EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000042426 (Gene tree)
Gene ID: 218629
Gene Symbol: Dhx29
Alias: E130202M19Rik
Full Name: DEAH (Asp-Glu-Ala-His) box polypeptide 29
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 41979 bases
Position: chr13:112927454-112969432
Accession: 2145374
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000035244	DEAD	PF00270.29	1.3e-09	1	1
ENSMUSP00000035244	HA2	PF04408.23	3.2e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000038574	-	4682	-	ENSMUSP00000035244	1365 (aa)	-	Q6PGC1
ENSMUST00000224176	-	1272	-	ENSMUSP00000153182	272 (aa)	-	Q8BN72
ENSMUST00000223866	-	1736	-	-	- (aa)	-	-
ENSMUST00000226022	-	497	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000042426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000042426	Dhx29	51	33.770	ENSMUSG00000027655	Dhx35	89	32.787
ENSMUSG00000042426	Dhx29	55	35.000	ENSMUSG00000032480	Dhx30	64	33.820
ENSMUSG00000042426	Dhx29	59	39.590	ENSMUSG00000035051	Dhx57	65	39.771
ENSMUSG00000042426	Dhx29	61	40.473	ENSMUSG00000027770	Dhx36	82	40.588
ENSMUSG00000042426	Dhx29	55	46.491	ENSMUSG00000034653	Ythdc2	89	32.714
ENSMUSG00000042426	Dhx29	52	41.294	ENSMUSG00000034931	Dhx8	53	41.294
ENSMUSG00000042426	Dhx29	65	31.655	ENSMUSG00000042699	Dhx9	58	32.593

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042426	Dhx29	100	90.730	ENSG00000067248	DHX29	100	90.803	Homo_sapiens
ENSMUSG00000042426	Dhx29	97	63.037	ENSAPOG00000007731	dhx29	99	63.394	Acanthochromis_polyacanthus
ENSMUSG00000042426	Dhx29	100	89.832	ENSAMEG00000013838	DHX29	100	89.685	Ailuropoda_melanoleuca
ENSMUSG00000042426	Dhx29	79	68.156	ENSACIG00000015064	dhx29	99	68.156	Amphilophus_citrinellus
ENSMUSG00000042426	Dhx29	99	61.378	ENSAOCG00000011810	dhx29	99	68.741	Amphiprion_ocellaris
ENSMUSG00000042426	Dhx29	97	62.509	ENSAPEG00000019407	dhx29	99	69.317	Amphiprion_percula
ENSMUSG00000042426	Dhx29	99	60.813	ENSATEG00000015041	dhx29	99	60.668	Anabas_testudineus
ENSMUSG00000042426	Dhx29	96	77.145	ENSAPLG00000009145	DHX29	99	77.145	Anas_platyrhynchos
ENSMUSG00000042426	Dhx29	96	76.847	ENSACAG00000015328	DHX29	99	75.435	Anolis_carolinensis
ENSMUSG00000042426	Dhx29	100	90.936	ENSANAG00000005482	DHX29	100	91.082	Aotus_nancymaae
ENSMUSG00000042426	Dhx29	99	61.963	ENSACLG00000001805	dhx29	99	62.482	Astatotilapia_calliptera
ENSMUSG00000042426	Dhx29	89	64.198	ENSAMXG00000018788	dhx29	99	57.831	Astyanax_mexicanus
ENSMUSG00000042426	Dhx29	100	89.839	ENSBTAG00000010510	DHX29	99	89.839	Bos_taurus
ENSMUSG00000042426	Dhx29	100	90.497	ENSCJAG00000001692	DHX29	100	90.716	Callithrix_jacchus
ENSMUSG00000042426	Dhx29	100	90.936	ENSCAFG00000006710	DHX29	100	90.591	Canis_familiaris
ENSMUSG00000042426	Dhx29	100	90.936	ENSCAFG00020024395	DHX29	99	92.877	Canis_lupus_dingo
ENSMUSG00000042426	Dhx29	99	89.824	ENSCHIG00000013568	-	100	89.824	Capra_hircus
ENSMUSG00000042426	Dhx29	99	90.117	ENSTSYG00000003651	DHX29	100	90.264	Carlito_syrichta
ENSMUSG00000042426	Dhx29	72	87.719	ENSCAPG00000014688	DHX29	99	87.719	Cavia_aperea
ENSMUSG00000042426	Dhx29	100	87.125	ENSCPOG00000040097	DHX29	99	87.491	Cavia_porcellus
ENSMUSG00000042426	Dhx29	100	91.009	ENSCCAG00000026726	DHX29	100	91.155	Cebus_capucinus
ENSMUSG00000042426	Dhx29	100	90.424	ENSCATG00000036778	DHX29	100	90.570	Cercocebus_atys
ENSMUSG00000042426	Dhx29	100	90.058	ENSCLAG00000007178	DHX29	99	90.205	Chinchilla_lanigera
ENSMUSG00000042426	Dhx29	100	90.285	ENSCSAG00000016510	DHX29	100	90.431	Chlorocebus_sabaeus
ENSMUSG00000042426	Dhx29	97	78.916	ENSCPBG00000026552	DHX29	100	77.582	Chrysemys_picta_bellii
ENSMUSG00000042426	Dhx29	100	90.570	ENSCANG00000031806	DHX29	100	90.716	Colobus_angolensis_palliatus
ENSMUSG00000042426	Dhx29	100	93.791	ENSCGRG00001002444	Dhx29	100	93.937	Cricetulus_griseus_chok1gshd
ENSMUSG00000042426	Dhx29	100	93.791	ENSCGRG00000005333	DHX29	100	93.937	Cricetulus_griseus_crigri
ENSMUSG00000042426	Dhx29	93	61.171	ENSCSEG00000018670	dhx29	94	61.171	Cynoglossus_semilaevis
ENSMUSG00000042426	Dhx29	99	60.467	ENSCVAG00000004486	dhx29	99	68.531	Cyprinodon_variegatus
ENSMUSG00000042426	Dhx29	99	61.970	ENSDARG00000040326	dhx29	99	61.898	Danio_rerio
ENSMUSG00000042426	Dhx29	96	84.451	ENSDNOG00000015364	DHX29	99	84.070	Dasypus_novemcinctus
ENSMUSG00000042426	Dhx29	86	87.556	ENSDORG00000006778	Dhx29	100	87.556	Dipodomys_ordii
ENSMUSG00000042426	Dhx29	79	97.778	ENSETEG00000000721	DHX29	79	97.778	Echinops_telfairi
ENSMUSG00000042426	Dhx29	100	91.594	ENSEASG00005013287	DHX29	99	91.594	Equus_asinus_asinus
ENSMUSG00000042426	Dhx29	100	91.740	ENSECAG00000024365	DHX29	99	92.125	Equus_caballus
ENSMUSG00000042426	Dhx29	79	93.989	ENSEEUG00000000507	DHX29	82	93.989	Erinaceus_europaeus
ENSMUSG00000042426	Dhx29	99	61.052	ENSELUG00000004969	dhx29	96	69.421	Esox_lucius
ENSMUSG00000042426	Dhx29	99	90.344	ENSFCAG00000008182	DHX29	99	90.344	Felis_catus
ENSMUSG00000042426	Dhx29	92	77.884	ENSFALG00000010826	DHX29	99	77.884	Ficedula_albicollis
ENSMUSG00000042426	Dhx29	100	89.839	ENSFDAG00000019507	DHX29	100	89.839	Fukomys_damarensis
ENSMUSG00000042426	Dhx29	99	60.600	ENSFHEG00000022875	DHX29	99	60.857	Fundulus_heteroclitus
ENSMUSG00000042426	Dhx29	98	61.527	ENSGMOG00000014621	dhx29	100	60.891	Gadus_morhua
ENSMUSG00000042426	Dhx29	99	75.744	ENSGALG00000014700	DHX29	99	76.107	Gallus_gallus
ENSMUSG00000042426	Dhx29	96	62.202	ENSGAFG00000012487	dhx29	99	68.347	Gambusia_affinis
ENSMUSG00000042426	Dhx29	97	61.357	ENSGACG00000016244	dhx29	100	60.745	Gasterosteus_aculeatus
ENSMUSG00000042426	Dhx29	97	78.496	ENSGAGG00000020049	DHX29	99	77.487	Gopherus_agassizii
ENSMUSG00000042426	Dhx29	100	90.438	ENSGGOG00000001862	DHX29	100	90.657	Gorilla_gorilla
ENSMUSG00000042426	Dhx29	99	61.915	ENSHBUG00000006356	dhx29	99	62.536	Haplochromis_burtoni
ENSMUSG00000042426	Dhx29	99	89.678	ENSHGLG00000015591	DHX29	100	90.044	Heterocephalus_glaber_female
ENSMUSG00000042426	Dhx29	99	89.751	ENSHGLG00100013079	DHX29	100	90.117	Heterocephalus_glaber_male
ENSMUSG00000042426	Dhx29	69	65.973	ENSHCOG00000019967	dhx29	97	66.077	Hippocampus_comes
ENSMUSG00000042426	Dhx29	95	63.053	ENSIPUG00000024354	dhx29	98	69.286	Ictalurus_punctatus
ENSMUSG00000042426	Dhx29	100	90.132	ENSSTOG00000010789	DHX29	99	90.132	Ictidomys_tridecemlineatus
ENSMUSG00000042426	Dhx29	100	89.570	ENSJJAG00000024034	Dhx29	100	89.716	Jaculus_jaculus
ENSMUSG00000042426	Dhx29	99	61.494	ENSKMAG00000012503	dhx29	99	61.063	Kryptolebias_marmoratus
ENSMUSG00000042426	Dhx29	79	68.994	ENSLBEG00000019477	dhx29	99	68.994	Labrus_bergylta
ENSMUSG00000042426	Dhx29	99	67.705	ENSLACG00000011195	DHX29	98	68.343	Latimeria_chalumnae
ENSMUSG00000042426	Dhx29	99	65.447	ENSLOCG00000010159	dhx29	99	64.808	Lepisosteus_oculatus
ENSMUSG00000042426	Dhx29	100	88.816	ENSLAFG00000010492	DHX29	100	88.816	Loxodonta_africana
ENSMUSG00000042426	Dhx29	100	90.351	ENSMFAG00000003740	DHX29	100	90.497	Macaca_fascicularis
ENSMUSG00000042426	Dhx29	100	90.351	ENSMMUG00000010376	DHX29	100	90.497	Macaca_mulatta
ENSMUSG00000042426	Dhx29	100	90.424	ENSMNEG00000027210	DHX29	100	90.570	Macaca_nemestrina
ENSMUSG00000042426	Dhx29	100	90.205	ENSMLEG00000032837	DHX29	100	90.351	Mandrillus_leucophaeus
ENSMUSG00000042426	Dhx29	97	61.859	ENSMAMG00000016839	dhx29	99	66.667	Mastacembelus_armatus
ENSMUSG00000042426	Dhx29	99	61.819	ENSMZEG00005000550	dhx29	93	69.231	Maylandia_zebra
ENSMUSG00000042426	Dhx29	96	62.861	ENSMGAG00000003948	DHX29	99	62.861	Meleagris_gallopavo
ENSMUSG00000042426	Dhx29	100	94.010	ENSMAUG00000009094	Dhx29	100	94.083	Mesocricetus_auratus
ENSMUSG00000042426	Dhx29	99	90.716	ENSMICG00000012740	DHX29	99	90.716	Microcebus_murinus
ENSMUSG00000042426	Dhx29	100	93.260	ENSMOCG00000010302	Dhx29	100	93.353	Microtus_ochrogaster
ENSMUSG00000042426	Dhx29	81	66.667	ENSMMOG00000002478	dhx29	99	66.667	Mola_mola
ENSMUSG00000042426	Dhx29	99	85.063	ENSMODG00000019487	DHX29	99	85.430	Monodelphis_domestica
ENSMUSG00000042426	Dhx29	96	62.946	ENSMALG00000003169	dhx29	99	62.919	Monopterus_albus
ENSMUSG00000042426	Dhx29	100	98.463	MGP_CAROLIEiJ_G0018897	Dhx29	100	98.463	Mus_caroli
ENSMUSG00000042426	Dhx29	100	97.584	MGP_PahariEiJ_G0015968	Dhx29	100	97.584	Mus_pahari
ENSMUSG00000042426	Dhx29	100	99.195	MGP_SPRETEiJ_G0019776	Dhx29	100	99.195	Mus_spretus
ENSMUSG00000042426	Dhx29	100	90.132	ENSMPUG00000007636	DHX29	99	90.132	Mustela_putorius_furo
ENSMUSG00000042426	Dhx29	100	88.816	ENSMLUG00000001130	DHX29	100	88.889	Myotis_lucifugus
ENSMUSG00000042426	Dhx29	100	91.155	ENSNGAG00000018322	Dhx29	100	91.447	Nannospalax_galili
ENSMUSG00000042426	Dhx29	85	69.231	ENSNBRG00000011405	dhx29	99	69.231	Neolamprologus_brichardi
ENSMUSG00000042426	Dhx29	100	90.438	ENSNLEG00000001232	DHX29	100	90.657	Nomascus_leucogenys
ENSMUSG00000042426	Dhx29	69	89.189	ENSMEUG00000006454	-	81	89.189	Notamacropus_eugenii
ENSMUSG00000042426	Dhx29	88	90.183	ENSOPRG00000007959	DHX29	92	90.183	Ochotona_princeps
ENSMUSG00000042426	Dhx29	99	85.525	ENSODEG00000017600	DHX29	98	86.040	Octodon_degus
ENSMUSG00000042426	Dhx29	96	63.766	ENSONIG00000007583	dhx29	99	62.356	Oreochromis_niloticus
ENSMUSG00000042426	Dhx29	92	85.226	ENSOANG00000004883	-	99	85.385	Ornithorhynchus_anatinus
ENSMUSG00000042426	Dhx29	100	90.856	ENSOCUG00000004454	DHX29	100	90.856	Oryctolagus_cuniculus
ENSMUSG00000042426	Dhx29	96	62.087	ENSORLG00000005364	dhx29	99	68.951	Oryzias_latipes
ENSMUSG00000042426	Dhx29	80	68.627	ENSORLG00020006421	dhx29	99	68.627	Oryzias_latipes_hni
ENSMUSG00000042426	Dhx29	96	61.787	ENSORLG00015013087	dhx29	99	68.671	Oryzias_latipes_hsok
ENSMUSG00000042426	Dhx29	100	60.458	ENSOMEG00000008943	dhx29	99	60.388	Oryzias_melastigma
ENSMUSG00000042426	Dhx29	99	89.759	ENSOGAG00000002880	DHX29	99	89.905	Otolemur_garnettii
ENSMUSG00000042426	Dhx29	100	88.824	ENSOARG00000007827	DHX29	99	88.824	Ovis_aries
ENSMUSG00000042426	Dhx29	100	90.320	ENSPPAG00000041713	DHX29	100	90.466	Pan_paniscus
ENSMUSG00000042426	Dhx29	99	90.636	ENSPPRG00000024000	DHX29	99	90.636	Panthera_pardus
ENSMUSG00000042426	Dhx29	99	90.710	ENSPTIG00000009977	DHX29	99	90.710	Panthera_tigris_altaica
ENSMUSG00000042426	Dhx29	100	90.379	ENSPTRG00000016875	DHX29	100	90.525	Pan_troglodytes
ENSMUSG00000042426	Dhx29	100	90.424	ENSPANG00000013603	DHX29	100	90.570	Papio_anubis
ENSMUSG00000042426	Dhx29	99	63.246	ENSPKIG00000020627	dhx29	99	63.946	Paramormyrops_kingsleyae
ENSMUSG00000042426	Dhx29	97	79.038	ENSPSIG00000011702	DHX29	99	77.560	Pelodiscus_sinensis
ENSMUSG00000042426	Dhx29	86	65.233	ENSPMGG00000002597	dhx29	100	65.233	Periophthalmus_magnuspinnatus
ENSMUSG00000042426	Dhx29	100	93.134	ENSPEMG00000004741	Dhx29	100	93.134	Peromyscus_maniculatus_bairdii
ENSMUSG00000042426	Dhx29	92	82.848	ENSPCIG00000024988	DHX29	96	89.246	Phascolarctos_cinereus
ENSMUSG00000042426	Dhx29	96	56.833	ENSPFOG00000012697	dhx29	99	56.794	Poecilia_formosa
ENSMUSG00000042426	Dhx29	66	71.818	ENSPLAG00000000725	dhx29	96	71.818	Poecilia_latipinna
ENSMUSG00000042426	Dhx29	69	71.818	ENSPMEG00000010486	dhx29	95	71.818	Poecilia_mexicana
ENSMUSG00000042426	Dhx29	99	60.014	ENSPREG00000003029	dhx29	99	60.745	Poecilia_reticulata
ENSMUSG00000042426	Dhx29	81	91.802	ENSPPYG00000015468	DHX29	100	91.982	Pongo_abelii
ENSMUSG00000042426	Dhx29	66	95.833	ENSPCAG00000012957	DHX29	68	95.833	Procavia_capensis
ENSMUSG00000042426	Dhx29	99	84.176	ENSPCOG00000021937	DHX29	99	84.093	Propithecus_coquereli
ENSMUSG00000042426	Dhx29	100	88.377	ENSPVAG00000002444	DHX29	99	88.377	Pteropus_vampyrus
ENSMUSG00000042426	Dhx29	94	62.974	ENSPNYG00000006076	dhx29	94	62.762	Pundamilia_nyererei
ENSMUSG00000042426	Dhx29	99	62.609	ENSPNAG00000008720	dhx29	99	62.682	Pygocentrus_nattereri
ENSMUSG00000042426	Dhx29	100	95.534	ENSRNOG00000010369	Dhx29	100	95.534	Rattus_norvegicus
ENSMUSG00000042426	Dhx29	100	90.643	ENSRBIG00000032473	DHX29	100	90.789	Rhinopithecus_bieti
ENSMUSG00000042426	Dhx29	100	90.643	ENSRROG00000044066	DHX29	100	90.789	Rhinopithecus_roxellana
ENSMUSG00000042426	Dhx29	100	90.936	ENSSBOG00000026450	DHX29	100	90.863	Saimiri_boliviensis_boliviensis
ENSMUSG00000042426	Dhx29	96	86.641	ENSSHAG00000003003	DHX29	98	86.565	Sarcophilus_harrisii
ENSMUSG00000042426	Dhx29	99	61.566	ENSSFOG00015014445	dhx29	93	64.496	Scleropages_formosus
ENSMUSG00000042426	Dhx29	97	62.270	ENSSMAG00000007649	dhx29	99	69.468	Scophthalmus_maximus
ENSMUSG00000042426	Dhx29	99	62.213	ENSSDUG00000023790	dhx29	99	70.028	Seriola_dumerili
ENSMUSG00000042426	Dhx29	99	62.086	ENSSLDG00000006175	dhx29	99	70.448	Seriola_lalandi_dorsalis
ENSMUSG00000042426	Dhx29	99	83.394	ENSSARG00000008364	DHX29	100	83.394	Sorex_araneus
ENSMUSG00000042426	Dhx29	98	75.581	ENSSPUG00000006458	DHX29	99	81.145	Sphenodon_punctatus
ENSMUSG00000042426	Dhx29	79	69.638	ENSSPAG00000011397	dhx29	99	69.916	Stegastes_partitus
ENSMUSG00000042426	Dhx29	94	64.356	ENSSPAG00000011500	dhx29	99	64.509	Stegastes_partitus
ENSMUSG00000042426	Dhx29	99	90.198	ENSSSCG00000016907	DHX29	99	92.308	Sus_scrofa
ENSMUSG00000042426	Dhx29	96	76.336	ENSTGUG00000002464	DHX29	99	76.336	Taeniopygia_guttata
ENSMUSG00000042426	Dhx29	98	62.209	ENSTRUG00000014726	dhx29	99	66.914	Takifugu_rubripes
ENSMUSG00000042426	Dhx29	96	63.767	ENSTNIG00000007548	dhx29	99	62.301	Tetraodon_nigroviridis
ENSMUSG00000042426	Dhx29	95	88.375	ENSTTRG00000008675	DHX29	95	88.375	Tursiops_truncatus
ENSMUSG00000042426	Dhx29	100	90.417	ENSUAMG00000023080	DHX29	99	92.727	Ursus_americanus
ENSMUSG00000042426	Dhx29	91	90.975	ENSUMAG00000009971	DHX29	99	90.975	Ursus_maritimus
ENSMUSG00000042426	Dhx29	99	89.898	ENSVPAG00000011173	DHX29	99	89.898	Vicugna_pacos
ENSMUSG00000042426	Dhx29	100	90.936	ENSVVUG00000021328	DHX29	99	90.936	Vulpes_vulpes
ENSMUSG00000042426	Dhx29	99	67.484	ENSXETG00000000367	dhx29	99	67.556	Xenopus_tropicalis
ENSMUSG00000042426	Dhx29	96	62.547	ENSXMAG00000004847	dhx29	99	61.720	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0006412	translation	-	IEA	Process
GO:0006413	translational initiation	-	IEA	Process
GO:0016282	eukaryotic 43S preinitiation complex	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0034459	ATP-dependent 3'-5' RNA helicase activity	21873635.	IBA	Function
GO:0043024	ribosomal small subunit binding	-	ISO	Function