EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000042557 (Gene tree)
Gene ID: 20466
Gene Symbol: Sin3a
Alias: Sin3|mSin3A
Full Name: transcriptional regulator%2C SIN3A (yeast)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 56327
Position: chr9: 57072040-57128366
Accession: 107157
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000169879	-	364	-	ENSMUSP00000129062	102 (aa)	-	E9Q2L1
ENSMUST00000165927	-	641	-	-	- (aa)	-	-
ENSMUST00000163400	-	544	-	ENSMUSP00000126718	133 (aa)	-	E9PXF9
ENSMUST00000167963	-	640	-	-	- (aa)	-	-
ENSMUST00000168678	-	5206	XM_017313231	ENSMUSP00000126601	1274 (aa)	XP_017168720	Q60520
ENSMUST00000049169	-	4845	-	ENSMUSP00000045044	1274 (aa)	-	Q60520
ENSMUST00000168177	-	5086	XM_006510890	ENSMUSP00000130221	1277 (aa)	XP_006510953	Q60520
ENSMUST00000167715	-	4961	-	ENSMUSP00000130641	1274 (aa)	-	Q60520
ENSMUST00000168502	-	4899	XM_006510891	ENSMUSP00000128956	1277 (aa)	XP_006510954	Q60520

Gene Model

Click here to download ENSMUSG00000042557's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04919	Thyroid hormone signaling pathway	KEGG
mmu05016	Huntington disease	KEGG
mmu05169	Epstein-Barr virus infection	KEGG
mmu05202	Transcriptional misregulation in cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042557's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042557	Sin3a	100	98.038	ENSG00000169375	SIN3A	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	7889570.10431247.12649481.	IGI	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000776	kinetochore	14519686.	IDA	Component
GO:0000785	chromatin	21873635.	IBA	Component
GO:0000785	chromatin	-	ISO	Component
GO:0000976	transcription regulatory region sequence-specific DNA binding	21680841.	IDA	Function
GO:0001102	RNA polymerase II activating transcription factor binding	-	ISO	Function
GO:0001103	RNA polymerase II repressing transcription factor binding	19235719.	IPI	Function
GO:0001701	in utero embryonic development	15998811.	IMP	Process
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0002230	positive regulation of defense response to virus by host	-	ISO	Process
GO:0002244	hematopoietic progenitor cell differentiation	24029230.	IMP	Process
GO:0003677	DNA binding	14593184.15998811.	IDA	Function
GO:0003682	chromatin binding	17074803.18212064.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	15998811.	IMP	Function
GO:0003714	transcription corepressor activity	21873635.	IBA	Function
GO:0003714	transcription corepressor activity	7889570.10734093.	IDA	Function
GO:0003714	transcription corepressor activity	10734093.	IGI	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0004407	histone deacetylase activity	21873635.	IBA	Function
GO:0005515	protein binding	7889570.8521822.8649810.9702189.10640276.10734093.11101889.11390640.11486045.11882901.11909966.12198165.12527908.15489224.15696166.16103876.16227606.16449650.16805913.17670746.19139101.19144721.19424149.20404188.21448134.21454521.21490601.21680841.23770565.24240174.28554894.	IPI	Function
GO:0005634	nucleus	8649810.10734093.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	17182846.	IPI	Component
GO:0006260	DNA replication	15998811.	IMP	Process
GO:0006355	regulation of transcription, DNA-templated	15998811.	IMP	Process
GO:0006476	protein deacetylation	-	ISO	Process
GO:0007568	aging	-	ISO	Process
GO:0008134	transcription factor binding	14593184.15767674.	IPI	Function
GO:0010243	response to organonitrogen compound	-	ISO	Process
GO:0010817	regulation of hormone levels	-	ISO	Process
GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	15998811.	IMP	Process
GO:0016575	histone deacetylation	21873635.	IBA	Process
GO:0016580	Sin3 complex	21873635.	IBA	Component
GO:0016580	Sin3 complex	-	ISO	Component
GO:0017053	transcriptional repressor complex	10734093.	IDA	Component
GO:0017053	transcriptional repressor complex	17182846.	IPI	Component
GO:0031937	positive regulation of chromatin silencing	-	ISO	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033558	protein deacetylase activity	-	ISO	Function
GO:0034613	cellular protein localization	15998811.	IMP	Process
GO:0042754	negative regulation of circadian rhythm	21680841.	IMP	Process
GO:0043066	negative regulation of apoptotic process	15998811.	IMP	Process
GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	-	ISO	Process
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	7889570.10734093.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048511	rhythmic process	-	IEA	Process
GO:0051595	response to methylglyoxal	17670746.	IDA	Process
GO:0071333	cellular response to glucose stimulus	17670746.	IDA	Process
GO:1900181	negative regulation of protein localization to nucleus	-	ISO	Process
GO:1901675	negative regulation of histone H3-K27 acetylation	-	ISO	Process
GO:2000678	negative regulation of transcription regulatory region DNA binding	-	ISO	Process