EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000042851 (Gene tree)
Gene ID: 78751
Gene Symbol: Zc3h6
Alias: 4631426G04Rik|4833425H18Rik
Full Name: zinc finger CCCH type containing 6
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 51162 bases
Position: chr2:128967402-129018563
Accession: 1926001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000105949	zf-CCCH	PF00642.24	3.7e-11	1	2
ENSMUSP00000105949	zf-CCCH	PF00642.24	3.7e-11	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000110320	-	4916	XM_011239850	ENSMUSP00000105949	1177 (aa)	XP_011238152	A2AP88
ENSMUST00000110319	-	1484	-	ENSMUSP00000105948	151 (aa)	-	Q8BYK8

Gene Model

Click here to download ENSMUSG00000042851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000042851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000042851	Zc3h6	64	49.770	ENSMUSG00000059273	Zc3h4	91	33.428

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000042851	Zc3h6	100	76.574	ENSG00000188177	ZC3H6	100	76.490	Homo_sapiens
ENSMUSG00000042851	Zc3h6	100	73.468	ENSAMEG00000016194	ZC3H6	100	72.689	Ailuropoda_melanoleuca
ENSMUSG00000042851	Zc3h6	61	66.321	ENSACIG00000021843	zc3h6	84	42.377	Amphilophus_citrinellus
ENSMUSG00000042851	Zc3h6	61	66.667	ENSAOCG00000004039	zc3h6	90	43.345	Amphiprion_ocellaris
ENSMUSG00000042851	Zc3h6	61	66.667	ENSAPEG00000014561	zc3h6	90	42.986	Amphiprion_percula
ENSMUSG00000042851	Zc3h6	80	40.261	ENSATEG00000019063	zc3h6	84	45.208	Anabas_testudineus
ENSMUSG00000042851	Zc3h6	99	56.554	ENSAPLG00000014287	ZC3H6	99	57.332	Anas_platyrhynchos
ENSMUSG00000042851	Zc3h6	100	76.510	ENSANAG00000024229	ZC3H6	100	76.174	Aotus_nancymaae
ENSMUSG00000042851	Zc3h6	100	76.678	ENSCJAG00000016479	ZC3H6	100	76.342	Callithrix_jacchus
ENSMUSG00000042851	Zc3h6	100	73.782	ENSCAFG00000007160	ZC3H6	100	72.330	Canis_familiaris
ENSMUSG00000042851	Zc3h6	100	72.101	ENSCAFG00020017525	ZC3H6	100	70.648	Canis_lupus_dingo
ENSMUSG00000042851	Zc3h6	80	70.085	ENSCHIG00000019719	-	95	70.651	Capra_hircus
ENSMUSG00000042851	Zc3h6	100	76.742	ENSTSYG00000031857	ZC3H6	100	76.071	Carlito_syrichta
ENSMUSG00000042851	Zc3h6	99	71.173	ENSCPOG00000003445	ZC3H6	100	71.939	Cavia_porcellus
ENSMUSG00000042851	Zc3h6	100	77.078	ENSCATG00000036595	ZC3H6	100	76.994	Cercocebus_atys
ENSMUSG00000042851	Zc3h6	90	74.323	ENSCLAG00000006605	ZC3H6	100	74.416	Chinchilla_lanigera
ENSMUSG00000042851	Zc3h6	90	76.097	ENSCSAG00000016793	ZC3H6	100	75.724	Chlorocebus_sabaeus
ENSMUSG00000042851	Zc3h6	99	76.949	ENSCANG00000041036	ZC3H6	100	76.864	Colobus_angolensis_palliatus
ENSMUSG00000042851	Zc3h6	99	82.097	ENSCGRG00001022022	Zc3h6	99	82.097	Cricetulus_griseus_chok1gshd
ENSMUSG00000042851	Zc3h6	99	85.043	ENSCGRG00000016162	Zc3h6	100	85.043	Cricetulus_griseus_crigri
ENSMUSG00000042851	Zc3h6	68	54.225	ENSCSEG00000012267	zc3h6	83	53.684	Cynoglossus_semilaevis
ENSMUSG00000042851	Zc3h6	99	67.432	ENSDNOG00000044811	ZC3H6	100	67.177	Dasypus_novemcinctus
ENSMUSG00000042851	Zc3h6	99	73.367	ENSDORG00000013967	Zc3h6	100	72.858	Dipodomys_ordii
ENSMUSG00000042851	Zc3h6	83	74.067	ENSEASG00005006493	ZC3H6	99	74.067	Equus_asinus_asinus
ENSMUSG00000042851	Zc3h6	100	75.231	ENSECAG00000023620	ZC3H6	100	74.895	Equus_caballus
ENSMUSG00000042851	Zc3h6	82	66.543	ENSEEUG00000013883	-	85	66.729	Erinaceus_europaeus
ENSMUSG00000042851	Zc3h6	100	74.286	ENSFCAG00000008089	ZC3H6	100	73.866	Felis_catus
ENSMUSG00000042851	Zc3h6	99	57.059	ENSFALG00000011589	ZC3H6	99	57.143	Ficedula_albicollis
ENSMUSG00000042851	Zc3h6	99	75.297	ENSFDAG00000002521	ZC3H6	99	75.212	Fukomys_damarensis
ENSMUSG00000042851	Zc3h6	99	56.612	ENSGALG00000008269	ZC3H6	98	57.285	Gallus_gallus
ENSMUSG00000042851	Zc3h6	62	56.459	ENSGAFG00000006771	zc3h6	79	56.897	Gambusia_affinis
ENSMUSG00000042851	Zc3h6	62	60.094	ENSGACG00000005343	zc3h6	92	42.430	Gasterosteus_aculeatus
ENSMUSG00000042851	Zc3h6	99	58.759	ENSGAGG00000010857	ZC3H6	99	58.606	Gopherus_agassizii
ENSMUSG00000042851	Zc3h6	100	76.910	ENSGGOG00000001665	ZC3H6	100	76.826	Gorilla_gorilla
ENSMUSG00000042851	Zc3h6	99	74.979	ENSHGLG00000011882	ZC3H6	96	75.064	Heterocephalus_glaber_female
ENSMUSG00000042851	Zc3h6	99	73.469	ENSHGLG00100002559	ZC3H6	100	73.469	Heterocephalus_glaber_male
ENSMUSG00000042851	Zc3h6	82	42.251	ENSHCOG00000012519	zc3h6	87	45.085	Hippocampus_comes
ENSMUSG00000042851	Zc3h6	90	74.510	ENSSTOG00000008120	-	100	74.603	Ictidomys_tridecemlineatus
ENSMUSG00000042851	Zc3h6	100	76.852	ENSJJAG00000013206	Zc3h6	100	76.936	Jaculus_jaculus
ENSMUSG00000042851	Zc3h6	61	64.583	ENSKMAG00000016252	zc3h6	85	45.684	Kryptolebias_marmoratus
ENSMUSG00000042851	Zc3h6	63	64.249	ENSLBEG00000003054	zc3h6	87	40.208	Labrus_bergylta
ENSMUSG00000042851	Zc3h6	99	45.367	ENSLACG00000012014	ZC3H6	100	46.437	Latimeria_chalumnae
ENSMUSG00000042851	Zc3h6	100	42.323	ENSLOCG00000016548	zc3h6	98	42.706	Lepisosteus_oculatus
ENSMUSG00000042851	Zc3h6	93	70.209	ENSLAFG00000001151	ZC3H6	100	70.036	Loxodonta_africana
ENSMUSG00000042851	Zc3h6	100	77.246	ENSMFAG00000036963	ZC3H6	100	77.162	Macaca_fascicularis
ENSMUSG00000042851	Zc3h6	100	77.162	ENSMMUG00000016430	ZC3H6	100	77.078	Macaca_mulatta
ENSMUSG00000042851	Zc3h6	100	76.994	ENSMNEG00000031225	ZC3H6	100	76.910	Macaca_nemestrina
ENSMUSG00000042851	Zc3h6	100	77.162	ENSMLEG00000038821	ZC3H6	100	77.078	Mandrillus_leucophaeus
ENSMUSG00000042851	Zc3h6	99	56.860	ENSMGAG00000003025	ZC3H6	99	57.438	Meleagris_gallopavo
ENSMUSG00000042851	Zc3h6	100	84.674	ENSMAUG00000017009	Zc3h6	100	84.674	Mesocricetus_auratus
ENSMUSG00000042851	Zc3h6	100	77.330	ENSMICG00000036353	ZC3H6	100	76.742	Microcebus_murinus
ENSMUSG00000042851	Zc3h6	100	83.701	ENSMOCG00000002054	Zc3h6	100	83.701	Microtus_ochrogaster
ENSMUSG00000042851	Zc3h6	99	61.487	ENSMODG00000006612	ZC3H6	100	61.153	Monodelphis_domestica
ENSMUSG00000042851	Zc3h6	61	64.975	ENSMALG00000002048	zc3h6	98	38.488	Monopterus_albus
ENSMUSG00000042851	Zc3h6	100	95.837	MGP_CAROLIEiJ_G0024278	Zc3h6	100	95.837	Mus_caroli
ENSMUSG00000042851	Zc3h6	100	94.647	MGP_PahariEiJ_G0025723	Zc3h6	100	94.647	Mus_pahari
ENSMUSG00000042851	Zc3h6	100	98.471	MGP_SPRETEiJ_G0025198	Zc3h6	100	98.471	Mus_spretus
ENSMUSG00000042851	Zc3h6	90	71.615	ENSMPUG00000009624	ZC3H6	100	71.335	Mustela_putorius_furo
ENSMUSG00000042851	Zc3h6	99	69.580	ENSMLUG00000004896	ZC3H6	99	69.748	Myotis_lucifugus
ENSMUSG00000042851	Zc3h6	94	76.050	ENSNGAG00000013596	Zc3h6	99	76.054	Nannospalax_galili
ENSMUSG00000042851	Zc3h6	60	64.216	ENSNBRG00000015382	zc3h6	84	42.825	Neolamprologus_brichardi
ENSMUSG00000042851	Zc3h6	99	76.311	ENSNLEG00000033657	ZC3H6	99	76.227	Nomascus_leucogenys
ENSMUSG00000042851	Zc3h6	100	70.420	ENSOPRG00000012717	ZC3H6	100	70.336	Ochotona_princeps
ENSMUSG00000042851	Zc3h6	94	72.841	ENSODEG00000009099	ZC3H6	99	73.101	Octodon_degus
ENSMUSG00000042851	Zc3h6	83	41.553	ENSONIG00000009880	zc3h6	90	41.828	Oreochromis_niloticus
ENSMUSG00000042851	Zc3h6	99	62.763	ENSOANG00000012054	-	96	62.332	Ornithorhynchus_anatinus
ENSMUSG00000042851	Zc3h6	95	73.540	ENSOCUG00000011125	ZC3H6	100	72.854	Oryctolagus_cuniculus
ENSMUSG00000042851	Zc3h6	61	67.188	ENSORLG00000011179	zc3h6	86	46.809	Oryzias_latipes
ENSMUSG00000042851	Zc3h6	61	67.188	ENSORLG00020017202	zc3h6	86	46.809	Oryzias_latipes_hni
ENSMUSG00000042851	Zc3h6	82	45.085	ENSORLG00015001664	zc3h6	86	47.021	Oryzias_latipes_hsok
ENSMUSG00000042851	Zc3h6	82	45.299	ENSOMEG00000001296	zc3h6	86	46.552	Oryzias_melastigma
ENSMUSG00000042851	Zc3h6	99	76.122	ENSOGAG00000002556	ZC3H6	100	75.445	Otolemur_garnettii
ENSMUSG00000042851	Zc3h6	100	71.560	ENSOARG00000014503	ZC3H6	100	70.973	Ovis_aries
ENSMUSG00000042851	Zc3h6	99	76.610	ENSPPAG00000030495	ZC3H6	100	76.525	Pan_paniscus
ENSMUSG00000042851	Zc3h6	100	74.454	ENSPPRG00000005673	ZC3H6	100	74.034	Panthera_pardus
ENSMUSG00000042851	Zc3h6	99	73.080	ENSPTIG00000015800	ZC3H6	99	72.658	Panthera_tigris_altaica
ENSMUSG00000042851	Zc3h6	100	76.910	ENSPTRG00000012363	ZC3H6	100	76.826	Pan_troglodytes
ENSMUSG00000042851	Zc3h6	100	76.910	ENSPANG00000025224	ZC3H6	100	76.826	Papio_anubis
ENSMUSG00000042851	Zc3h6	60	68.750	ENSPKIG00000007353	zc3h6	91	68.750	Paramormyrops_kingsleyae
ENSMUSG00000042851	Zc3h6	98	58.903	ENSPSIG00000002520	ZC3H6	100	58.749	Pelodiscus_sinensis
ENSMUSG00000042851	Zc3h6	99	82.203	ENSPEMG00000000918	Zc3h6	100	82.203	Peromyscus_maniculatus_bairdii
ENSMUSG00000042851	Zc3h6	90	63.460	ENSPCIG00000029741	ZC3H6	100	63.090	Phascolarctos_cinereus
ENSMUSG00000042851	Zc3h6	61	64.583	ENSPFOG00000015748	zc3h6	86	46.681	Poecilia_formosa
ENSMUSG00000042851	Zc3h6	61	64.583	ENSPLAG00000002469	zc3h6	86	46.681	Poecilia_latipinna
ENSMUSG00000042851	Zc3h6	61	64.583	ENSPMEG00000020802	zc3h6	83	64.550	Poecilia_mexicana
ENSMUSG00000042851	Zc3h6	66	62.136	ENSPREG00000023126	zc3h6	94	41.810	Poecilia_reticulata
ENSMUSG00000042851	Zc3h6	78	67.819	ENSPCAG00000015468	ZC3H6	77	66.415	Procavia_capensis
ENSMUSG00000042851	Zc3h6	100	77.078	ENSPCOG00000016627	ZC3H6	100	75.903	Propithecus_coquereli
ENSMUSG00000042851	Zc3h6	69	87.129	ENSPVAG00000013728	ZC3H6	70	87.129	Pteropus_vampyrus
ENSMUSG00000042851	Zc3h6	62	63.725	ENSPNYG00000018130	zc3h6	85	42.601	Pundamilia_nyererei
ENSMUSG00000042851	Zc3h6	79	41.383	ENSPNAG00000009331	zc3h6	98	38.836	Pygocentrus_nattereri
ENSMUSG00000042851	Zc3h6	100	91.363	ENSRNOG00000026277	Zc3h6	100	90.771	Rattus_norvegicus
ENSMUSG00000042851	Zc3h6	100	76.678	ENSSBOG00000033489	ZC3H6	100	76.342	Saimiri_boliviensis_boliviensis
ENSMUSG00000042851	Zc3h6	83	63.317	ENSSHAG00000016634	ZC3H6	100	63.317	Sarcophilus_harrisii
ENSMUSG00000042851	Zc3h6	100	37.580	ENSSFOG00015004488	zc3h6	98	38.592	Scleropages_formosus
ENSMUSG00000042851	Zc3h6	62	62.745	ENSSMAG00000008411	zc3h6	90	42.049	Scophthalmus_maximus
ENSMUSG00000042851	Zc3h6	61	66.667	ENSSDUG00000006105	zc3h6	91	43.907	Seriola_dumerili
ENSMUSG00000042851	Zc3h6	61	66.667	ENSSLDG00000021813	zc3h6	91	43.907	Seriola_lalandi_dorsalis
ENSMUSG00000042851	Zc3h6	99	68.051	ENSSARG00000001035	ZC3H6	100	67.797	Sorex_araneus
ENSMUSG00000042851	Zc3h6	61	60.630	ENSSPUG00000013031	-	62	48.889	Sphenodon_punctatus
ENSMUSG00000042851	Zc3h6	100	74.622	ENSSSCG00000008096	ZC3H6	100	74.442	Sus_scrofa
ENSMUSG00000042851	Zc3h6	99	56.229	ENSTGUG00000007468	ZC3H6	100	56.728	Taeniopygia_guttata
ENSMUSG00000042851	Zc3h6	100	38.394	ENSTRUG00000012901	zc3h6	98	38.217	Takifugu_rubripes
ENSMUSG00000042851	Zc3h6	67	54.909	ENSTNIG00000016608	zc3h6	74	65.306	Tetraodon_nigroviridis
ENSMUSG00000042851	Zc3h6	85	73.913	ENSTBEG00000016232	ZC3H6	91	71.014	Tupaia_belangeri
ENSMUSG00000042851	Zc3h6	76	83.168	ENSTTRG00000013154	ZC3H6	75	83.168	Tursiops_truncatus
ENSMUSG00000042851	Zc3h6	90	72.269	ENSUAMG00000002401	ZC3H6	100	71.615	Ursus_americanus
ENSMUSG00000042851	Zc3h6	90	72.269	ENSUMAG00000008663	ZC3H6	100	73.077	Ursus_maritimus
ENSMUSG00000042851	Zc3h6	99	72.904	ENSVPAG00000005912	ZC3H6	100	72.312	Vicugna_pacos
ENSMUSG00000042851	Zc3h6	90	72.897	ENSVVUG00000028662	ZC3H6	100	72.243	Vulpes_vulpes
ENSMUSG00000042851	Zc3h6	87	55.270	ENSXETG00000013762	zc3h6	95	56.183	Xenopus_tropicalis
ENSMUSG00000042851	Zc3h6	56	59.459	ENSXCOG00000011662	zc3h6	76	53.333	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function