EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000042605 (Gene tree)
Gene ID
20239
Gene Symbol
Atxn2
Alias
9630045M23Rik|ATX2|Sca2
Full Name
ataxin 2
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
105157 bases
Position
chr5:121711337-121816493
Accession
1277223
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000124070PAM2PF07145.151.1e-0611
ENSMUSP00000056715PAM2PF07145.152.3e-0611
ENSMUSP00000123784PAM2PF07145.152.4e-0611
ENSMUSP00000153566LsmADPF06741.134.6e-1611
ENSMUSP00000124070LsmADPF06741.131e-1511
ENSMUSP00000056715LsmADPF06741.131.8e-1511
ENSMUSP00000125647LsmADPF06741.133.1e-0711
ENSMUSP00000153566SM-ATXPF14438.62.3e-2111
ENSMUSP00000056715SM-ATXPF14438.61e-2011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000161872-755--- (aa)--
ENSMUST00000199451-6946--- (aa)--
ENSMUST00000200499-3131--- (aa)--
ENSMUST00000199864-412-ENSMUSP0000014298464 (aa)-A0A0G2JF15
ENSMUST00000161159-891-ENSMUSP00000123833234 (aa)-F6UTV7
ENSMUST00000160093-240--- (aa)--
ENSMUST00000162459-754--- (aa)--
ENSMUST00000160462-397-ENSMUSP0000012409265 (aa)-F6U209
ENSMUST00000162611-461--- (aa)--
ENSMUST00000159928-1468--- (aa)--
ENSMUST00000162327-2343-ENSMUSP00000123784662 (aa)-F6V8M6
ENSMUST00000161433-578--- (aa)--
ENSMUST00000159828-1003--- (aa)--
ENSMUST00000051950-4472XM_006530228ENSMUSP000000567151286 (aa)XP_006530291E9QM77
ENSMUST00000225761-1434-ENSMUSP00000153566402 (aa)-A0A286YDU2
ENSMUST00000160813-497--- (aa)--
ENSMUST00000161064-3294-ENSMUSP00000124070929 (aa)-F6U2C2
ENSMUST00000160821-990-ENSMUSP00000125647330 (aa)-F7B6X4
ENSMUST00000160220-388-ENSMUSP0000012405996 (aa)-F6U2Q5
ENSMUST00000161836-482--- (aa)--
Gene Model
Click here to download ENSMUSG00000042605's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042605's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000042605Atxn28452.841ENSMUSG00000032637Atxn2l8055.682
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000042605Atxn210093.958ENSG00000204842ATXN29797.136Homo_sapiens
ENSMUSG00000042605Atxn29756.481ENSAPOG00000014663atxn29669.625Acanthochromis_polyacanthus
ENSMUSG00000042605Atxn210091.349ENSAMEG00000013747ATXN29994.019Ailuropoda_melanoleuca
ENSMUSG00000042605Atxn27971.698ENSACIG00000004928atxn210055.853Amphilophus_citrinellus
ENSMUSG00000042605Atxn29756.481ENSAOCG00000001107atxn29667.857Amphiprion_ocellaris
ENSMUSG00000042605Atxn29756.481ENSAPEG00000020250atxn29668.977Amphiprion_percula
ENSMUSG00000042605Atxn27971.698ENSATEG00000018587atxn210055.975Anabas_testudineus
ENSMUSG00000042605Atxn210083.578ENSAPLG00000008724ATXN29986.461Anas_platyrhynchos
ENSMUSG00000042605Atxn29976.471ENSACAG00000002419ATXN29981.058Anolis_carolinensis
ENSMUSG00000042605Atxn210093.807ENSANAG00000022522ATXN210091.736Aotus_nancymaae
ENSMUSG00000042605Atxn29656.034ENSACLG00000013359atxn29757.610Astatotilapia_calliptera
ENSMUSG00000042605Atxn29068.468ENSAMXG00000002342atxn28968.285Astyanax_mexicanus
ENSMUSG00000042605Atxn210093.958ENSBTAG00000022069ATXN210093.916Bos_taurus
ENSMUSG00000042605Atxn210093.807ENSCJAG00000011756ATXN210089.829Callithrix_jacchus
ENSMUSG00000042605Atxn210090.162ENSCAFG00000008606ATXN210087.072Canis_familiaris
ENSMUSG00000042605Atxn210091.029ENSCAFG00020017041ATXN210094.011Canis_lupus_dingo
ENSMUSG00000042605Atxn210090.616ENSCHIG00000012141ATXN210086.830Capra_hircus
ENSMUSG00000042605Atxn210093.807ENSTSYG00000002717ATXN29993.798Carlito_syrichta
ENSMUSG00000042605Atxn210088.369ENSCAPG00000013332ATXN210088.218Cavia_aperea
ENSMUSG00000042605Atxn210093.011ENSCPOG00000001390ATXN210092.796Cavia_porcellus
ENSMUSG00000042605Atxn210093.807ENSCCAG00000026267ATXN29993.798Cebus_capucinus
ENSMUSG00000042605Atxn210093.656ENSCATG00000017877ATXN210089.924Cercocebus_atys
ENSMUSG00000042605Atxn210093.656ENSCLAG00000009324ATXN29893.651Chinchilla_lanigera
ENSMUSG00000042605Atxn210090.762ENSCSAG00000002590ATXN29393.838Chlorocebus_sabaeus
ENSMUSG00000042605Atxn28193.919ENSCHOG00000004284ATXN28689.067Choloepus_hoffmanni
ENSMUSG00000042605Atxn210084.164ENSCPBG00000003465ATXN210073.983Chrysemys_picta_bellii
ENSMUSG00000042605Atxn210093.505ENSCANG00000042302ATXN29994.118Colobus_angolensis_palliatus
ENSMUSG00000042605Atxn210093.842ENSCGRG00001022603Atxn210093.085Cricetulus_griseus_chok1gshd
ENSMUSG00000042605Atxn210096.559ENSCGRG00000015823Atxn29996.657Cricetulus_griseus_crigri
ENSMUSG00000042605Atxn29951.804ENSCSEG00000009072-9665.000Cynoglossus_semilaevis
ENSMUSG00000042605Atxn29851.127ENSCSEG00000018366atxn29667.577Cynoglossus_semilaevis
ENSMUSG00000042605Atxn29768.067ENSCVAG00000020160atxn29568.601Cyprinodon_variegatus
ENSMUSG00000042605Atxn29659.365ENSDARG00000052897atxn29660.740Danio_rerio
ENSMUSG00000042605Atxn210092.900ENSDNOG00000015696ATXN210091.167Dasypus_novemcinctus
ENSMUSG00000042605Atxn29982.153ENSDORG00000000808Atxn29983.817Dipodomys_ordii
ENSMUSG00000042605Atxn29186.508ENSETEG00000005224ATXN27793.254Echinops_telfairi
ENSMUSG00000042605Atxn26951.736ENSEBUG00000013060-9248.252Eptatretus_burgeri
ENSMUSG00000042605Atxn210092.473ENSEASG00005012077ATXN210093.482Equus_asinus_asinus
ENSMUSG00000042605Atxn29993.140ENSECAG00000014347ATXN29886.315Equus_caballus
ENSMUSG00000042605Atxn29189.076ENSEEUG00000014635-7391.419Erinaceus_europaeus
ENSMUSG00000042605Atxn29365.546ENSELUG00000019632atxn29564.452Esox_lucius
ENSMUSG00000042605Atxn210092.296ENSFCAG00000003178ATXN210090.114Felis_catus
ENSMUSG00000042605Atxn210087.009ENSFALG00000009001ATXN210083.286Ficedula_albicollis
ENSMUSG00000042605Atxn210092.366ENSFDAG00000020942ATXN210093.011Fukomys_damarensis
ENSMUSG00000042605Atxn29365.272ENSFHEG00000019561atxn29368.121Fundulus_heteroclitus
ENSMUSG00000042605Atxn28171.865ENSGMOG00000007412atxn29359.000Gadus_morhua
ENSMUSG00000042605Atxn210079.794ENSGALG00000004625ATXN29883.142Gallus_gallus
ENSMUSG00000042605Atxn29266.383ENSGAFG00000003302atxn29569.048Gambusia_affinis
ENSMUSG00000042605Atxn28171.865ENSGACG00000006295atxn210057.130Gasterosteus_aculeatus
ENSMUSG00000042605Atxn210086.707ENSGAGG00000005014ATXN210085.253Gopherus_agassizii
ENSMUSG00000042605Atxn29894.009ENSGGOG00000002137ATXN210094.011Gorilla_gorilla
ENSMUSG00000042605Atxn29458.147ENSHBUG00000002921atxn29668.214Haplochromis_burtoni
ENSMUSG00000042605Atxn210086.364ENSHGLG00000009812ATXN210084.077Heterocephalus_glaber_female
ENSMUSG00000042605Atxn210093.548ENSHGLG00100019351ATXN210093.226Heterocephalus_glaber_male
ENSMUSG00000042605Atxn29753.271ENSHCOG00000005278atxn29266.997Hippocampus_comes
ENSMUSG00000042605Atxn29458.654ENSIPUG00000016649atxn26453.070Ictalurus_punctatus
ENSMUSG00000042605Atxn210093.958ENSSTOG00000000978ATXN210093.763Ictidomys_tridecemlineatus
ENSMUSG00000042605Atxn29266.525ENSKMAG00000000980atxn29668.792Kryptolebias_marmoratus
ENSMUSG00000042605Atxn28853.311ENSLBEG00000017484atxn29453.146Labrus_bergylta
ENSMUSG00000042605Atxn27768.810ENSLBEG00000017537atxn26568.456Labrus_bergylta
ENSMUSG00000042605Atxn29969.896ENSLACG00000012531ATXN29974.170Latimeria_chalumnae
ENSMUSG00000042605Atxn29173.303ENSLOCG00000007880atxn29767.495Lepisosteus_oculatus
ENSMUSG00000042605Atxn210090.677ENSLAFG00000007416ATXN29993.197Loxodonta_africana
ENSMUSG00000042605Atxn210093.505ENSMFAG00000000374ATXN29993.580Macaca_fascicularis
ENSMUSG00000042605Atxn210093.505ENSMMUG00000002226ATXN210093.726Macaca_mulatta
ENSMUSG00000042605Atxn210093.505ENSMNEG00000035588ATXN210091.736Macaca_nemestrina
ENSMUSG00000042605Atxn210093.505ENSMLEG00000024324ATXN29993.838Mandrillus_leucophaeus
ENSMUSG00000042605Atxn29166.968ENSMAMG00000019160atxn29468.942Mastacembelus_armatus
ENSMUSG00000042605Atxn29458.147ENSMZEG00005008476atxn29568.792Maylandia_zebra
ENSMUSG00000042605Atxn210083.480ENSMGAG00000005288ATXN29986.300Meleagris_gallopavo
ENSMUSG00000042605Atxn210095.166ENSMAUG00000008223-10095.015Mesocricetus_auratus
ENSMUSG00000042605Atxn210094.411ENSMICG00000013541ATXN210094.392Microcebus_murinus
ENSMUSG00000042605Atxn210095.269ENSMOCG00000005219Atxn210095.161Microtus_ochrogaster
ENSMUSG00000042605Atxn29655.743ENSMMOG00000013189atxn29565.385Mola_mola
ENSMUSG00000042605Atxn210083.382ENSMODG00000012221ATXN28486.194Monodelphis_domestica
ENSMUSG00000042605Atxn29755.728ENSMALG00000018529atxn29569.388Monopterus_albus
ENSMUSG00000042605Atxn210098.759MGP_CAROLIEiJ_G0027692Atxn210098.683Mus_caroli
ENSMUSG00000042605Atxn210096.828MGP_PahariEiJ_G0024272Atxn210096.828Mus_pahari
ENSMUSG00000042605Atxn210099.397MGP_SPRETEiJ_G0028690Atxn210099.397Mus_spretus
ENSMUSG00000042605Atxn210089.736ENSMPUG00000002212ATXN29992.056Mustela_putorius_furo
ENSMUSG00000042605Atxn210088.710ENSMLUG00000015559ATXN29992.344Myotis_lucifugus
ENSMUSG00000042605Atxn29659.271ENSNBRG00000015794atxn29958.829Neolamprologus_brichardi
ENSMUSG00000042605Atxn210093.807ENSNLEG00000000484ATXN29993.906Nomascus_leucogenys
ENSMUSG00000042605Atxn28291.765ENSMEUG00000012244-8595.455Notamacropus_eugenii
ENSMUSG00000042605Atxn210088.106ENSOPRG00000014599ATXN210088.701Ochotona_princeps
ENSMUSG00000042605Atxn210089.312ENSODEG00000010798ATXN210092.783Octodon_degus
ENSMUSG00000042605Atxn28570.845ENSONIG00000014521atxn29857.819Oreochromis_niloticus
ENSMUSG00000042605Atxn210085.044ENSOANG00000004796ATXN210088.432Ornithorhynchus_anatinus
ENSMUSG00000042605Atxn210087.116ENSOCUG00000002855ATXN26991.884Oryctolagus_cuniculus
ENSMUSG00000042605Atxn29753.416ENSORLG00000003606atxn29564.348Oryzias_latipes
ENSMUSG00000042605Atxn29560.526ENSORLG00020000785atxn26551.433Oryzias_latipes_hni
ENSMUSG00000042605Atxn29753.416ENSORLG00015012345atxn26552.511Oryzias_latipes_hsok
ENSMUSG00000042605Atxn29364.730ENSOMEG00000020080atxn29568.456Oryzias_melastigma
ENSMUSG00000042605Atxn210091.176ENSOGAG00000000609ATXN210088.675Otolemur_garnettii
ENSMUSG00000042605Atxn210090.909ENSOARG00000018223ATXN29993.744Ovis_aries
ENSMUSG00000042605Atxn210093.807ENSPPAG00000028043ATXN210094.011Pan_paniscus
ENSMUSG00000042605Atxn210092.145ENSPPRG00000003573ATXN210090.019Panthera_pardus
ENSMUSG00000042605Atxn210092.296ENSPTIG00000021122ATXN210094.011Panthera_tigris_altaica
ENSMUSG00000042605Atxn210093.958ENSPTRG00000029540ATXN210094.106Pan_troglodytes
ENSMUSG00000042605Atxn210093.505ENSPANG00000017168ATXN29993.689Papio_anubis
ENSMUSG00000042605Atxn29661.148ENSPKIG00000023134atxn29661.453Paramormyrops_kingsleyae
ENSMUSG00000042605Atxn27178.125ENSPSIG00000008144-9281.852Pelodiscus_sinensis
ENSMUSG00000042605Atxn210082.551ENSPSIG00000002353-9985.528Pelodiscus_sinensis
ENSMUSG00000042605Atxn29653.586ENSPMGG00000005074atxn210055.596Periophthalmus_magnuspinnatus
ENSMUSG00000042605Atxn210096.344ENSPEMG00000015340Atxn210096.344Peromyscus_maniculatus_bairdii
ENSMUSG00000042605Atxn29436.044ENSPMAG00000004603atxn26852.453Petromyzon_marinus
ENSMUSG00000042605Atxn27254.762ENSPMAG00000007157atxn28754.762Petromyzon_marinus
ENSMUSG00000042605Atxn29979.635ENSPCIG00000006165-9981.922Phascolarctos_cinereus
ENSMUSG00000042605Atxn28564.638ENSPFOG00000005857atxn29552.269Poecilia_formosa
ENSMUSG00000042605Atxn29855.793ENSPLAG00000015241atxn29569.388Poecilia_latipinna
ENSMUSG00000042605Atxn29856.098ENSPMEG00000016681atxn29569.388Poecilia_mexicana
ENSMUSG00000042605Atxn29369.167ENSPREG00000014825atxn29568.227Poecilia_reticulata
ENSMUSG00000042605Atxn210091.029ENSPPYG00000004963ATXN29788.134Pongo_abelii
ENSMUSG00000042605Atxn266100.000ENSPCAG00000004216-62100.000Procavia_capensis
ENSMUSG00000042605Atxn210093.656ENSPCOG00000022031ATXN29993.580Propithecus_coquereli
ENSMUSG00000042605Atxn29990.756ENSPVAG00000013179ATXN29582.532Pteropus_vampyrus
ENSMUSG00000042605Atxn28851.089ENSPNYG00000016981atxn29651.342Pundamilia_nyererei
ENSMUSG00000042605Atxn28570.725ENSPNYG00000016952atxn28963.470Pundamilia_nyererei
ENSMUSG00000042605Atxn210054.806ENSPNAG00000010889atxn26656.160Pygocentrus_nattereri
ENSMUSG00000042605Atxn210094.126ENSRNOG00000001256Atxn29997.032Rattus_norvegicus
ENSMUSG00000042605Atxn210093.353ENSRBIG00000039212ATXN29993.689Rhinopithecus_bieti
ENSMUSG00000042605Atxn210093.353ENSRROG00000031170ATXN210091.736Rhinopithecus_roxellana
ENSMUSG00000042605Atxn210093.958ENSSBOG00000031563ATXN29993.798Saimiri_boliviensis_boliviensis
ENSMUSG00000042605Atxn210082.723ENSSHAG00000007304ATXN29986.220Sarcophilus_harrisii
ENSMUSG00000042605Atxn29763.866ENSSFOG00015017229atxn210060.804Scleropages_formosus
ENSMUSG00000042605Atxn29755.556ENSSMAG00000004627atxn210056.346Scophthalmus_maximus
ENSMUSG00000042605Atxn29267.965ENSSDUG00000001223atxn29670.307Seriola_dumerili
ENSMUSG00000042605Atxn29656.030ENSSLDG00000019837atxn210056.762Seriola_lalandi_dorsalis
ENSMUSG00000042605Atxn28894.631ENSSARG00000006291ATXN29488.115Sorex_araneus
ENSMUSG00000042605Atxn210083.971ENSSPUG00000010317ATXN29286.223Sphenodon_punctatus
ENSMUSG00000042605Atxn29768.067ENSSPAG00000000377atxn29469.625Stegastes_partitus
ENSMUSG00000042605Atxn210092.473ENSSSCG00000009834ATXN29492.904Sus_scrofa
ENSMUSG00000042605Atxn210084.265ENSTGUG00000006497ATXN29970.756Taeniopygia_guttata
ENSMUSG00000042605Atxn29266.216ENSTRUG00000016801atxn29566.221Takifugu_rubripes
ENSMUSG00000042605Atxn29689.466ENSTBEG00000001985ATXN28994.531Tupaia_belangeri
ENSMUSG00000042605Atxn28797.549ENSTTRG00000000952ATXN29297.549Tursiops_truncatus
ENSMUSG00000042605Atxn210091.471ENSUAMG00000025295ATXN29394.019Ursus_americanus
ENSMUSG00000042605Atxn29993.750ENSUMAG00000007315ATXN210094.106Ursus_maritimus
ENSMUSG00000042605Atxn29196.875ENSVPAG00000005940ATXN29496.875Vicugna_pacos
ENSMUSG00000042605Atxn210090.762ENSVVUG00000016107ATXN210093.916Vulpes_vulpes
ENSMUSG00000042605Atxn29973.676ENSXETG00000020912atxn210077.404Xenopus_tropicalis
ENSMUSG00000042605Atxn28855.319ENSXCOG00000010001atxn210056.158Xiphophorus_couchianus
ENSMUSG00000042605Atxn29265.957ENSXMAG00000003481atxn29568.707Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002091negative regulation of receptor internalization-ISOProcess
GO:0005154epidermal growth factor receptor binding-ISOFunction
GO:0005737cytoplasm10973246.IDAComponent
GO:0005737cytoplasm10973246.ISOComponent
GO:0005794Golgi apparatus-ISOComponent
GO:0005802trans-Golgi network-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005844polysome-ISOComponent
GO:0008022protein C-terminus binding-ISOFunction
GO:0010494cytoplasmic stress granule21873635.IBAComponent
GO:0010494cytoplasmic stress granule-ISOComponent
GO:0010603regulation of cytoplasmic mRNA processing body assembly21873635.IBAProcess
GO:0021702cerebellar Purkinje cell differentiation10973246.IMPProcess
GO:0033962cytoplasmic mRNA processing body assembly-ISOProcess
GO:0034063stress granule assembly21873635.IBAProcess
GO:0034063stress granule assembly-ISOProcess
GO:0040015negative regulation of multicellular organism growth16293225.IMPProcess
GO:0048471perinuclear region of cytoplasm9668173.11471052.IDAComponent
GO:0048471perinuclear region of cytoplasm-ISOComponent
GO:0048812neuron projection morphogenesis10973246.IMPProcess
GO:0048872homeostasis of number of cells10973246.IMPProcess
GO:0050692DBD domain binding9668173.IDAFunction
GO:0050905neuromuscular process10973246.IMPProcess
GO:1990904ribonucleoprotein complex-ISOComponent

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