EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000042390 (Gene tree)
Gene ID: 229542
Gene Symbol: Gatad2b
Alias: C430014D17Rik|p66beta
Full Name: GATA zinc finger domain containing 2B
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 70230
Position: chr3: 90293178-90363407
Accession: 2443225
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000196212	-	3125	-	-	- (aa)	-	-
ENSMUST00000049382	-	1906	-	ENSMUSP00000041370	594 (aa)	-	Q8VHR5
ENSMUST00000199607	-	2418	-	ENSMUSP00000142617	594 (aa)	-	Q8VHR5
ENSMUST00000206907	-	788	-	ENSMUSP00000145623	263 (aa)	-	A0A0U1RNM2
ENSMUST00000205797	-	2443	-	-	- (aa)	-	-
ENSMUST00000199754	-	7438	XM_006501359	ENSMUSP00000142514	594 (aa)	XP_006501422	Q8VHR5
ENSMUST00000200373	-	1937	-	-	- (aa)	-	-
ENSMUST00000197988	-	1815	-	ENSMUSP00000143085	578 (aa)	-	A1L3S7

Gene Model

Click here to download ENSMUSG00000042390's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042390's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042390	Gatad2b	100	98.443	ENSG00000143614	GATAD2B	100	100.000	Homo_sapiens
ENSMUSG00000042390	Gatad2b	99	38.720	ENSMUSG00000036180	Gatad2a	99	39.450	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0005515	protein binding	19321449.21931736.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016581	NuRD complex	21873635.	IBA	Component
GO:0043565	sequence-specific DNA binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function