EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000043079 (Gene tree)
Gene ID: 104027
Gene Symbol: Synpo
Alias: 9030217H17Rik|9330140I15Rik
Full Name: synaptopodin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 66170
Position: chr18: 60593973-60660142
Accession: 1099446
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000155195	-	4442	-	ENSMUSP00000117897	690 (aa)	-	Q8CC35
ENSMUST00000160395	-	418	-	-	- (aa)	-	-
ENSMUST00000154857	-	642	-	-	- (aa)	-	-
ENSMUST00000139236	-	214	-	-	- (aa)	-	-
ENSMUST00000128528	-	2601	-	-	- (aa)	-	-
ENSMUST00000115318	-	4479	-	ENSMUSP00000110973	690 (aa)	-	Q8CC35
ENSMUST00000097566	-	5060	XM_006525475	ENSMUSP00000095174	901 (aa)	XP_006525538	Q8CC35
ENSMUST00000123288	-	477	-	ENSMUSP00000124122	15 (aa)	-	E0CYK1
ENSMUST00000130360	-	5159	XM_006525468	ENSMUSP00000115355	1100 (aa)	XP_006525531	E9Q3E2
ENSMUST00000143275	-	5040	-	ENSMUSP00000125272	929 (aa)	-	Q8CC35
ENSMUST00000137894	-	1926	-	-	- (aa)	-	-
ENSMUST00000130044	-	4970	XM_006525474	ENSMUSP00000121756	901 (aa)	XP_006525537	Q8CC35

Gene Model

Click here to download ENSMUSG00000043079's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000043079's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001725	stress fiber	21873635.	IBA	Component
GO:0001725	stress fiber	15841212.	IDA	Component
GO:0003779	actin binding	21873635.	IBA	Function
GO:0003779	actin binding	9314539.	IDA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005923	bicellular tight junction	-	IEA	Component
GO:0008542	visual learning	12928494.	IMP	Process
GO:0015629	actin cytoskeleton	21873635.	IBA	Component
GO:0015629	actin cytoskeleton	9314539.	IDA	Component
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0030018	Z disc	21873635.	IBA	Component
GO:0030054	cell junction	-	IEA	Component
GO:0030424	axon	9314539.	ISO	Component
GO:0030425	dendrite	9314539.	ISO	Component
GO:0030865	cortical cytoskeleton organization	15841212.	NAS	Process
GO:0032233	positive regulation of actin filament bundle assembly	21873635.	IBA	Process
GO:0032233	positive regulation of actin filament bundle assembly	15841212.	IDA	Process
GO:0042995	cell projection	-	IEA	Component
GO:0043197	dendritic spine	15841212.	NAS	Component
GO:0045202	synapse	-	IEA	Component
GO:0045211	postsynaptic membrane	-	IEA	Component
GO:0048169	regulation of long-term neuronal synaptic plasticity	12928494.	IMP	Process
GO:0051492	regulation of stress fiber assembly	15841212.	IDA	Process
GO:0097444	spine apparatus	21873635.	IBA	Component
GO:0097444	spine apparatus	12928494.	IDA	Component
GO:0097444	spine apparatus	-	ISO	Component
GO:0098685	Schaffer collateral - CA1 synapse	12928494.	IMP	Component
GO:0098886	modification of dendritic spine	21873635.	IBA	Process
GO:0098886	modification of dendritic spine	-	ISO	Process
GO:0098978	glutamatergic synapse	25164660.	IDA	Component
GO:0098978	glutamatergic synapse	12928494.25164660.	IMP	Component
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0099170	postsynaptic modulation of chemical synaptic transmission	12928494.	IMP	Process
GO:0099588	positive regulation of postsynaptic cytosolic calcium concentration	25164660.	IDA	Process
GO:0099588	positive regulation of postsynaptic cytosolic calcium concentration	25164660.	IMP	Process
GO:1905355	spine apparatus assembly	21873635.	IBA	Process
GO:1905355	spine apparatus assembly	12928494.	IMP	Process