EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000042625 (Gene tree)
Gene ID
224902
Gene Symbol
Safb2
Alias
-
Full Name
scaffold attachment factor B2
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
23621 bases
Position
chr17:56560965-56584585
Accession
2146808
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000074953RRM_1PF00076.228.2e-1311
ENSMUSP00000074953SAPPF02037.273.8e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000146958-842--- (aa)--
ENSMUST00000127947-632--- (aa)--
ENSMUST00000133604-1804-ENSMUSP00000119324179 (aa)-D6RJ78
ENSMUST00000131056-886-ENSMUSP00000120750295 (aa)-F6WIZ2
ENSMUST00000124457-684--- (aa)--
ENSMUST00000134497-572--- (aa)--
ENSMUST00000155983-1090-ENSMUSP00000116363214 (aa)-D6RHP9
ENSMUST00000140037-970--- (aa)--
ENSMUST00000146070-439--- (aa)--
ENSMUST00000144255-2523-ENSMUSP00000123673179 (aa)-D6RJ78
ENSMUST00000124111-2636-ENSMUSP0000012084583 (aa)-F6VRR0
ENSMUST00000134741-2107--- (aa)--
ENSMUST00000142940-1233-ENSMUSP00000123229248 (aa)-F6XJ79
ENSMUST00000075510-3277XM_006524156ENSMUSP00000074953991 (aa)XP_006524220Q80YR5
ENSMUST00000154991-870-ENSMUSP00000117696249 (aa)-F6Z0Y5
ENSMUST00000142752-438-ENSMUSP0000011914166 (aa)-F6R703
ENSMUST00000156640-552--- (aa)--
Gene Model
Click here to download ENSMUSG00000042625's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042625's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000042625Safb25539.000ENSMUSG00000032212Sltm8444.643
ENSMUSG00000042625Safb28950.625ENSMUSG00000071054Safb10062.038
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000042625Safb210069.353ENSG00000130254SAFB210069.552Homo_sapiens
ENSMUSG00000042625Safb210067.600ENSAMEG00000012146SAFB210068.800Ailuropoda_melanoleuca
ENSMUSG00000042625Safb210070.050ENSANAG00000031936SAFB210070.149Aotus_nancymaae
ENSMUSG00000042625Safb29967.508ENSBTAG00000001790SAFB29967.608Bos_taurus
ENSMUSG00000042625Safb210062.703ENSCJAG00000017205-9860.550Callithrix_jacchus
ENSMUSG00000042625Safb29970.181ENSCAFG00000018814SAFB29970.382Canis_familiaris
ENSMUSG00000042625Safb29970.181ENSCAFG00020018939SAFB29970.382Canis_lupus_dingo
ENSMUSG00000042625Safb29967.003ENSCHIG00000024547SAFB29967.104Capra_hircus
ENSMUSG00000042625Safb29455.907ENSCAPG00000011771SAFB210058.369Cavia_aperea
ENSMUSG00000042625Safb210068.348ENSCPOG00000011394SAFB210068.645Cavia_porcellus
ENSMUSG00000042625Safb210069.492ENSCCAG00000017348SAFB210069.591Cebus_capucinus
ENSMUSG00000042625Safb210068.725ENSCATG00000039497SAFB210068.924Cercocebus_atys
ENSMUSG00000042625Safb210069.453ENSCSAG00000009959SAFB210069.652Chlorocebus_sabaeus
ENSMUSG00000042625Safb27661.609ENSCHOG00000010684SAFB29961.346Choloepus_hoffmanni
ENSMUSG00000042625Safb210065.373ENSCANG00000024675SAFB210066.171Colobus_angolensis_palliatus
ENSMUSG00000042625Safb210084.677ENSCGRG00001015833Safb210084.677Cricetulus_griseus_chok1gshd
ENSMUSG00000042625Safb210084.677ENSCGRG00000011131Safb210084.677Cricetulus_griseus_crigri
ENSMUSG00000042625Safb210060.753ENSDNOG00000045791-9960.532Dasypus_novemcinctus
ENSMUSG00000042625Safb29564.161ENSDORG00000016199Safb210064.403Dipodomys_ordii
ENSMUSG00000042625Safb29859.551ENSETEG00000016756-5078.475Echinops_telfairi
ENSMUSG00000042625Safb29066.853ENSEASG00005022952SAFB29167.114Equus_asinus_asinus
ENSMUSG00000042625Safb29868.163ENSECAG00000018978SAFB210067.820Equus_caballus
ENSMUSG00000042625Safb29969.246ENSFCAG00000011834SAFB29969.950Felis_catus
ENSMUSG00000042625Safb29367.254ENSFDAG00000020009SAFB210067.066Fukomys_damarensis
ENSMUSG00000042625Safb29966.834ENSGGOG00000015093SAFB29967.465Gorilla_gorilla
ENSMUSG00000042625Safb210072.709ENSHGLG00000017442SAFB210072.709Heterocephalus_glaber_female
ENSMUSG00000042625Safb29966.064ENSLAFG00000003836SAFB210065.161Loxodonta_africana
ENSMUSG00000042625Safb210069.254ENSMFAG00000039706SAFB210069.453Macaca_fascicularis
ENSMUSG00000042625Safb210069.552ENSMMUG00000017968SAFB210069.751Macaca_mulatta
ENSMUSG00000042625Safb210063.988ENSMNEG00000032042SAFB210064.916Macaca_nemestrina
ENSMUSG00000042625Safb210069.453ENSMLEG00000034562SAFB210069.652Mandrillus_leucophaeus
ENSMUSG00000042625Safb29981.921ENSMAUG00000011573Safb29484.656Mesocricetus_auratus
ENSMUSG00000042625Safb210068.993ENSMICG00000008711SAFB29969.093Microcebus_murinus
ENSMUSG00000042625Safb210081.937ENSMOCG00000006827Safb210081.736Microtus_ochrogaster
ENSMUSG00000042625Safb29859.637ENSMODG00000001178SAFB29959.363Monodelphis_domestica
ENSMUSG00000042625Safb210098.690MGP_CAROLIEiJ_G0021779Safb210098.690Mus_caroli
ENSMUSG00000042625Safb210096.569MGP_PahariEiJ_G0020768Safb210096.569Mus_pahari
ENSMUSG00000042625Safb210099.533MGP_SPRETEiJ_G0022690Safb210099.533Mus_spretus
ENSMUSG00000042625Safb29970.423ENSMPUG00000006106SAFB29270.624Mustela_putorius_furo
ENSMUSG00000042625Safb29966.600ENSMLUG00000001050SAFB29965.503Myotis_lucifugus
ENSMUSG00000042625Safb210068.856ENSNLEG00000013514SAFB210069.055Nomascus_leucogenys
ENSMUSG00000042625Safb29455.804ENSMEUG00000002456SAFB210055.911Notamacropus_eugenii
ENSMUSG00000042625Safb210061.943ENSOPRG00000011523-10062.042Ochotona_princeps
ENSMUSG00000042625Safb210067.161ENSODEG00000014751SAFB210067.490Octodon_degus
ENSMUSG00000042625Safb29348.521ENSOANG00000011319-9742.945Ornithorhynchus_anatinus
ENSMUSG00000042625Safb25646.774ENSOCUG00000001592-9861.795Oryctolagus_cuniculus
ENSMUSG00000042625Safb210068.421ENSOGAG00000006855SAFB210068.520Otolemur_garnettii
ENSMUSG00000042625Safb29758.857ENSOARG00000007982SAFB26665.554Ovis_aries
ENSMUSG00000042625Safb210069.453ENSPPAG00000043392SAFB210069.652Pan_paniscus
ENSMUSG00000042625Safb29969.146ENSPPRG00000011310SAFB29969.849Panthera_pardus
ENSMUSG00000042625Safb28264.950ENSPTIG00000015120SAFB29067.110Panthera_tigris_altaica
ENSMUSG00000042625Safb210064.044ENSPTRG00000010334SAFB29674.809Pan_troglodytes
ENSMUSG00000042625Safb210069.353ENSPANG00000007004SAFB210069.552Papio_anubis
ENSMUSG00000042625Safb210082.683ENSPEMG00000016015Safb210081.882Peromyscus_maniculatus_bairdii
ENSMUSG00000042625Safb26166.941ENSPCIG00000009518-9970.718Phascolarctos_cinereus
ENSMUSG00000042625Safb210069.552ENSPPYG00000009427SAFB210069.652Pongo_abelii
ENSMUSG00000042625Safb210064.729ENSPCAG00000006352SAFB29965.331Procavia_capensis
ENSMUSG00000042625Safb29968.246ENSPCOG00000023260SAFB29968.246Propithecus_coquereli
ENSMUSG00000042625Safb210061.081ENSPVAG00000004902-7480.435Pteropus_vampyrus
ENSMUSG00000042625Safb29482.738ENSRNOG00000049511AABR07066522.110082.820Rattus_norvegicus
ENSMUSG00000042625Safb210062.703ENSRBIG00000033446SAFB210077.836Rhinopithecus_bieti
ENSMUSG00000042625Safb210069.552ENSRROG00000006606SAFB210069.751Rhinopithecus_roxellana
ENSMUSG00000042625Safb210068.756ENSSBOG00000032315SAFB210069.182Saimiri_boliviensis_boliviensis
ENSMUSG00000042625Safb29759.671ENSSHAG00000012703SAFB29959.054Sarcophilus_harrisii
ENSMUSG00000042625Safb28260.194ENSSARG00000000649SAFB210060.000Sorex_araneus
ENSMUSG00000042625Safb210068.887ENSSSCG00000013523SAFB210069.483Sus_scrofa
ENSMUSG00000042625Safb27860.348ENSTBEG00000012709SAFB28560.348Tupaia_belangeri
ENSMUSG00000042625Safb29463.898ENSTTRG00000013585SAFB29363.898Tursiops_truncatus
ENSMUSG00000042625Safb29970.863ENSUAMG00000024695SAFB29970.000Ursus_americanus
ENSMUSG00000042625Safb28566.086ENSUMAG00000009585SAFB28867.829Ursus_maritimus
ENSMUSG00000042625Safb27676.562ENSVPAG00000012041SAFB28976.562Vicugna_pacos
ENSMUSG00000042625Safb29970.382ENSVVUG00000013695SAFB29476.923Vulpes_vulpes
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0006357regulation of transcription by RNA polymerase II21873635.IBAProcess
GO:0016604nuclear body-ISOComponent
GO:0042802identical protein binding-ISOFunction
GO:0043231intracellular membrane-bounded organelle-ISOComponent
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0050684regulation of mRNA processing21873635.IBAProcess
GO:0060008Sertoli cell differentiation26092125.IMPProcess
GO:0060765regulation of androgen receptor signaling pathway21873635.IBAProcess
GO:0060765regulation of androgen receptor signaling pathway26092125.IDAProcess
GO:0060765regulation of androgen receptor signaling pathway26092125.IMPProcess

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