EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000043091 (Gene tree)
Gene ID: 22146
Gene Symbol: Tuba1c
Alias: M[a]6|Tuba6
Full Name: tubulin%2C alpha 1C
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 8220
Position: chr15: 99029891-99038110
Accession: 1095409
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000058914	-	1982	-	ENSMUSP00000051033	449 (aa)	-	P68373
ENSMUST00000230447	-	781	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000043091's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04145	Phagosome	KEGG
mmu04210	Apoptosis	KEGG
mmu04530	Tight junction	KEGG
mmu04540	Gap junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000043091's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000043091	Tuba1c	100	98.448	ENSDARG00000055216	tuba1c	99	99.770	Danio_rerio
ENSMUSG00000043091	Tuba1c	100	99.332	ENSG00000167553	TUBA1C	100	99.332	Homo_sapiens
ENSMUSG00000043091	Tuba1c	100	96.444	ENSMUSG00000067338	Tuba3b	100	96.444	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0003924	GTPase activity	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	21873635.	IBA	Component
GO:0005881	cytoplasmic microtubule	19103752.	IDA	Component
GO:0007017	microtubule-based process	21873635.	IBA	Process
GO:0015630	microtubule cytoskeleton	-	ISO	Component
GO:0045121	membrane raft	-	ISO	Component