EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000043410 (Gene tree)
Gene ID: 330149
Gene Symbol: Hfm1
Alias: A330009G12Rik|LOC381663|Mer3|Sec63d1
Full Name: HFM1%2C ATP-dependent DNA helicase homolog
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 86130 bases
Position: chr5:106840192-106926321
Accession: 3036246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108310	ResIII	PF04851.15	4.6e-11	1	1
ENSMUSP00000112590	ResIII	PF04851.15	4.6e-11	1	1
ENSMUSP00000142727	ResIII	PF04851.15	3.8e-08	1	1
ENSMUSP00000108310	DEAD	PF00270.29	1e-24	1	1
ENSMUSP00000112590	DEAD	PF00270.29	1e-24	1	1
ENSMUSP00000142727	DEAD	PF00270.29	2.9e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000134292	-	1959	-	-	- (aa)	-	-
ENSMUST00000117588	-	4870	XM_011249486	ENSMUSP00000112590	1434 (aa)	XP_011247788	D3Z4R1
ENSMUST00000155171	-	1928	-	ENSMUSP00000118674	626 (aa)	-	F6XQ35
ENSMUST00000148686	-	1440	-	ENSMUSP00000120112	57 (aa)	-	D6RJK3
ENSMUST00000112690	-	5018	XM_006535015	ENSMUSP00000108310	1434 (aa)	XP_006535078	D3Z4R1
ENSMUST00000200249	-	1381	-	ENSMUSP00000142727	410 (aa)	-	A0A0G2JED3
ENSMUST00000148495	-	2613	-	ENSMUSP00000122169	49 (aa)	-	F7C082

Gene Model

Click here to download ENSMUSG00000043410's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000043410's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000043410	Hfm1	59	32.442	ENSMUSG00000003660	Snrnp200	76	32.173
ENSMUSG00000043410	Hfm1	51	35.940	ENSMUSG00000038774	Ascc3	62	35.940

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000043410	Hfm1	100	76.773	ENSG00000162669	HFM1	100	76.773	Homo_sapiens
ENSMUSG00000043410	Hfm1	58	64.671	ENSAPOG00000005304	hfm1	94	64.671	Acanthochromis_polyacanthus
ENSMUSG00000043410	Hfm1	100	76.372	ENSAMEG00000000432	HFM1	100	76.372	Ailuropoda_melanoleuca
ENSMUSG00000043410	Hfm1	71	58.196	ENSACIG00000021553	hfm1	91	58.196	Amphilophus_citrinellus
ENSMUSG00000043410	Hfm1	58	64.826	ENSAOCG00000022839	hfm1	96	67.424	Amphiprion_ocellaris
ENSMUSG00000043410	Hfm1	55	67.722	ENSAPEG00000014316	hfm1	96	67.722	Amphiprion_percula
ENSMUSG00000043410	Hfm1	67	62.436	ENSATEG00000019181	hfm1	80	61.900	Anabas_testudineus
ENSMUSG00000043410	Hfm1	100	57.729	ENSAPLG00000013639	HFM1	100	57.729	Anas_platyrhynchos
ENSMUSG00000043410	Hfm1	100	74.931	ENSANAG00000029513	HFM1	100	74.931	Aotus_nancymaae
ENSMUSG00000043410	Hfm1	65	61.522	ENSACLG00000009033	hfm1	97	63.365	Astatotilapia_calliptera
ENSMUSG00000043410	Hfm1	85	54.452	ENSAMXG00000006108	hfm1	83	54.452	Astyanax_mexicanus
ENSMUSG00000043410	Hfm1	100	74.861	ENSBTAG00000020856	HFM1	100	74.861	Bos_taurus
ENSMUSG00000043410	Hfm1	100	75.452	ENSCJAG00000001843	HFM1	100	75.452	Callithrix_jacchus
ENSMUSG00000043410	Hfm1	100	75.678	ENSCAFG00000020187	HFM1	100	75.678	Canis_familiaris
ENSMUSG00000043410	Hfm1	100	69.324	ENSCAFG00020013595	-	100	70.362	Canis_lupus_dingo
ENSMUSG00000043410	Hfm1	99	62.103	ENSCHIG00000018623	-	95	64.130	Capra_hircus
ENSMUSG00000043410	Hfm1	100	76.111	ENSTSYG00000014250	HFM1	100	76.111	Carlito_syrichta
ENSMUSG00000043410	Hfm1	99	73.937	ENSCPOG00000007421	HFM1	99	73.937	Cavia_porcellus
ENSMUSG00000043410	Hfm1	100	75.591	ENSCCAG00000033206	HFM1	100	75.591	Cebus_capucinus
ENSMUSG00000043410	Hfm1	100	76.704	ENSCATG00000030987	HFM1	100	76.704	Cercocebus_atys
ENSMUSG00000043410	Hfm1	100	74.189	ENSCLAG00000005173	HFM1	99	74.189	Chinchilla_lanigera
ENSMUSG00000043410	Hfm1	68	88.158	ENSCHOG00000011824	-	76	88.158	Choloepus_hoffmanni
ENSMUSG00000043410	Hfm1	100	73.123	ENSCANG00000034052	-	99	73.561	Colobus_angolensis_palliatus
ENSMUSG00000043410	Hfm1	100	80.609	ENSCGRG00001016995	Hfm1	100	80.609	Cricetulus_griseus_chok1gshd
ENSMUSG00000043410	Hfm1	100	85.167	ENSCGRG00000017181	Hfm1	100	85.167	Cricetulus_griseus_crigri
ENSMUSG00000043410	Hfm1	71	57.703	ENSCSEG00000017659	hfm1	94	57.799	Cynoglossus_semilaevis
ENSMUSG00000043410	Hfm1	50	67.416	ENSCVAG00000005075	hfm1	86	67.416	Cyprinodon_variegatus
ENSMUSG00000043410	Hfm1	58	65.513	ENSDARG00000104288	hfm1	76	65.513	Danio_rerio
ENSMUSG00000043410	Hfm1	100	71.496	ENSDNOG00000004776	HFM1	100	71.496	Dasypus_novemcinctus
ENSMUSG00000043410	Hfm1	100	73.521	ENSDORG00000014661	Hfm1	100	73.521	Dipodomys_ordii
ENSMUSG00000043410	Hfm1	100	70.048	ENSEASG00005015424	HFM1	98	80.117	Equus_asinus_asinus
ENSMUSG00000043410	Hfm1	100	74.882	ENSECAG00000024039	HFM1	100	74.882	Equus_caballus
ENSMUSG00000043410	Hfm1	63	64.978	ENSELUG00000018944	hfm1	97	64.978	Esox_lucius
ENSMUSG00000043410	Hfm1	100	76.667	ENSFCAG00000029116	HFM1	100	76.667	Felis_catus
ENSMUSG00000043410	Hfm1	100	57.356	ENSFALG00000001781	HFM1	100	57.601	Ficedula_albicollis
ENSMUSG00000043410	Hfm1	100	73.235	ENSFDAG00000020816	HFM1	100	73.235	Fukomys_damarensis
ENSMUSG00000043410	Hfm1	66	59.499	ENSGMOG00000017436	hfm1	99	59.499	Gadus_morhua
ENSMUSG00000043410	Hfm1	71	59.787	ENSGAFG00000018093	hfm1	93	64.826	Gambusia_affinis
ENSMUSG00000043410	Hfm1	66	60.350	ENSGACG00000015686	hfm1	100	60.350	Gasterosteus_aculeatus
ENSMUSG00000043410	Hfm1	100	76.704	ENSGGOG00000038524	HFM1	100	76.704	Gorilla_gorilla
ENSMUSG00000043410	Hfm1	65	62.446	ENSHBUG00000007309	hfm1	95	58.892	Haplochromis_burtoni
ENSMUSG00000043410	Hfm1	100	71.046	ENSHGLG00000007780	-	100	72.591	Heterocephalus_glaber_female
ENSMUSG00000043410	Hfm1	100	69.471	ENSHGLG00100019217	-	100	71.186	Heterocephalus_glaber_male
ENSMUSG00000043410	Hfm1	57	62.577	ENSHCOG00000019632	hfm1	97	62.577	Hippocampus_comes
ENSMUSG00000043410	Hfm1	66	63.915	ENSIPUG00000017020	hfm1	92	64.650	Ictalurus_punctatus
ENSMUSG00000043410	Hfm1	100	71.533	ENSSTOG00000008477	-	100	72.163	Ictidomys_tridecemlineatus
ENSMUSG00000043410	Hfm1	100	75.070	ENSJJAG00000017198	Hfm1	100	75.070	Jaculus_jaculus
ENSMUSG00000043410	Hfm1	62	61.019	ENSKMAG00000002282	hfm1	91	61.019	Kryptolebias_marmoratus
ENSMUSG00000043410	Hfm1	71	57.605	ENSLBEG00000006759	hfm1	96	63.365	Labrus_bergylta
ENSMUSG00000043410	Hfm1	71	63.868	ENSLACG00000010698	HFM1	100	64.057	Latimeria_chalumnae
ENSMUSG00000043410	Hfm1	73	62.370	ENSLOCG00000004931	hfm1	97	62.464	Lepisosteus_oculatus
ENSMUSG00000043410	Hfm1	52	83.984	ENSLAFG00000015903	-	99	83.984	Loxodonta_africana
ENSMUSG00000043410	Hfm1	100	74.359	ENSMFAG00000003649	HFM1	100	74.359	Macaca_fascicularis
ENSMUSG00000043410	Hfm1	100	76.634	ENSMMUG00000006819	HFM1	100	76.634	Macaca_mulatta
ENSMUSG00000043410	Hfm1	100	72.639	ENSMNEG00000039833	-	99	73.134	Macaca_nemestrina
ENSMUSG00000043410	Hfm1	100	73.608	ENSMLEG00000027571	-	99	73.987	Mandrillus_leucophaeus
ENSMUSG00000043410	Hfm1	55	67.754	ENSMAMG00000004623	hfm1	97	64.933	Mastacembelus_armatus
ENSMUSG00000043410	Hfm1	65	61.522	ENSMZEG00005004679	hfm1	97	63.365	Maylandia_zebra
ENSMUSG00000043410	Hfm1	100	47.765	ENSMGAG00000008437	HFM1	96	76.744	Meleagris_gallopavo
ENSMUSG00000043410	Hfm1	100	84.482	ENSMAUG00000018858	Hfm1	100	84.482	Mesocricetus_auratus
ENSMUSG00000043410	Hfm1	100	76.720	ENSMICG00000037935	HFM1	100	76.720	Microcebus_murinus
ENSMUSG00000043410	Hfm1	100	82.578	ENSMOCG00000014812	Hfm1	100	82.578	Microtus_ochrogaster
ENSMUSG00000043410	Hfm1	62	62.177	ENSMMOG00000006148	hfm1	96	63.066	Mola_mola
ENSMUSG00000043410	Hfm1	65	62.527	ENSMALG00000002401	hfm1	96	63.594	Monopterus_albus
ENSMUSG00000043410	Hfm1	95	96.104	MGP_CAROLIEiJ_G0027496	Hfm1	100	96.104	Mus_caroli
ENSMUSG00000043410	Hfm1	100	94.770	MGP_PahariEiJ_G0017268	Hfm1	100	94.770	Mus_pahari
ENSMUSG00000043410	Hfm1	100	98.466	MGP_SPRETEiJ_G0028495	Hfm1	100	98.466	Mus_spretus
ENSMUSG00000043410	Hfm1	100	72.997	ENSMPUG00000004594	HFM1	100	72.997	Mustela_putorius_furo
ENSMUSG00000043410	Hfm1	100	74.202	ENSMLUG00000010200	HFM1	100	74.202	Myotis_lucifugus
ENSMUSG00000043410	Hfm1	68	56.997	ENSNBRG00000002910	hfm1	97	63.471	Neolamprologus_brichardi
ENSMUSG00000043410	Hfm1	100	73.527	ENSNLEG00000010285	HFM1	100	73.527	Nomascus_leucogenys
ENSMUSG00000043410	Hfm1	100	50.121	ENSMEUG00000015788	HFM1	84	65.130	Notamacropus_eugenii
ENSMUSG00000043410	Hfm1	84	72.360	ENSOPRG00000013916	HFM1	84	72.360	Ochotona_princeps
ENSMUSG00000043410	Hfm1	100	70.073	ENSODEG00000006243	-	100	71.306	Octodon_degus
ENSMUSG00000043410	Hfm1	71	60.251	ENSONIG00000010590	hfm1	99	60.134	Oreochromis_niloticus
ENSMUSG00000043410	Hfm1	94	64.175	ENSOCUG00000010974	-	95	64.175	Oryctolagus_cuniculus
ENSMUSG00000043410	Hfm1	57	63.916	ENSORLG00000026844	hfm1	99	63.916	Oryzias_latipes
ENSMUSG00000043410	Hfm1	97	38.995	ENSORLG00020002951	hfm1	96	48.130	Oryzias_latipes_hni
ENSMUSG00000043410	Hfm1	72	57.880	ENSOMEG00000016474	hfm1	84	52.729	Oryzias_melastigma
ENSMUSG00000043410	Hfm1	100	71.186	ENSOGAG00000032369	HFM1	100	78.519	Otolemur_garnettii
ENSMUSG00000043410	Hfm1	100	75.087	ENSOARG00000015812	HFM1	100	75.087	Ovis_aries
ENSMUSG00000043410	Hfm1	100	73.850	ENSPPAG00000024582	HFM1	100	79.050	Pan_paniscus
ENSMUSG00000043410	Hfm1	100	76.806	ENSPPRG00000003270	HFM1	100	76.806	Panthera_pardus
ENSMUSG00000043410	Hfm1	100	76.667	ENSPTIG00000018881	HFM1	100	76.667	Panthera_tigris_altaica
ENSMUSG00000043410	Hfm1	100	76.843	ENSPTRG00000000948	HFM1	100	76.843	Pan_troglodytes
ENSMUSG00000043410	Hfm1	100	76.634	ENSPANG00000009838	HFM1	100	76.634	Papio_anubis
ENSMUSG00000043410	Hfm1	62	65.579	ENSPKIG00000003810	hfm1	95	66.344	Paramormyrops_kingsleyae
ENSMUSG00000043410	Hfm1	58	64.407	ENSPMGG00000011059	hfm1	100	64.407	Periophthalmus_magnuspinnatus
ENSMUSG00000043410	Hfm1	100	86.829	ENSPEMG00000022852	Hfm1	100	86.829	Peromyscus_maniculatus_bairdii
ENSMUSG00000043410	Hfm1	100	63.758	ENSPCIG00000014233	HFM1	100	63.758	Phascolarctos_cinereus
ENSMUSG00000043410	Hfm1	70	59.886	ENSPFOG00000017194	hfm1	99	60.266	Poecilia_formosa
ENSMUSG00000043410	Hfm1	71	61.078	ENSPLAG00000000571	hfm1	92	61.078	Poecilia_latipinna
ENSMUSG00000043410	Hfm1	71	60.933	ENSPMEG00000019475	hfm1	92	60.933	Poecilia_mexicana
ENSMUSG00000043410	Hfm1	71	60.728	ENSPREG00000007803	hfm1	94	63.756	Poecilia_reticulata
ENSMUSG00000043410	Hfm1	100	76.426	ENSPPYG00000001163	HFM1	100	76.426	Pongo_abelii
ENSMUSG00000043410	Hfm1	68	79.512	ENSPCAG00000004289	-	68	79.512	Procavia_capensis
ENSMUSG00000043410	Hfm1	99	58.435	ENSPCOG00000026252	-	100	59.701	Propithecus_coquereli
ENSMUSG00000043410	Hfm1	100	68.403	ENSPVAG00000009713	HFM1	100	68.403	Pteropus_vampyrus
ENSMUSG00000043410	Hfm1	65	61.415	ENSPNYG00000001795	hfm1	97	63.365	Pundamilia_nyererei
ENSMUSG00000043410	Hfm1	62	62.747	ENSPNAG00000010865	hfm1	90	62.747	Pygocentrus_nattereri
ENSMUSG00000043410	Hfm1	100	88.563	ENSRNOG00000023299	Hfm1	100	88.563	Rattus_norvegicus
ENSMUSG00000043410	Hfm1	100	72.639	ENSRBIG00000033899	-	99	72.921	Rhinopithecus_bieti
ENSMUSG00000043410	Hfm1	100	76.495	ENSRROG00000045569	HFM1	100	76.495	Rhinopithecus_roxellana
ENSMUSG00000043410	Hfm1	100	73.992	ENSSBOG00000027456	HFM1	100	73.992	Saimiri_boliviensis_boliviensis
ENSMUSG00000043410	Hfm1	99	53.606	ENSSHAG00000014616	-	98	67.514	Sarcophilus_harrisii
ENSMUSG00000043410	Hfm1	100	42.043	ENSSFOG00015020129	hfm1	100	48.375	Scleropages_formosus
ENSMUSG00000043410	Hfm1	62	63.799	ENSSMAG00000006907	hfm1	87	63.799	Scophthalmus_maximus
ENSMUSG00000043410	Hfm1	58	65.496	ENSSDUG00000011424	hfm1	93	65.496	Seriola_dumerili
ENSMUSG00000043410	Hfm1	58	65.621	ENSSLDG00000016386	hfm1	92	65.621	Seriola_lalandi_dorsalis
ENSMUSG00000043410	Hfm1	94	58.462	ENSSARG00000009598	-	99	58.462	Sorex_araneus
ENSMUSG00000043410	Hfm1	74	90.071	ENSSPUG00000003380	-	89	85.787	Sphenodon_punctatus
ENSMUSG00000043410	Hfm1	69	57.460	ENSSPAG00000001023	hfm1	94	64.946	Stegastes_partitus
ENSMUSG00000043410	Hfm1	100	72.458	ENSSSCG00000006912	HFM1	99	74.426	Sus_scrofa
ENSMUSG00000043410	Hfm1	66	73.881	ENSTGUG00000006172	HFM1	100	73.881	Taeniopygia_guttata
ENSMUSG00000043410	Hfm1	94	67.010	ENSTBEG00000017533	-	99	67.010	Tupaia_belangeri
ENSMUSG00000043410	Hfm1	100	73.296	ENSTTRG00000013933	HFM1	100	73.296	Tursiops_truncatus
ENSMUSG00000043410	Hfm1	100	59.277	ENSUAMG00000008754	-	99	63.609	Ursus_americanus
ENSMUSG00000043410	Hfm1	100	68.841	ENSUMAG00000001345	-	100	70.000	Ursus_maritimus
ENSMUSG00000043410	Hfm1	93	76.627	ENSVPAG00000011331	HFM1	93	76.627	Vicugna_pacos
ENSMUSG00000043410	Hfm1	100	68.357	ENSVVUG00000020760	HFM1	99	77.992	Vulpes_vulpes
ENSMUSG00000043410	Hfm1	58	65.375	ENSXMAG00000004178	hfm1	92	65.375	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000712	resolution of meiotic recombination intermediates	23555294.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0007283	spermatogenesis	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030154	cell differentiation	-	IEA	Process
GO:0048477	oogenesis	-	IEA	Process
GO:0051321	meiotic cell cycle	-	IEA	Process