EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000042354 (Gene tree)
Gene ID
30877
Gene Symbol
Gnl3
Alias
NS|nucleostemin
Full Name
guanine nucleotide binding protein-like 3 (nucleolar)
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
6720 bases
Position
chr14:31012433-31019152
Accession
1353651
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000154745GN3L_Grn1PF08701.113.6e-2211
ENSMUSP00000047119GN3L_Grn1PF08701.114.2e-2111
ENSMUSP00000047119MMR_HSR1PF01926.235.1e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000227869-1033--- (aa)--
ENSMUST00000226740-1765-ENSMUSP00000154477136 (aa)-A0A2I3BR82
ENSMUST00000227087-466--- (aa)--
ENSMUST00000228713-718--- (aa)--
ENSMUST00000228774-2264--- (aa)--
ENSMUST00000228427-1360--- (aa)--
ENSMUST00000037739-1947-ENSMUSP00000047119538 (aa)-Q8CI11
ENSMUST00000227467-494-ENSMUSP00000154745146 (aa)-A0A2I3BRV9
ENSMUST00000228739-693--- (aa)--
ENSMUST00000226379-597-ENSMUSP00000154428159 (aa)-A0A2I3BR32
ENSMUST00000227389-1656--- (aa)--
ENSMUST00000228341-516-ENSMUSP00000153981156 (aa)-A0A2I3BPZ6
ENSMUST00000227170-666--- (aa)--
ENSMUST00000226220-508--- (aa)--
Gene Model
Click here to download ENSMUSG00000042354's gene model file
Pathways
Pathway IDPathway NameSource
mmu03008Ribosome biogenesis in eukaryotesKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042354's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000042354Gnl38635.659ENSMUSG00000025266Gnl3l7538.303
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000042354Gnl310083.108ENSG00000163938GNL39988.421Homo_sapiens
ENSMUSG00000042354Gnl310054.839ENSAPOG00000004048gnl39945.811Acanthochromis_polyacanthus
ENSMUSG00000042354Gnl310083.784ENSAMEG00000008456GNL310070.727Ailuropoda_melanoleuca
ENSMUSG00000042354Gnl310053.741ENSACIG00000000545gnl39942.959Amphilophus_citrinellus
ENSMUSG00000042354Gnl310053.459ENSAOCG00000012879gnl39945.161Amphiprion_ocellaris
ENSMUSG00000042354Gnl310054.667ENSAPEG00000006146gnl39945.341Amphiprion_percula
ENSMUSG00000042354Gnl310056.604ENSATEG00000024242gnl39945.534Anabas_testudineus
ENSMUSG00000042354Gnl39261.151ENSAPLG00000005171GNL310045.926Anas_platyrhynchos
ENSMUSG00000042354Gnl310064.901ENSACAG00000007357GNL310051.180Anolis_carolinensis
ENSMUSG00000042354Gnl39983.212ENSANAG00000033209GNL310072.192Aotus_nancymaae
ENSMUSG00000042354Gnl310053.061ENSACLG00000007381gnl39944.565Astatotilapia_calliptera
ENSMUSG00000042354Gnl310056.863ENSAMXG00000020880gnl310042.705Astyanax_mexicanus
ENSMUSG00000042354Gnl310082.993ENSBTAG00000014549GNL310071.115Bos_taurus
ENSMUSG00000042354Gnl310081.757ENSCJAG00000044256-10071.087Callithrix_jacchus
ENSMUSG00000042354Gnl310081.757ENSCJAG00000006864-10070.902Callithrix_jacchus
ENSMUSG00000042354Gnl310084.459ENSCAFG00000009004GNL310070.727Canis_familiaris
ENSMUSG00000042354Gnl310084.459ENSCAFG00020002613GNL310072.084Canis_lupus_dingo
ENSMUSG00000042354Gnl310084.932ENSCHIG00000022181GNL310071.978Capra_hircus
ENSMUSG00000042354Gnl310080.405ENSTSYG00000006851GNL310072.059Carlito_syrichta
ENSMUSG00000042354Gnl310083.562ENSCPOG00000000282GNL310069.444Cavia_porcellus
ENSMUSG00000042354Gnl310081.081ENSCCAG00000033281GNL310071.507Cebus_capucinus
ENSMUSG00000042354Gnl310082.432ENSCATG00000040886GNL310071.220Cercocebus_atys
ENSMUSG00000042354Gnl310081.507ENSCLAG00000010109-10072.844Chinchilla_lanigera
ENSMUSG00000042354Gnl310083.108ENSCSAG00000013315GNL310072.000Chlorocebus_sabaeus
ENSMUSG00000042354Gnl310079.730ENSCHOG00000002726GNL310067.921Choloepus_hoffmanni
ENSMUSG00000042354Gnl37577.451ENSCPBG00000018328-8677.451Chrysemys_picta_bellii
ENSMUSG00000042354Gnl37546.136ENSCPBG00000018330-9547.332Chrysemys_picta_bellii
ENSMUSG00000042354Gnl310083.108ENSCANG00000039969GNL310070.391Colobus_angolensis_palliatus
ENSMUSG00000042354Gnl310092.466ENSCGRG00001020950Gnl310082.528Cricetulus_griseus_chok1gshd
ENSMUSG00000042354Gnl310092.466ENSCGRG00000015225Gnl310082.528Cricetulus_griseus_crigri
ENSMUSG00000042354Gnl310055.405ENSCSEG00000005009gnl39843.657Cynoglossus_semilaevis
ENSMUSG00000042354Gnl310055.195ENSCVAG00000010679gnl39941.459Cyprinodon_variegatus
ENSMUSG00000042354Gnl310054.000ENSDARG00000006219gnl310042.781Danio_rerio
ENSMUSG00000042354Gnl310081.757ENSDNOG00000001037GNL310071.869Dasypus_novemcinctus
ENSMUSG00000042354Gnl310080.137ENSDORG00000000674Gnl310072.727Dipodomys_ordii
ENSMUSG00000042354Gnl38897.143ENSETEG00000016534-8797.015Echinops_telfairi
ENSMUSG00000042354Gnl310084.459ENSEASG00005014636GNL310072.051Equus_asinus_asinus
ENSMUSG00000042354Gnl310084.459ENSECAG00000014850GNL310072.678Equus_caballus
ENSMUSG00000042354Gnl310080.822ENSEEUG00000004427GNL310065.498Erinaceus_europaeus
ENSMUSG00000042354Gnl310053.595ENSELUG00000008767gnl39943.950Esox_lucius
ENSMUSG00000042354Gnl310083.784ENSFCAG00000015719GNL310071.455Felis_catus
ENSMUSG00000042354Gnl310067.568ENSFALG00000008957GNL39948.995Ficedula_albicollis
ENSMUSG00000042354Gnl310085.616ENSFDAG00000020679GNL310073.284Fukomys_damarensis
ENSMUSG00000042354Gnl310054.375ENSFHEG00000020897gnl39942.179Fundulus_heteroclitus
ENSMUSG00000042354Gnl310049.324ENSGMOG00000001745gnl39939.652Gadus_morhua
ENSMUSG00000042354Gnl310070.470ENSGALG00000001613GNL310048.951Gallus_gallus
ENSMUSG00000042354Gnl310051.020ENSGAFG00000007184gnl39938.306Gambusia_affinis
ENSMUSG00000042354Gnl310052.703ENSGACG00000000309gnl39942.391Gasterosteus_aculeatus
ENSMUSG00000042354Gnl37577.451ENSGAGG00000021592-5377.451Gopherus_agassizii
ENSMUSG00000042354Gnl37846.925ENSGAGG00000021579-9747.856Gopherus_agassizii
ENSMUSG00000042354Gnl310082.432ENSGGOG00000011444GNL310071.585Gorilla_gorilla
ENSMUSG00000042354Gnl310054.667ENSHBUG00000001340gnl39944.265Haplochromis_burtoni
ENSMUSG00000042354Gnl310084.932ENSHGLG00000018299GNL39974.033Heterocephalus_glaber_female
ENSMUSG00000042354Gnl310084.559ENSHGLG00100017053-10084.559Heterocephalus_glaber_male
ENSMUSG00000042354Gnl310056.000ENSHCOG00000009446gnl39940.311Hippocampus_comes
ENSMUSG00000042354Gnl310057.792ENSIPUG00000023677gnl39943.486Ictalurus_punctatus
ENSMUSG00000042354Gnl310085.616ENSSTOG00000000356GNL310073.540Ictidomys_tridecemlineatus
ENSMUSG00000042354Gnl310087.671ENSJJAG00000021993Gnl310074.349Jaculus_jaculus
ENSMUSG00000042354Gnl310051.701ENSKMAG00000005965gnl39942.806Kryptolebias_marmoratus
ENSMUSG00000042354Gnl310054.305ENSLBEG00000011394gnl39943.705Labrus_bergylta
ENSMUSG00000042354Gnl310066.892ENSLACG00000001259GNL310048.854Latimeria_chalumnae
ENSMUSG00000042354Gnl310059.333ENSLOCG00000010542gnl39942.807Lepisosteus_oculatus
ENSMUSG00000042354Gnl310083.784ENSLAFG00000016056GNL310070.310Loxodonta_africana
ENSMUSG00000042354Gnl310082.432ENSMFAG00000000613GNL310070.856Macaca_fascicularis
ENSMUSG00000042354Gnl310082.432ENSMMUG00000012511GNL310070.019Macaca_mulatta
ENSMUSG00000042354Gnl310082.432ENSMNEG00000041979GNL310070.205Macaca_nemestrina
ENSMUSG00000042354Gnl310082.432ENSMLEG00000027696GNL310070.856Mandrillus_leucophaeus
ENSMUSG00000042354Gnl310053.378ENSMAMG00000008904gnl39943.363Mastacembelus_armatus
ENSMUSG00000042354Gnl310054.667ENSMZEG00005014857gnl39944.265Maylandia_zebra
ENSMUSG00000042354Gnl310054.730ENSMZEG00005014957-9942.065Maylandia_zebra
ENSMUSG00000042354Gnl39438.830ENSMGAG00000000848GNL39939.219Meleagris_gallopavo
ENSMUSG00000042354Gnl310089.726ENSMAUG00000020178Gnl310082.375Mesocricetus_auratus
ENSMUSG00000042354Gnl310084.459ENSMICG00000016373GNL310069.273Microcebus_murinus
ENSMUSG00000042354Gnl310090.411ENSMOCG00000018437Gnl310081.262Microtus_ochrogaster
ENSMUSG00000042354Gnl310053.896ENSMMOG00000002815gnl39941.877Mola_mola
ENSMUSG00000042354Gnl310069.737ENSMODG00000011257GNL310056.962Monodelphis_domestica
ENSMUSG00000042354Gnl310053.741ENSMALG00000021043gnl39938.606Monopterus_albus
ENSMUSG00000042354Gnl310099.315MGP_CAROLIEiJ_G0019063Gnl310097.955Mus_caroli
ENSMUSG00000042354Gnl310096.575MGP_PahariEiJ_G0030080Gnl310094.238Mus_pahari
ENSMUSG00000042354Gnl3100100.000MGP_SPRETEiJ_G0019948Gnl310097.584Mus_spretus
ENSMUSG00000042354Gnl310083.784ENSMPUG00000016777GNL310071.168Mustela_putorius_furo
ENSMUSG00000042354Gnl310085.616ENSMLUG00000000728GNL310073.616Myotis_lucifugus
ENSMUSG00000042354Gnl310089.116ENSNGAG00000017202Gnl310078.976Nannospalax_galili
ENSMUSG00000042354Gnl310054.667ENSNBRG00000013161gnl310042.460Neolamprologus_brichardi
ENSMUSG00000042354Gnl310083.108ENSNLEG00000007173GNL310071.403Nomascus_leucogenys
ENSMUSG00000042354Gnl39939.552ENSMEUG00000011502-8746.569Notamacropus_eugenii
ENSMUSG00000042354Gnl37962.818ENSOPRG00000009356GNL39862.818Ochotona_princeps
ENSMUSG00000042354Gnl310084.932ENSODEG00000009492GNL310072.560Octodon_degus
ENSMUSG00000042354Gnl310052.830ENSONIG00000019335gnl39944.544Oreochromis_niloticus
ENSMUSG00000042354Gnl310068.667ENSOANG00000013437GNL310052.398Ornithorhynchus_anatinus
ENSMUSG00000042354Gnl310079.730ENSOCUG00000009841GNL310069.945Oryctolagus_cuniculus
ENSMUSG00000042354Gnl310055.102ENSORLG00000016030gnl39945.208Oryzias_latipes
ENSMUSG00000042354Gnl310054.422ENSORLG00020014358gnl39945.242Oryzias_latipes_hni
ENSMUSG00000042354Gnl310055.102ENSORLG00015009489gnl39944.964Oryzias_latipes_hsok
ENSMUSG00000042354Gnl310051.592ENSOMEG00000005462gnl39943.841Oryzias_melastigma
ENSMUSG00000042354Gnl310084.459ENSOGAG00000004101GNL310072.662Otolemur_garnettii
ENSMUSG00000042354Gnl310085.714ENSOARG00000002470GNL310071.609Ovis_aries
ENSMUSG00000042354Gnl310082.432ENSPPAG00000019253GNL310071.403Pan_paniscus
ENSMUSG00000042354Gnl310083.108ENSPPRG00000009550GNL310072.080Panthera_pardus
ENSMUSG00000042354Gnl310083.108ENSPTIG00000009356GNL310071.898Panthera_tigris_altaica
ENSMUSG00000042354Gnl310082.432ENSPTRG00000015009GNL310071.403Pan_troglodytes
ENSMUSG00000042354Gnl310082.432ENSPANG00000016579GNL310067.942Papio_anubis
ENSMUSG00000042354Gnl310057.143ENSPKIG00000024295gnl39943.393Paramormyrops_kingsleyae
ENSMUSG00000042354Gnl310065.132ENSPSIG00000011486GNL310050.181Pelodiscus_sinensis
ENSMUSG00000042354Gnl310055.102ENSPMGG00000008210gnl39943.119Periophthalmus_magnuspinnatus
ENSMUSG00000042354Gnl310091.096ENSPEMG00000017577Gnl310082.222Peromyscus_maniculatus_bairdii
ENSMUSG00000042354Gnl310046.541ENSPMAG00000001073-10052.489Petromyzon_marinus
ENSMUSG00000042354Gnl310068.027ENSPCIG00000018642GNL39853.370Phascolarctos_cinereus
ENSMUSG00000042354Gnl310056.667ENSPFOG00000017601gnl39942.857Poecilia_formosa
ENSMUSG00000042354Gnl310056.667ENSPLAG00000016968gnl39944.665Poecilia_latipinna
ENSMUSG00000042354Gnl310054.305ENSPMEG00000018775gnl39943.486Poecilia_mexicana
ENSMUSG00000042354Gnl310053.378ENSPREG00000002909gnl38846.541Poecilia_reticulata
ENSMUSG00000042354Gnl310081.879ENSPPYG00000013800GNL310071.377Pongo_abelii
ENSMUSG00000042354Gnl310084.459ENSPCAG00000002006GNL38176.923Procavia_capensis
ENSMUSG00000042354Gnl310082.432ENSPCOG00000026637GNL310072.860Propithecus_coquereli
ENSMUSG00000042354Gnl310082.432ENSPVAG00000012586GNL310071.325Pteropus_vampyrus
ENSMUSG00000042354Gnl310053.333ENSPNYG00000005130gnl310044.272Pundamilia_nyererei
ENSMUSG00000042354Gnl310056.051ENSPNAG00000013096gnl310043.652Pygocentrus_nattereri
ENSMUSG00000042354Gnl310095.890ENSRNOG00000028461Gnl310089.219Rattus_norvegicus
ENSMUSG00000042354Gnl310082.432ENSRBIG00000031778GNL310070.674Rhinopithecus_bieti
ENSMUSG00000042354Gnl310082.432ENSRROG00000030086GNL310070.674Rhinopithecus_roxellana
ENSMUSG00000042354Gnl310082.432ENSSBOG00000019990GNL310072.192Saimiri_boliviensis_boliviensis
ENSMUSG00000042354Gnl310068.000ENSSHAG00000006141GNL39953.345Sarcophilus_harrisii
ENSMUSG00000042354Gnl310054.248ENSSFOG00015021228gnl39944.112Scleropages_formosus
ENSMUSG00000042354Gnl310052.830ENSSMAG00000006662gnl39943.345Scophthalmus_maximus
ENSMUSG00000042354Gnl310053.333ENSSDUG00000000972gnl39943.393Seriola_dumerili
ENSMUSG00000042354Gnl310053.333ENSSLDG00000008692gnl39242.883Seriola_lalandi_dorsalis
ENSMUSG00000042354Gnl310073.469ENSSARG00000002226GNL39570.000Sorex_araneus
ENSMUSG00000042354Gnl310067.114ENSSPUG00000003582GNL310051.155Sphenodon_punctatus
ENSMUSG00000042354Gnl310056.000ENSSPAG00000020180gnl39945.357Stegastes_partitus
ENSMUSG00000042354Gnl310083.673ENSSSCG00000011449GNL39971.115Sus_scrofa
ENSMUSG00000042354Gnl310064.516ENSTGUG00000005774GNL310049.094Taeniopygia_guttata
ENSMUSG00000042354Gnl310054.717ENSTRUG00000005552gnl39943.447Takifugu_rubripes
ENSMUSG00000042354Gnl310056.000ENSTNIG00000007263gnl39943.649Tetraodon_nigroviridis
ENSMUSG00000042354Gnl39779.021ENSTBEG00000017518GNL310066.792Tupaia_belangeri
ENSMUSG00000042354Gnl39580.769ENSTTRG00000008574-10066.667Tursiops_truncatus
ENSMUSG00000042354Gnl310083.784ENSUAMG00000012347GNL310070.909Ursus_americanus
ENSMUSG00000042354Gnl310083.784ENSUMAG00000021001GNL310071.091Ursus_maritimus
ENSMUSG00000042354Gnl37591.176ENSVPAG00000007379-5390.385Vicugna_pacos
ENSMUSG00000042354Gnl310083.108ENSVVUG00000024536-10081.884Vulpes_vulpes
ENSMUSG00000042354Gnl35985.000ENSVVUG00000003975-7985.000Vulpes_vulpes
ENSMUSG00000042354Gnl310057.047ENSXCOG00000018425gnl39646.341Xiphophorus_couchianus
ENSMUSG00000042354Gnl310057.333ENSXMAG00000022565gnl39944.123Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0005515protein binding17158916.IPIFunction
GO:0005525GTP binding17158916.IDAFunction
GO:0005525GTP binding-ISOFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm17158916.IDAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus12464630.17158916.IDAComponent
GO:0005730nucleolus-ISOComponent
GO:0008283cell proliferation-ISOProcess
GO:0016604nuclear body-ISOComponent
GO:0017145stem cell division-ISOProcess
GO:0019827stem cell population maintenance-ISOProcess
GO:0032206positive regulation of telomere maintenance-ISOProcess
GO:0033235positive regulation of protein sumoylation-ISOProcess
GO:0042127regulation of cell proliferation-ISOProcess
GO:0048027mRNA 5'-UTR binding-ISOFunction
GO:1902895positive regulation of pri-miRNA transcription by RNA polymerase II-ISOProcess
GO:1904816positive regulation of protein localization to chromosome, telomeric region-ISOProcess

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