EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000043279 (Gene tree)
Gene ID: 384309
Gene Symbol: Trim56
Alias: A130009K11Rik|LOC384309|RNF109
Full Name: tripartite motif-containing 56
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 10566
Position: chr5: 137105644-137116209
Accession: 2685298
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000054384	-	9279	XM_006504441	ENSMUSP00000058109	734 (aa)	XP_006504504	A0A0R4J0Q6
ENSMUST00000152207	-	867	-	ENSMUSP00000117874	212 (aa)	-	D3YVX5

Gene Model

Click here to download ENSMUSG00000043279's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000043279's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000043279	Trim56	100	86.792	ENSG00000169871	TRIM56	100	84.615	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002376	immune system process	-	IEA	Process
GO:0004842	ubiquitin-protein transferase activity	21074459.	IDA	Function
GO:0005515	protein binding	21074459.	IPI	Function
GO:0005737	cytoplasm	21074459.	IDA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0032608	interferon-beta production	21074459.	IMP	Process
GO:0034340	response to type I interferon	21074459.	IDA	Process
GO:0045087	innate immune response	18248090.	IDA	Process
GO:0046597	negative regulation of viral entry into host cell	18248090.	IDA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051607	defense response to virus	21074459.	IMP	Process
GO:0061630	ubiquitin protein ligase activity	21074459.	IDA	Function
GO:0070534	protein K63-linked ubiquitination	21074459.	IDA	Process
GO:1902187	negative regulation of viral release from host cell	18248090.	IDA	Process