EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000042772 (Gene tree)
Gene ID: 226517
Gene Symbol: Smg7
Alias: 9430023P16Rik
Full Name: Smg-7 homolog%2C nonsense mediated mRNA decay factor (C. elegans)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 65652 bases
Position: chr1:152836995-152902646
Accession: 2682334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000073144	EST1	PF10374.9	7.5e-25	1	1
ENSMUSP00000107467	EST1	PF10374.9	7.6e-25	1	1
ENSMUSP00000041241	EST1	PF10374.9	7.6e-25	1	1
ENSMUSP00000073144	EST1_DNA_bind	PF10373.9	4.4e-55	1	1
ENSMUSP00000107467	EST1_DNA_bind	PF10373.9	4.4e-55	1	1
ENSMUSP00000041241	EST1_DNA_bind	PF10373.9	4.5e-55	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000043560	-	5792	XM_006529450	ENSMUSP00000041241	1146 (aa)	XP_006529513	Q5RJH6
ENSMUST00000186900	-	672	-	-	- (aa)	-	-
ENSMUST00000111836	-	3928	XM_006529451	ENSMUSP00000107467	1138 (aa)	XP_006529514	Q5RJH6
ENSMUST00000073441	-	5767	-	ENSMUSP00000073144	1134 (aa)	-	Q5RJH6
ENSMUST00000186692	-	574	-	-	- (aa)	-	-
ENSMUST00000188937	-	525	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000042772's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042772's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042772	Smg7	100	95.997	ENSG00000116698	SMG7	100	95.899	Homo_sapiens
ENSMUSG00000042772	Smg7	89	72.945	ENSAPOG00000009611	smg7	95	73.565	Acanthochromis_polyacanthus
ENSMUSG00000042772	Smg7	99	94.331	ENSAMEG00000002357	SMG7	99	94.508	Ailuropoda_melanoleuca
ENSMUSG00000042772	Smg7	97	63.669	ENSACIG00000015152	smg7	98	67.123	Amphilophus_citrinellus
ENSMUSG00000042772	Smg7	99	65.556	ENSAOCG00000013538	smg7	99	65.812	Amphiprion_ocellaris
ENSMUSG00000042772	Smg7	99	65.243	ENSAPEG00000007851	smg7	99	65.670	Amphiprion_percula
ENSMUSG00000042772	Smg7	99	65.025	ENSATEG00000006931	smg7	99	65.280	Anabas_testudineus
ENSMUSG00000042772	Smg7	100	87.314	ENSAPLG00000015811	SMG7	100	87.139	Anas_platyrhynchos
ENSMUSG00000042772	Smg7	100	83.876	ENSACAG00000014989	SMG7	100	84.127	Anolis_carolinensis
ENSMUSG00000042772	Smg7	100	94.635	ENSANAG00000028114	SMG7	100	94.635	Aotus_nancymaae
ENSMUSG00000042772	Smg7	99	64.516	ENSACLG00000022079	smg7	99	65.210	Astatotilapia_calliptera
ENSMUSG00000042772	Smg7	99	66.696	ENSAMXG00000020809	smg7	99	66.985	Astyanax_mexicanus
ENSMUSG00000042772	Smg7	100	94.778	ENSBTAG00000008003	SMG7	100	93.931	Bos_taurus
ENSMUSG00000042772	Smg7	100	95.561	ENSCJAG00000005135	SMG7	99	95.561	Callithrix_jacchus
ENSMUSG00000042772	Smg7	100	95.300	ENSCAFG00000013276	SMG7	98	95.474	Canis_familiaris
ENSMUSG00000042772	Smg7	100	95.300	ENSCAFG00020015475	SMG7	98	95.474	Canis_lupus_dingo
ENSMUSG00000042772	Smg7	99	94.616	ENSCHIG00000018192	SMG7	99	94.616	Capra_hircus
ENSMUSG00000042772	Smg7	100	95.126	ENSTSYG00000002667	SMG7	100	94.195	Carlito_syrichta
ENSMUSG00000042772	Smg7	100	95.561	ENSCPOG00000008906	SMG7	99	95.735	Cavia_porcellus
ENSMUSG00000042772	Smg7	100	94.723	ENSCCAG00000028596	SMG7	100	94.723	Cebus_capucinus
ENSMUSG00000042772	Smg7	100	96.171	ENSCATG00000011063	SMG7	100	95.075	Cercocebus_atys
ENSMUSG00000042772	Smg7	100	95.387	ENSCLAG00000010751	SMG7	100	95.387	Chinchilla_lanigera
ENSMUSG00000042772	Smg7	100	95.997	ENSCSAG00000012654	SMG7	98	95.997	Chlorocebus_sabaeus
ENSMUSG00000042772	Smg7	92	87.202	ENSCHOG00000010522	SMG7	93	87.488	Choloepus_hoffmanni
ENSMUSG00000042772	Smg7	100	89.746	ENSCPBG00000015724	SMG7	100	89.483	Chrysemys_picta_bellii
ENSMUSG00000042772	Smg7	99	94.947	ENSCANG00000015680	SMG7	99	94.947	Colobus_angolensis_palliatus
ENSMUSG00000042772	Smg7	100	98.171	ENSCGRG00001013705	Smg7	100	98.158	Cricetulus_griseus_chok1gshd
ENSMUSG00000042772	Smg7	100	98.171	ENSCGRG00000018401	Smg7	100	98.171	Cricetulus_griseus_crigri
ENSMUSG00000042772	Smg7	95	69.000	ENSCVAG00000011842	smg7	99	68.500	Cyprinodon_variegatus
ENSMUSG00000042772	Smg7	99	66.638	ENSDARG00000060767	smg7	99	66.724	Danio_rerio
ENSMUSG00000042772	Smg7	100	95.126	ENSDORG00000007331	Smg7	100	95.126	Dipodomys_ordii
ENSMUSG00000042772	Smg7	97	94.203	ENSETEG00000002654	SMG7	100	94.203	Echinops_telfairi
ENSMUSG00000042772	Smg7	100	96.144	ENSEASG00005006524	SMG7	100	96.144	Equus_asinus_asinus
ENSMUSG00000042772	Smg7	100	96.056	ENSECAG00000004313	SMG7	100	96.056	Equus_caballus
ENSMUSG00000042772	Smg7	97	94.208	ENSEEUG00000002024	SMG7	94	94.208	Erinaceus_europaeus
ENSMUSG00000042772	Smg7	92	72.614	ENSELUG00000010293	smg7	99	65.340	Esox_lucius
ENSMUSG00000042772	Smg7	100	95.706	ENSFCAG00000010900	SMG7	100	95.881	Felis_catus
ENSMUSG00000042772	Smg7	98	82.483	ENSFALG00000003047	SMG7	100	82.398	Ficedula_albicollis
ENSMUSG00000042772	Smg7	99	95.518	ENSFDAG00000012121	SMG7	99	95.986	Fukomys_damarensis
ENSMUSG00000042772	Smg7	99	64.096	ENSFHEG00000011073	smg7	99	63.551	Fundulus_heteroclitus
ENSMUSG00000042772	Smg7	96	56.178	ENSGMOG00000004916	smg7	94	67.299	Gadus_morhua
ENSMUSG00000042772	Smg7	100	88.024	ENSGALG00000004667	SMG7	100	87.850	Gallus_gallus
ENSMUSG00000042772	Smg7	99	64.003	ENSGAFG00000019000	smg7	99	63.832	Gambusia_affinis
ENSMUSG00000042772	Smg7	97	64.248	ENSGACG00000001634	smg7	99	64.279	Gasterosteus_aculeatus
ENSMUSG00000042772	Smg7	100	96.084	ENSGGOG00000002342	SMG7	100	94.987	Gorilla_gorilla
ENSMUSG00000042772	Smg7	99	64.244	ENSHBUG00000003726	smg7	97	72.081	Haplochromis_burtoni
ENSMUSG00000042772	Smg7	100	94.635	ENSHGLG00000009353	SMG7	100	95.633	Heterocephalus_glaber_female
ENSMUSG00000042772	Smg7	100	88.060	ENSHGLG00100004878	-	100	88.060	Heterocephalus_glaber_male
ENSMUSG00000042772	Smg7	100	94.723	ENSHGLG00100009637	-	100	94.723	Heterocephalus_glaber_male
ENSMUSG00000042772	Smg7	99	67.247	ENSIPUG00000016997	smg7	99	67.509	Ictalurus_punctatus
ENSMUSG00000042772	Smg7	100	96.258	ENSSTOG00000000401	SMG7	100	96.258	Ictidomys_tridecemlineatus
ENSMUSG00000042772	Smg7	100	95.000	ENSJJAG00000012351	Smg7	100	95.000	Jaculus_jaculus
ENSMUSG00000042772	Smg7	90	69.500	ENSKMAG00000004900	smg7	97	69.500	Kryptolebias_marmoratus
ENSMUSG00000042772	Smg7	99	65.259	ENSLBEG00000002983	smg7	99	65.431	Labrus_bergylta
ENSMUSG00000042772	Smg7	52	62.040	ENSLBEG00000005220	-	75	63.923	Labrus_bergylta
ENSMUSG00000042772	Smg7	99	75.434	ENSLACG00000000972	SMG7	99	75.326	Latimeria_chalumnae
ENSMUSG00000042772	Smg7	99	67.308	ENSLOCG00000002010	smg7	99	67.726	Lepisosteus_oculatus
ENSMUSG00000042772	Smg7	100	95.474	ENSLAFG00000008186	SMG7	100	95.474	Loxodonta_africana
ENSMUSG00000042772	Smg7	100	96.258	ENSMFAG00000031653	SMG7	100	96.231	Macaca_fascicularis
ENSMUSG00000042772	Smg7	100	96.171	ENSMMUG00000018458	SMG7	98	96.171	Macaca_mulatta
ENSMUSG00000042772	Smg7	100	95.075	ENSMNEG00000034798	SMG7	100	95.075	Macaca_nemestrina
ENSMUSG00000042772	Smg7	100	96.171	ENSMLEG00000037170	SMG7	100	95.075	Mandrillus_leucophaeus
ENSMUSG00000042772	Smg7	88	64.286	ENSMAMG00000018733	smg7	85	64.922	Mastacembelus_armatus
ENSMUSG00000042772	Smg7	99	64.987	ENSMZEG00005015247	smg7	99	65.210	Maylandia_zebra
ENSMUSG00000042772	Smg7	99	87.721	ENSMGAG00000001561	SMG7	99	87.544	Meleagris_gallopavo
ENSMUSG00000042772	Smg7	100	98.345	ENSMAUG00000019484	Smg7	100	98.345	Mesocricetus_auratus
ENSMUSG00000042772	Smg7	100	95.997	ENSMICG00000007145	SMG7	100	95.997	Microcebus_murinus
ENSMUSG00000042772	Smg7	100	98.084	ENSMOCG00000020748	Smg7	100	98.084	Microtus_ochrogaster
ENSMUSG00000042772	Smg7	99	64.298	ENSMMOG00000001524	smg7	99	64.379	Mola_mola
ENSMUSG00000042772	Smg7	92	90.892	ENSMODG00000007139	SMG7	99	90.892	Monodelphis_domestica
ENSMUSG00000042772	Smg7	99	64.519	ENSMALG00000000061	smg7	93	67.164	Monopterus_albus
ENSMUSG00000042772	Smg7	100	99.390	MGP_CAROLIEiJ_G0014704	Smg7	100	99.390	Mus_caroli
ENSMUSG00000042772	Smg7	100	99.129	MGP_PahariEiJ_G0027940	Smg7	100	99.129	Mus_pahari
ENSMUSG00000042772	Smg7	100	99.913	MGP_SPRETEiJ_G0015511	Smg7	100	99.913	Mus_spretus
ENSMUSG00000042772	Smg7	98	95.633	ENSMPUG00000011732	SMG7	97	95.811	Mustela_putorius_furo
ENSMUSG00000042772	Smg7	99	94.881	ENSMLUG00000015417	SMG7	99	94.881	Myotis_lucifugus
ENSMUSG00000042772	Smg7	100	96.951	ENSNGAG00000009836	Smg7	100	96.951	Nannospalax_galili
ENSMUSG00000042772	Smg7	98	60.643	ENSNBRG00000024343	smg7	98	70.000	Neolamprologus_brichardi
ENSMUSG00000042772	Smg7	100	96.171	ENSNLEG00000018018	SMG7	100	95.075	Nomascus_leucogenys
ENSMUSG00000042772	Smg7	77	85.573	ENSMEUG00000004681	SMG7	73	91.870	Notamacropus_eugenii
ENSMUSG00000042772	Smg7	96	83.744	ENSOPRG00000013942	SMG7	96	83.470	Ochotona_princeps
ENSMUSG00000042772	Smg7	100	95.648	ENSODEG00000010390	SMG7	100	95.648	Octodon_degus
ENSMUSG00000042772	Smg7	99	64.129	ENSONIG00000000277	smg7	99	64.816	Oreochromis_niloticus
ENSMUSG00000042772	Smg7	98	90.337	ENSOANG00000000994	SMG7	100	90.248	Ornithorhynchus_anatinus
ENSMUSG00000042772	Smg7	100	88.773	ENSOCUG00000005887	SMG7	94	88.947	Oryctolagus_cuniculus
ENSMUSG00000042772	Smg7	99	62.759	ENSORLG00000007314	smg7	99	62.586	Oryzias_latipes
ENSMUSG00000042772	Smg7	99	63.190	ENSORLG00020015779	smg7	99	63.103	Oryzias_latipes_hni
ENSMUSG00000042772	Smg7	99	64.970	ENSORLG00015012289	smg7	99	62.931	Oryzias_latipes_hsok
ENSMUSG00000042772	Smg7	99	62.562	ENSOMEG00000002328	smg7	99	62.562	Oryzias_melastigma
ENSMUSG00000042772	Smg7	97	95.104	ENSOGAG00000003107	SMG7	94	95.286	Otolemur_garnettii
ENSMUSG00000042772	Smg7	100	94.778	ENSOARG00000001352	SMG7	98	94.778	Ovis_aries
ENSMUSG00000042772	Smg7	100	95.075	ENSPPAG00000031619	SMG7	100	95.075	Pan_paniscus
ENSMUSG00000042772	Smg7	100	95.648	ENSPPRG00000011222	SMG7	100	94.899	Panthera_pardus
ENSMUSG00000042772	Smg7	96	95.351	ENSPTIG00000007242	SMG7	100	91.266	Panthera_tigris_altaica
ENSMUSG00000042772	Smg7	100	95.075	ENSPTRG00000001764	SMG7	100	95.075	Pan_troglodytes
ENSMUSG00000042772	Smg7	100	96.171	ENSPANG00000004520	SMG7	100	95.075	Papio_anubis
ENSMUSG00000042772	Smg7	99	64.179	ENSPKIG00000007242	smg7	99	69.000	Paramormyrops_kingsleyae
ENSMUSG00000042772	Smg7	99	90.733	ENSPSIG00000012201	SMG7	99	90.203	Pelodiscus_sinensis
ENSMUSG00000042772	Smg7	71	42.739	ENSPMGG00000021833	smg7	89	54.000	Periophthalmus_magnuspinnatus
ENSMUSG00000042772	Smg7	100	97.300	ENSPEMG00000011315	Smg7	100	97.300	Peromyscus_maniculatus_bairdii
ENSMUSG00000042772	Smg7	100	91.388	ENSPCIG00000003786	SMG7	100	91.213	Phascolarctos_cinereus
ENSMUSG00000042772	Smg7	99	62.758	ENSPFOG00000019219	smg7	99	62.871	Poecilia_formosa
ENSMUSG00000042772	Smg7	99	64.089	ENSPLAG00000001446	smg7	99	64.003	Poecilia_latipinna
ENSMUSG00000042772	Smg7	96	63.265	ENSPMEG00000005218	smg7	99	63.177	Poecilia_mexicana
ENSMUSG00000042772	Smg7	87	61.122	ENSPREG00000019039	smg7	91	61.062	Poecilia_reticulata
ENSMUSG00000042772	Smg7	100	95.163	ENSPPYG00000000427	SMG7	100	95.163	Pongo_abelii
ENSMUSG00000042772	Smg7	95	84.133	ENSPCAG00000008360	SMG7	95	83.333	Procavia_capensis
ENSMUSG00000042772	Smg7	100	95.997	ENSPCOG00000011996	SMG7	98	95.997	Propithecus_coquereli
ENSMUSG00000042772	Smg7	92	89.293	ENSPVAG00000000851	SMG7	89	89.615	Pteropus_vampyrus
ENSMUSG00000042772	Smg7	99	65.150	ENSPNYG00000007643	smg7	99	65.064	Pundamilia_nyererei
ENSMUSG00000042772	Smg7	99	67.244	ENSPNAG00000011374	smg7	98	68.182	Pygocentrus_nattereri
ENSMUSG00000042772	Smg7	100	98.346	ENSRNOG00000027962	Smg7	100	98.335	Rattus_norvegicus
ENSMUSG00000042772	Smg7	100	96.084	ENSRBIG00000036316	SMG7	100	94.987	Rhinopithecus_bieti
ENSMUSG00000042772	Smg7	100	96.084	ENSRROG00000035719	SMG7	100	96.056	Rhinopithecus_roxellana
ENSMUSG00000042772	Smg7	100	95.618	ENSSBOG00000023454	SMG7	100	95.618	Saimiri_boliviensis_boliviensis
ENSMUSG00000042772	Smg7	100	91.220	ENSSHAG00000013147	SMG7	100	90.957	Sarcophilus_harrisii
ENSMUSG00000042772	Smg7	99	68.527	ENSSFOG00015017252	smg7	99	76.316	Scleropages_formosus
ENSMUSG00000042772	Smg7	99	64.797	ENSSMAG00000006067	smg7	99	64.858	Scophthalmus_maximus
ENSMUSG00000042772	Smg7	95	71.071	ENSSDUG00000017543	smg7	99	64.920	Seriola_dumerili
ENSMUSG00000042772	Smg7	99	88.251	ENSSPUG00000002064	SMG7	99	88.074	Sphenodon_punctatus
ENSMUSG00000042772	Smg7	100	65.315	ENSSPAG00000008733	smg7	100	65.404	Stegastes_partitus
ENSMUSG00000042772	Smg7	100	95.618	ENSSSCG00000015558	SMG7	100	95.618	Sus_scrofa
ENSMUSG00000042772	Smg7	99	87.401	ENSTGUG00000003928	SMG7	100	87.313	Taeniopygia_guttata
ENSMUSG00000042772	Smg7	99	63.415	ENSTNIG00000002802	smg7	99	63.291	Tetraodon_nigroviridis
ENSMUSG00000042772	Smg7	77	94.492	ENSTBEG00000003220	SMG7	75	94.492	Tupaia_belangeri
ENSMUSG00000042772	Smg7	96	95.342	ENSTTRG00000014778	SMG7	94	95.342	Tursiops_truncatus
ENSMUSG00000042772	Smg7	96	91.416	ENSUAMG00000017473	SMG7	100	91.598	Ursus_americanus
ENSMUSG00000042772	Smg7	96	95.450	ENSUMAG00000016389	SMG7	100	95.632	Ursus_maritimus
ENSMUSG00000042772	Smg7	100	95.443	ENSVVUG00000008976	SMG7	100	95.618	Vulpes_vulpes
ENSMUSG00000042772	Smg7	100	70.345	ENSXETG00000012528	smg7	100	70.009	Xenopus_tropicalis
ENSMUSG00000042772	Smg7	99	64.028	ENSXMAG00000007123	smg7	99	64.200	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0045111	intermediate filament cytoskeleton	-	ISO	Component
GO:0051721	protein phosphatase 2A binding	-	ISO	Function
GO:0070034	telomerase RNA binding	21873635.	IBA	Function