EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000043241 (Gene tree)
Gene ID: 326622
Gene Symbol: Upf2
Alias: -
Full Name: UPF2 regulator of nonsense transcripts homolog (yeast)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 105235 bases
Position: chr2:5951469-6056703
Accession: 2449307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000058375	Upf2	PF04050.14	3.2e-32	1	1
ENSMUSP00000119348	Upf2	PF04050.14	1.3e-31	1	1
ENSMUSP00000058375	MIF4G	PF02854.19	8.2e-77	1	3
ENSMUSP00000058375	MIF4G	PF02854.19	8.2e-77	2	3
ENSMUSP00000058375	MIF4G	PF02854.19	8.2e-77	3	3
ENSMUSP00000119348	MIF4G	PF02854.19	4.9e-44	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000128200	-	2826	-	ENSMUSP00000119348	523 (aa)	-	F6Q3G7
ENSMUST00000060092	-	5174	XM_006497485	ENSMUSP00000058375	1269 (aa)	XP_006497548	A2AT37
ENSMUST00000144901	-	544	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000043241's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000043241's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000043241	Upf2	100	96.934	ENSG00000151461	UPF2	100	96.934	Homo_sapiens
ENSMUSG00000043241	Upf2	99	80.418	ENSAPOG00000015837	UPF2	100	78.605	Acanthochromis_polyacanthus
ENSMUSG00000043241	Upf2	100	97.404	ENSAMEG00000004586	UPF2	100	97.404	Ailuropoda_melanoleuca
ENSMUSG00000043241	Upf2	99	83.712	ENSACIG00000018078	UPF2	100	82.330	Amphilophus_citrinellus
ENSMUSG00000043241	Upf2	100	82.761	ENSAOCG00000016766	UPF2	100	82.761	Amphiprion_ocellaris
ENSMUSG00000043241	Upf2	100	82.839	ENSAPEG00000019084	UPF2	100	82.839	Amphiprion_percula
ENSMUSG00000043241	Upf2	100	82.582	ENSATEG00000021677	UPF2	99	82.555	Anabas_testudineus
ENSMUSG00000043241	Upf2	99	89.101	ENSAPLG00000010287	UPF2	100	86.546	Anas_platyrhynchos
ENSMUSG00000043241	Upf2	99	94.476	ENSACAG00000009259	UPF2	100	91.424	Anolis_carolinensis
ENSMUSG00000043241	Upf2	99	97.323	ENSANAG00000028451	UPF2	99	85.366	Aotus_nancymaae
ENSMUSG00000043241	Upf2	99	83.962	ENSACLG00000012696	UPF2	100	82.592	Astatotilapia_calliptera
ENSMUSG00000043241	Upf2	99	84.381	ENSAMXG00000013700	UPF2	99	83.634	Astyanax_mexicanus
ENSMUSG00000043241	Upf2	100	97.325	ENSBTAG00000000288	UPF2	100	97.325	Bos_taurus
ENSMUSG00000043241	Upf2	100	96.934	ENSCJAG00000020685	UPF2	100	96.934	Callithrix_jacchus
ENSMUSG00000043241	Upf2	100	97.561	ENSCAFG00000004839	UPF2	100	97.561	Canis_familiaris
ENSMUSG00000043241	Upf2	99	95.584	ENSCAFG00020005882	UPF2	100	95.584	Canis_lupus_dingo
ENSMUSG00000043241	Upf2	100	97.404	ENSCHIG00000020359	UPF2	100	97.404	Capra_hircus
ENSMUSG00000043241	Upf2	100	96.696	ENSTSYG00000000935	UPF2	100	96.696	Carlito_syrichta
ENSMUSG00000043241	Upf2	99	81.801	ENSCAPG00000016658	UPF2	100	85.784	Cavia_aperea
ENSMUSG00000043241	Upf2	99	96.941	ENSCPOG00000008809	UPF2	100	94.612	Cavia_porcellus
ENSMUSG00000043241	Upf2	100	91.431	ENSCCAG00000035991	UPF2	100	90.480	Cebus_capucinus
ENSMUSG00000043241	Upf2	100	97.170	ENSCATG00000032679	UPF2	100	97.170	Cercocebus_atys
ENSMUSG00000043241	Upf2	100	97.168	ENSCLAG00000011434	UPF2	100	97.168	Chinchilla_lanigera
ENSMUSG00000043241	Upf2	100	97.170	ENSCSAG00000013372	UPF2	100	97.170	Chlorocebus_sabaeus
ENSMUSG00000043241	Upf2	87	99.507	ENSCHOG00000000422	UPF2	89	99.107	Choloepus_hoffmanni
ENSMUSG00000043241	Upf2	99	95.985	ENSCPBG00000027823	UPF2	100	92.671	Chrysemys_picta_bellii
ENSMUSG00000043241	Upf2	99	49.053	ENSCSAVG00000007772	-	99	48.614	Ciona_savignyi
ENSMUSG00000043241	Upf2	99	91.321	ENSCANG00000040396	UPF2	100	91.165	Colobus_angolensis_palliatus
ENSMUSG00000043241	Upf2	100	98.739	ENSCGRG00001019347	Upf2	100	98.739	Cricetulus_griseus_chok1gshd
ENSMUSG00000043241	Upf2	100	98.739	ENSCGRG00000017993	Upf2	100	98.739	Cricetulus_griseus_crigri
ENSMUSG00000043241	Upf2	99	80.340	ENSCSEG00000003520	UPF2	80	79.742	Cynoglossus_semilaevis
ENSMUSG00000043241	Upf2	99	83.051	ENSCVAG00000006167	UPF2	100	81.997	Cyprinodon_variegatus
ENSMUSG00000043241	Upf2	58	79.208	ENSDARG00000111388	CABZ01068469.1	88	81.206	Danio_rerio
ENSMUSG00000043241	Upf2	100	97.246	ENSDNOG00000018160	UPF2	100	97.246	Dasypus_novemcinctus
ENSMUSG00000043241	Upf2	100	97.480	ENSDORG00000002478	Upf2	100	97.480	Dipodomys_ordii
ENSMUSG00000043241	Upf2	72	100.000	ENSETEG00000011583	-	72	100.000	Echinops_telfairi
ENSMUSG00000043241	Upf2	93	77.273	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSMUSG00000043241	Upf2	100	97.246	ENSEASG00005019274	UPF2	100	97.246	Equus_asinus_asinus
ENSMUSG00000043241	Upf2	100	97.325	ENSECAG00000017022	UPF2	100	97.325	Equus_caballus
ENSMUSG00000043241	Upf2	82	91.693	ENSEEUG00000007819	UPF2	82	91.374	Erinaceus_europaeus
ENSMUSG00000043241	Upf2	99	84.030	ENSELUG00000012014	UPF2	100	81.946	Esox_lucius
ENSMUSG00000043241	Upf2	100	98.895	ENSFCAG00000005785	UPF2	100	97.246	Felis_catus
ENSMUSG00000043241	Upf2	99	96.000	ENSFALG00000001889	UPF2	98	93.391	Ficedula_albicollis
ENSMUSG00000043241	Upf2	100	96.929	ENSFDAG00000014348	UPF2	100	96.929	Fukomys_damarensis
ENSMUSG00000043241	Upf2	99	83.774	ENSFHEG00000009826	UPF2	99	82.647	Fundulus_heteroclitus
ENSMUSG00000043241	Upf2	99	83.365	ENSGMOG00000005557	UPF2	100	80.658	Gadus_morhua
ENSMUSG00000043241	Upf2	99	96.190	ENSGALG00000033772	UPF2	100	93.711	Gallus_gallus
ENSMUSG00000043241	Upf2	99	83.396	ENSGAFG00000020867	UPF2	100	81.109	Gambusia_affinis
ENSMUSG00000043241	Upf2	99	83.681	ENSGACG00000001080	UPF2	100	82.330	Gasterosteus_aculeatus
ENSMUSG00000043241	Upf2	99	95.810	ENSGAGG00000002700	UPF2	100	93.234	Gopherus_agassizii
ENSMUSG00000043241	Upf2	100	96.934	ENSGGOG00000001479	UPF2	100	96.934	Gorilla_gorilla
ENSMUSG00000043241	Upf2	99	83.902	ENSHBUG00000004249	UPF2	100	82.565	Haplochromis_burtoni
ENSMUSG00000043241	Upf2	100	96.932	ENSHGLG00000015176	-	100	96.932	Heterocephalus_glaber_female
ENSMUSG00000043241	Upf2	99	88.550	ENSHGLG00000003822	-	99	84.003	Heterocephalus_glaber_female
ENSMUSG00000043241	Upf2	99	96.552	ENSHGLG00100010036	UPF2	100	93.375	Heterocephalus_glaber_male
ENSMUSG00000043241	Upf2	99	83.208	ENSHCOG00000004025	UPF2	99	80.575	Hippocampus_comes
ENSMUSG00000043241	Upf2	100	82.514	ENSIPUG00000015524	UPF2	100	82.891	Ictalurus_punctatus
ENSMUSG00000043241	Upf2	100	97.638	ENSSTOG00000013075	UPF2	100	97.638	Ictidomys_tridecemlineatus
ENSMUSG00000043241	Upf2	100	96.850	ENSJJAG00000004913	Upf2	100	96.850	Jaculus_jaculus
ENSMUSG00000043241	Upf2	99	82.804	ENSKMAG00000001071	UPF2	99	82.647	Kryptolebias_marmoratus
ENSMUSG00000043241	Upf2	100	82.970	ENSLBEG00000016394	-	99	82.788	Labrus_bergylta
ENSMUSG00000043241	Upf2	80	82.596	ENSLBEG00000000728	-	93	82.596	Labrus_bergylta
ENSMUSG00000043241	Upf2	99	79.561	ENSLACG00000015945	UPF2	100	79.686	Latimeria_chalumnae
ENSMUSG00000043241	Upf2	99	86.981	ENSLOCG00000015698	UPF2	100	86.210	Lepisosteus_oculatus
ENSMUSG00000043241	Upf2	100	97.091	ENSMFAG00000043865	UPF2	100	97.091	Macaca_fascicularis
ENSMUSG00000043241	Upf2	100	97.091	ENSMMUG00000008241	UPF2	100	97.091	Macaca_mulatta
ENSMUSG00000043241	Upf2	81	96.780	ENSMNEG00000008062	UPF2	100	96.780	Macaca_nemestrina
ENSMUSG00000043241	Upf2	99	94.366	ENSMLEG00000036120	UPF2	100	98.068	Mandrillus_leucophaeus
ENSMUSG00000043241	Upf2	100	82.271	ENSMAMG00000018276	UPF2	100	82.477	Mastacembelus_armatus
ENSMUSG00000043241	Upf2	99	83.962	ENSMZEG00005021595	UPF2	100	82.592	Maylandia_zebra
ENSMUSG00000043241	Upf2	99	95.992	ENSMGAG00000004573	UPF2	99	93.071	Meleagris_gallopavo
ENSMUSG00000043241	Upf2	99	98.855	ENSMAUG00000016512	Upf2	100	96.375	Mesocricetus_auratus
ENSMUSG00000043241	Upf2	95	98.469	ENSMICG00000001716	UPF2	99	98.469	Microcebus_murinus
ENSMUSG00000043241	Upf2	100	98.266	ENSMOCG00000008263	Upf2	100	98.266	Microtus_ochrogaster
ENSMUSG00000043241	Upf2	99	80.375	ENSMMOG00000006528	UPF2	100	80.314	Mola_mola
ENSMUSG00000043241	Upf2	100	94.650	ENSMODG00000016794	UPF2	100	95.122	Monodelphis_domestica
ENSMUSG00000043241	Upf2	99	82.174	ENSMALG00000002663	UPF2	100	82.459	Monopterus_albus
ENSMUSG00000043241	Upf2	100	98.897	MGP_CAROLIEiJ_G0023157	Upf2	100	99.042	Mus_caroli
ENSMUSG00000043241	Upf2	100	98.739	MGP_PahariEiJ_G0019217	Upf2	100	99.617	Mus_pahari
ENSMUSG00000043241	Upf2	100	99.764	MGP_SPRETEiJ_G0024075	Upf2	100	100.000	Mus_spretus
ENSMUSG00000043241	Upf2	100	97.404	ENSMPUG00000001064	UPF2	100	97.404	Mustela_putorius_furo
ENSMUSG00000043241	Upf2	99	97.897	ENSMLUG00000000228	UPF2	100	97.093	Myotis_lucifugus
ENSMUSG00000043241	Upf2	99	83.962	ENSNBRG00000013629	UPF2	100	82.592	Neolamprologus_brichardi
ENSMUSG00000043241	Upf2	100	97.091	ENSNLEG00000012058	UPF2	100	97.091	Nomascus_leucogenys
ENSMUSG00000043241	Upf2	61	97.126	ENSMEUG00000002180	-	60	97.409	Notamacropus_eugenii
ENSMUSG00000043241	Upf2	84	99.187	ENSOPRG00000006801	-	82	99.296	Ochotona_princeps
ENSMUSG00000043241	Upf2	100	96.932	ENSODEG00000001290	UPF2	100	96.932	Octodon_degus
ENSMUSG00000043241	Upf2	99	84.151	ENSONIG00000017991	UPF2	100	82.670	Oreochromis_niloticus
ENSMUSG00000043241	Upf2	59	95.820	ENSOANG00000019744	-	93	96.809	Ornithorhynchus_anatinus
ENSMUSG00000043241	Upf2	99	96.941	ENSOCUG00000006230	UPF2	100	96.552	Oryctolagus_cuniculus
ENSMUSG00000043241	Upf2	99	82.772	ENSORLG00000017189	UPF2	100	81.889	Oryzias_latipes
ENSMUSG00000043241	Upf2	99	82.959	ENSORLG00020005969	UPF2	100	81.889	Oryzias_latipes_hni
ENSMUSG00000043241	Upf2	99	82.959	ENSORLG00015005713	UPF2	100	81.889	Oryzias_latipes_hsok
ENSMUSG00000043241	Upf2	99	77.769	ENSOMEG00000023420	UPF2	98	79.203	Oryzias_melastigma
ENSMUSG00000043241	Upf2	100	97.718	ENSOGAG00000005796	UPF2	100	97.718	Otolemur_garnettii
ENSMUSG00000043241	Upf2	100	97.251	ENSOARG00000014587	UPF2	100	97.251	Ovis_aries
ENSMUSG00000043241	Upf2	99	93.505	ENSPPAG00000037953	UPF2	100	94.247	Pan_paniscus
ENSMUSG00000043241	Upf2	100	97.246	ENSPPRG00000000690	UPF2	100	97.246	Panthera_pardus
ENSMUSG00000043241	Upf2	100	97.246	ENSPTIG00000008867	UPF2	100	97.246	Panthera_tigris_altaica
ENSMUSG00000043241	Upf2	100	96.934	ENSPTRG00000002291	UPF2	100	96.934	Pan_troglodytes
ENSMUSG00000043241	Upf2	100	97.091	ENSPANG00000023399	UPF2	100	97.091	Papio_anubis
ENSMUSG00000043241	Upf2	99	82.453	ENSPKIG00000025502	UPF2	100	82.123	Paramormyrops_kingsleyae
ENSMUSG00000043241	Upf2	59	92.032	ENSPSIG00000015158	UPF2	95	92.032	Pelodiscus_sinensis
ENSMUSG00000043241	Upf2	99	82.163	ENSPMGG00000005259	UPF2	100	80.189	Periophthalmus_magnuspinnatus
ENSMUSG00000043241	Upf2	93	97.085	ENSPEMG00000015731	Upf2	99	97.085	Peromyscus_maniculatus_bairdii
ENSMUSG00000043241	Upf2	100	95.122	ENSPCIG00000006656	UPF2	100	95.122	Phascolarctos_cinereus
ENSMUSG00000043241	Upf2	99	83.585	ENSPFOG00000017118	UPF2	100	81.577	Poecilia_formosa
ENSMUSG00000043241	Upf2	99	83.585	ENSPLAG00000005094	UPF2	100	81.577	Poecilia_latipinna
ENSMUSG00000043241	Upf2	99	83.585	ENSPMEG00000017009	UPF2	100	81.577	Poecilia_mexicana
ENSMUSG00000043241	Upf2	99	82.857	ENSPREG00000021880	UPF2	100	81.847	Poecilia_reticulata
ENSMUSG00000043241	Upf2	99	97.714	ENSPPYG00000002089	-	100	98.086	Pongo_abelii
ENSMUSG00000043241	Upf2	92	94.191	ENSPCAG00000000684	UPF2	100	82.769	Procavia_capensis
ENSMUSG00000043241	Upf2	99	94.716	ENSPCOG00000021656	UPF2	100	94.874	Propithecus_coquereli
ENSMUSG00000043241	Upf2	99	97.524	ENSPVAG00000017286	UPF2	100	89.623	Pteropus_vampyrus
ENSMUSG00000043241	Upf2	99	83.902	ENSPNYG00000017096	UPF2	100	80.141	Pundamilia_nyererei
ENSMUSG00000043241	Upf2	100	83.997	ENSPNAG00000009357	UPF2	100	84.231	Pygocentrus_nattereri
ENSMUSG00000043241	Upf2	99	92.689	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSMUSG00000043241	Upf2	99	98.084	ENSRBIG00000037780	UPF2	100	96.293	Rhinopithecus_bieti
ENSMUSG00000043241	Upf2	100	97.168	ENSRROG00000043547	UPF2	100	97.168	Rhinopithecus_roxellana
ENSMUSG00000043241	Upf2	100	96.932	ENSSBOG00000020012	UPF2	100	96.932	Saimiri_boliviensis_boliviensis
ENSMUSG00000043241	Upf2	99	83.585	ENSSFOG00015023788	upf2	100	82.568	Scleropages_formosus
ENSMUSG00000043241	Upf2	99	84.053	ENSSMAG00000007637	UPF2	100	80.310	Scophthalmus_maximus
ENSMUSG00000043241	Upf2	100	83.060	ENSSDUG00000017244	UPF2	99	82.917	Seriola_dumerili
ENSMUSG00000043241	Upf2	99	81.412	ENSSLDG00000016866	UPF2	82	84.267	Seriola_lalandi_dorsalis
ENSMUSG00000043241	Upf2	99	96.190	ENSSARG00000008615	UPF2	100	94.571	Sorex_araneus
ENSMUSG00000043241	Upf2	99	92.366	ENSSPUG00000014544	UPF2	99	89.685	Sphenodon_punctatus
ENSMUSG00000043241	Upf2	99	97.714	ENSSSCG00000011117	-	100	97.929	Sus_scrofa
ENSMUSG00000043241	Upf2	99	96.360	ENSTGUG00000002163	-	100	93.297	Taeniopygia_guttata
ENSMUSG00000043241	Upf2	74	95.663	ENSTGUG00000015714	-	100	96.173	Taeniopygia_guttata
ENSMUSG00000043241	Upf2	99	83.146	ENSTRUG00000007519	UPF2	99	82.059	Takifugu_rubripes
ENSMUSG00000043241	Upf2	99	81.903	ENSTNIG00000004453	UPF2	100	79.283	Tetraodon_nigroviridis
ENSMUSG00000043241	Upf2	93	90.331	ENSTBEG00000012679	UPF2	93	90.331	Tupaia_belangeri
ENSMUSG00000043241	Upf2	100	97.168	ENSTTRG00000016388	UPF2	100	97.168	Tursiops_truncatus
ENSMUSG00000043241	Upf2	95	99.306	ENSUAMG00000023560	UPF2	100	97.540	Ursus_americanus
ENSMUSG00000043241	Upf2	100	97.404	ENSUMAG00000012953	UPF2	95	97.404	Ursus_maritimus
ENSMUSG00000043241	Upf2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSMUSG00000043241	Upf2	100	97.482	ENSVVUG00000006166	UPF2	100	97.482	Vulpes_vulpes
ENSMUSG00000043241	Upf2	99	87.713	ENSXETG00000033103	UPF2	91	88.927	Xenopus_tropicalis
ENSMUSG00000043241	Upf2	99	83.144	ENSXCOG00000011604	UPF2	100	81.235	Xiphophorus_couchianus
ENSMUSG00000043241	Upf2	99	83.208	ENSXMAG00000017209	UPF2	100	81.265	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISO	Process
GO:0001889	liver development	20657840.	IMP	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0006986	response to unfolded protein	-	ISO	Process
GO:0031100	animal organ regeneration	20657840.	IMP	Process
GO:0035145	exon-exon junction complex	21873635.	IBA	Component
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component