873635.	IBA	Component
GO:0043044	ATP-dependent chromatin remodeling	21873635.	IBA	Process
GO:0045893	positive regulation of transcription, DNA-templated	20299672.	TAS	Process
GO:0060948	cardiac vascular smooth muscle cell development	20299672.	TAS	Process
GO:0060979	vasculogenesis involved in coronary vascular morphogenesis	20299672.	TAS	Process