EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000044149 (Gene tree)
Gene ID: 77286
Gene Symbol: Nkrf
Alias: 9430034D17Rik
Full Name: NF-kappaB repressing factor
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 15360 bases
Position: chrX:36887540-36902899
Accession: 1924536
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000061546	R3H	PF01424.22	2.7e-12	1	1
ENSMUSP00000061546	G-patch	PF01585.23	1.5e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000057093	-	3268	XM_006541409	ENSMUSP00000061546	690 (aa)	XP_006541472	Q8BY02

Gene Model

Click here to download ENSMUSG00000044149's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000044149's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000044149	Nkrf	100	94.783	ENSG00000186416	NKRF	100	94.783	Homo_sapiens
ENSMUSG00000044149	Nkrf	92	51.286	ENSAPOG00000012969	nkrf	84	51.801	Acanthochromis_polyacanthus
ENSMUSG00000044149	Nkrf	100	92.029	ENSAMEG00000000152	NKRF	100	92.029	Ailuropoda_melanoleuca
ENSMUSG00000044149	Nkrf	90	53.286	ENSACIG00000013701	nkrf	97	45.844	Amphilophus_citrinellus
ENSMUSG00000044149	Nkrf	93	53.158	ENSAOCG00000011327	nkrf	96	45.849	Amphiprion_ocellaris
ENSMUSG00000044149	Nkrf	92	51.635	ENSAPEG00000005444	nkrf	99	45.259	Amphiprion_percula
ENSMUSG00000044149	Nkrf	85	55.492	ENSATEG00000018834	nkrf	81	52.817	Anabas_testudineus
ENSMUSG00000044149	Nkrf	100	67.994	ENSAPLG00000012272	NKRF	99	67.994	Anas_platyrhynchos
ENSMUSG00000044149	Nkrf	99	62.128	ENSACAG00000012140	NKRF	99	62.128	Anolis_carolinensis
ENSMUSG00000044149	Nkrf	100	94.348	ENSANAG00000025604	NKRF	98	94.348	Aotus_nancymaae
ENSMUSG00000044149	Nkrf	82	49.588	ENSACLG00000001752	nkrf	72	49.753	Astatotilapia_calliptera
ENSMUSG00000044149	Nkrf	76	51.119	ENSAMXG00000000131	nkrf	69	50.560	Astyanax_mexicanus
ENSMUSG00000044149	Nkrf	100	93.043	ENSBTAG00000045744	NKRF	98	93.043	Bos_taurus
ENSMUSG00000044149	Nkrf	100	94.783	ENSCJAG00000005088	NKRF	88	94.783	Callithrix_jacchus
ENSMUSG00000044149	Nkrf	100	94.493	ENSCAFG00000018411	NKRF	88	94.493	Canis_familiaris
ENSMUSG00000044149	Nkrf	100	94.493	ENSCAFG00020004162	NKRF	100	94.493	Canis_lupus_dingo
ENSMUSG00000044149	Nkrf	100	93.478	ENSCHIG00000008436	NKRF	100	93.478	Capra_hircus
ENSMUSG00000044149	Nkrf	100	93.768	ENSTSYG00000000890	NKRF	100	93.768	Carlito_syrichta
ENSMUSG00000044149	Nkrf	94	92.485	ENSCAPG00000011069	NKRF	99	92.485	Cavia_aperea
ENSMUSG00000044149	Nkrf	100	95.072	ENSCPOG00000011912	NKRF	100	95.072	Cavia_porcellus
ENSMUSG00000044149	Nkrf	100	94.783	ENSCCAG00000021029	NKRF	100	94.783	Cebus_capucinus
ENSMUSG00000044149	Nkrf	100	94.928	ENSCATG00000031763	NKRF	98	94.928	Cercocebus_atys
ENSMUSG00000044149	Nkrf	100	95.217	ENSCLAG00000002890	NKRF	100	95.217	Chinchilla_lanigera
ENSMUSG00000044149	Nkrf	100	94.783	ENSCSAG00000018353	NKRF	88	94.783	Chlorocebus_sabaeus
ENSMUSG00000044149	Nkrf	100	69.516	ENSCPBG00000020704	NKRF	88	69.516	Chrysemys_picta_bellii
ENSMUSG00000044149	Nkrf	100	94.928	ENSCANG00000028878	NKRF	98	94.928	Colobus_angolensis_palliatus
ENSMUSG00000044149	Nkrf	100	96.957	ENSCGRG00001001105	Nkrf	88	96.957	Cricetulus_griseus_chok1gshd
ENSMUSG00000044149	Nkrf	100	96.957	ENSCGRG00000011374	Nkrf	100	96.957	Cricetulus_griseus_crigri
ENSMUSG00000044149	Nkrf	79	52.050	ENSCSEG00000002024	nkrf	70	52.406	Cynoglossus_semilaevis
ENSMUSG00000044149	Nkrf	98	44.286	ENSCVAG00000004926	nkrf	99	44.286	Cyprinodon_variegatus
ENSMUSG00000044149	Nkrf	87	53.968	ENSDARG00000100536	nkrf	72	50.725	Danio_rerio
ENSMUSG00000044149	Nkrf	100	93.623	ENSDNOG00000031378	NKRF	88	93.623	Dasypus_novemcinctus
ENSMUSG00000044149	Nkrf	100	95.217	ENSDORG00000024123	Nkrf	100	95.217	Dipodomys_ordii
ENSMUSG00000044149	Nkrf	71	95.882	ENSETEG00000001275	-	55	95.882	Echinops_telfairi
ENSMUSG00000044149	Nkrf	90	35.448	ENSEBUG00000012286	NKRF	98	35.448	Eptatretus_burgeri
ENSMUSG00000044149	Nkrf	100	94.493	ENSEASG00005012904	NKRF	88	94.493	Equus_asinus_asinus
ENSMUSG00000044149	Nkrf	100	94.493	ENSECAG00000022495	NKRF	88	94.493	Equus_caballus
ENSMUSG00000044149	Nkrf	100	90.580	ENSEEUG00000007576	NKRF	100	90.580	Erinaceus_europaeus
ENSMUSG00000044149	Nkrf	86	54.688	ENSELUG00000020577	nkrf	79	51.134	Esox_lucius
ENSMUSG00000044149	Nkrf	100	94.638	ENSFCAG00000008742	NKRF	98	94.638	Felis_catus
ENSMUSG00000044149	Nkrf	100	66.241	ENSFALG00000001584	NKRF	92	66.383	Ficedula_albicollis
ENSMUSG00000044149	Nkrf	100	94.783	ENSFDAG00000014857	NKRF	90	94.783	Fukomys_damarensis
ENSMUSG00000044149	Nkrf	90	52.122	ENSFHEG00000017996	nkrf	82	52.122	Fundulus_heteroclitus
ENSMUSG00000044149	Nkrf	87	54.389	ENSGMOG00000001688	nkrf	99	46.164	Gadus_morhua
ENSMUSG00000044149	Nkrf	100	69.024	ENSGALG00000008645	NKRF	91	69.034	Gallus_gallus
ENSMUSG00000044149	Nkrf	77	53.114	ENSGAFG00000000966	nkrf	78	52.844	Gambusia_affinis
ENSMUSG00000044149	Nkrf	99	45.953	ENSGACG00000017457	nkrf	97	46.016	Gasterosteus_aculeatus
ENSMUSG00000044149	Nkrf	100	69.801	ENSGAGG00000001146	NKRF	100	69.801	Gopherus_agassizii
ENSMUSG00000044149	Nkrf	100	94.638	ENSGGOG00000006862	NKRF	100	94.638	Gorilla_gorilla
ENSMUSG00000044149	Nkrf	91	59.766	ENSHBUG00000017543	nkrf	82	49.508	Haplochromis_burtoni
ENSMUSG00000044149	Nkrf	100	94.058	ENSHGLG00000013935	NKRF	100	94.058	Heterocephalus_glaber_female
ENSMUSG00000044149	Nkrf	100	94.058	ENSHGLG00100004379	NKRF	100	94.058	Heterocephalus_glaber_male
ENSMUSG00000044149	Nkrf	98	46.047	ENSHCOG00000017066	nkrf	86	48.130	Hippocampus_comes
ENSMUSG00000044149	Nkrf	99	44.487	ENSIPUG00000022475	nkrf	92	44.659	Ictalurus_punctatus
ENSMUSG00000044149	Nkrf	100	94.942	ENSSTOG00000020483	NKRF	100	95.087	Ictidomys_tridecemlineatus
ENSMUSG00000044149	Nkrf	100	94.653	ENSJJAG00000020550	Nkrf	100	94.942	Jaculus_jaculus
ENSMUSG00000044149	Nkrf	92	52.622	ENSKMAG00000020188	nkrf	85	53.147	Kryptolebias_marmoratus
ENSMUSG00000044149	Nkrf	90	50.777	ENSLBEG00000028681	nkrf	77	50.777	Labrus_bergylta
ENSMUSG00000044149	Nkrf	99	51.413	ENSLACG00000009612	NKRF	90	51.887	Latimeria_chalumnae
ENSMUSG00000044149	Nkrf	100	46.164	ENSLOCG00000015232	nkrf	90	46.296	Lepisosteus_oculatus
ENSMUSG00000044149	Nkrf	100	93.768	ENSLAFG00000027138	NKRF	100	93.768	Loxodonta_africana
ENSMUSG00000044149	Nkrf	100	94.783	ENSMFAG00000031196	NKRF	100	94.783	Macaca_fascicularis
ENSMUSG00000044149	Nkrf	100	94.638	ENSMMUG00000022670	NKRF	88	94.638	Macaca_mulatta
ENSMUSG00000044149	Nkrf	100	94.783	ENSMNEG00000027985	NKRF	98	94.783	Macaca_nemestrina
ENSMUSG00000044149	Nkrf	100	94.928	ENSMLEG00000041865	NKRF	100	94.928	Mandrillus_leucophaeus
ENSMUSG00000044149	Nkrf	90	60.078	ENSMAMG00000019975	nkrf	99	46.986	Mastacembelus_armatus
ENSMUSG00000044149	Nkrf	91	49.588	ENSMZEG00005007953	nkrf	82	49.918	Maylandia_zebra
ENSMUSG00000044149	Nkrf	100	68.458	ENSMGAG00000007788	NKRF	99	68.458	Meleagris_gallopavo
ENSMUSG00000044149	Nkrf	100	96.812	ENSMAUG00000021303	Nkrf	100	96.812	Mesocricetus_auratus
ENSMUSG00000044149	Nkrf	100	93.768	ENSMICG00000004220	NKRF	98	93.768	Microcebus_murinus
ENSMUSG00000044149	Nkrf	100	96.667	ENSMOCG00000000942	Nkrf	100	96.667	Microtus_ochrogaster
ENSMUSG00000044149	Nkrf	99	44.048	ENSMMOG00000004175	nkrf	99	44.238	Mola_mola
ENSMUSG00000044149	Nkrf	99	66.236	ENSMODG00000024032	-	99	66.236	Monodelphis_domestica
ENSMUSG00000044149	Nkrf	90	53.546	ENSMALG00000007869	NF-kb	81	52.332	Monopterus_albus
ENSMUSG00000044149	Nkrf	100	99.420	MGP_CAROLIEiJ_G0032995	Nkrf	100	99.420	Mus_caroli
ENSMUSG00000044149	Nkrf	100	98.986	MGP_PahariEiJ_G0031539	Nkrf	100	98.986	Mus_pahari
ENSMUSG00000044149	Nkrf	100	99.710	MGP_SPRETEiJ_G0034148	Nkrf	100	99.710	Mus_spretus
ENSMUSG00000044149	Nkrf	100	92.899	ENSMPUG00000001548	NKRF	88	92.899	Mustela_putorius_furo
ENSMUSG00000044149	Nkrf	100	92.909	ENSMLUG00000005621	NKRF	100	92.909	Myotis_lucifugus
ENSMUSG00000044149	Nkrf	100	94.348	ENSNGAG00000023851	Nkrf	100	94.348	Nannospalax_galili
ENSMUSG00000044149	Nkrf	91	53.229	ENSNBRG00000011707	nkrf	81	53.229	Neolamprologus_brichardi
ENSMUSG00000044149	Nkrf	100	94.638	ENSNLEG00000034548	NKRF	98	94.638	Nomascus_leucogenys
ENSMUSG00000044149	Nkrf	100	72.977	ENSMEUG00000003028	NKRF	100	72.977	Notamacropus_eugenii
ENSMUSG00000044149	Nkrf	94	94.624	ENSOPRG00000016532	-	100	94.624	Ochotona_princeps
ENSMUSG00000044149	Nkrf	100	95.797	ENSODEG00000003502	NKRF	100	95.797	Octodon_degus
ENSMUSG00000044149	Nkrf	91	53.054	ENSONIG00000002526	nkrf	81	53.054	Oreochromis_niloticus
ENSMUSG00000044149	Nkrf	52	80.415	ENSOANG00000001806	-	100	80.415	Ornithorhynchus_anatinus
ENSMUSG00000044149	Nkrf	100	74.000	ENSOANG00000002598	-	100	74.282	Ornithorhynchus_anatinus
ENSMUSG00000044149	Nkrf	92	67.707	ENSOANG00000013932	-	99	67.707	Ornithorhynchus_anatinus
ENSMUSG00000044149	Nkrf	100	94.203	ENSOCUG00000016741	NKRF	100	94.203	Oryctolagus_cuniculus
ENSMUSG00000044149	Nkrf	94	50.168	ENSORLG00000022867	nkrf	99	43.517	Oryzias_latipes
ENSMUSG00000044149	Nkrf	94	50.673	ENSORLG00020003902	nkrf	99	43.934	Oryzias_latipes_hni
ENSMUSG00000044149	Nkrf	94	50.337	ENSORLG00015013035	nkrf	99	43.517	Oryzias_latipes_hsok
ENSMUSG00000044149	Nkrf	91	52.014	ENSOMEG00000014617	nkrf	99	44.174	Oryzias_melastigma
ENSMUSG00000044149	Nkrf	100	93.768	ENSOGAG00000009703	NKRF	92	93.768	Otolemur_garnettii
ENSMUSG00000044149	Nkrf	100	93.333	ENSOARG00000016167	NKRF	100	93.333	Ovis_aries
ENSMUSG00000044149	Nkrf	100	94.783	ENSPPAG00000002315	NKRF	100	94.783	Pan_paniscus
ENSMUSG00000044149	Nkrf	100	94.493	ENSPPRG00000023645	NKRF	100	94.493	Panthera_pardus
ENSMUSG00000044149	Nkrf	100	94.493	ENSPTIG00000015381	NKRF	100	94.493	Panthera_tigris_altaica
ENSMUSG00000044149	Nkrf	100	94.783	ENSPTRG00000022226	NKRF	100	94.783	Pan_troglodytes
ENSMUSG00000044149	Nkrf	100	94.928	ENSPANG00000010949	NKRF	98	94.928	Papio_anubis
ENSMUSG00000044149	Nkrf	99	37.827	ENSPKIG00000013989	NKRF	97	38.514	Paramormyrops_kingsleyae
ENSMUSG00000044149	Nkrf	93	52.984	ENSPKIG00000019002	nkrf	85	52.984	Paramormyrops_kingsleyae
ENSMUSG00000044149	Nkrf	100	67.602	ENSPSIG00000006177	NKRF	95	68.064	Pelodiscus_sinensis
ENSMUSG00000044149	Nkrf	96	44.536	ENSPMGG00000012086	nkrf	97	44.536	Periophthalmus_magnuspinnatus
ENSMUSG00000044149	Nkrf	88	52.305	ENSPLAG00000019829	nkrf	81	52.305	Poecilia_latipinna
ENSMUSG00000044149	Nkrf	90	52.305	ENSPMEG00000023417	nkrf	81	52.305	Poecilia_mexicana
ENSMUSG00000044149	Nkrf	88	52.398	ENSPREG00000012340	nkrf	80	52.575	Poecilia_reticulata
ENSMUSG00000044149	Nkrf	100	94.638	ENSPPYG00000020672	NKRF	88	94.638	Pongo_abelii
ENSMUSG00000044149	Nkrf	100	94.203	ENSPCOG00000026266	NKRF	100	94.203	Propithecus_coquereli
ENSMUSG00000044149	Nkrf	97	93.452	ENSPVAG00000003266	NKRF	100	93.452	Pteropus_vampyrus
ENSMUSG00000044149	Nkrf	91	59.766	ENSPNYG00000009655	nkrf	82	49.425	Pundamilia_nyererei
ENSMUSG00000044149	Nkrf	92	50.507	ENSPNAG00000018967	nkrf	81	51.182	Pygocentrus_nattereri
ENSMUSG00000044149	Nkrf	100	95.072	ENSRBIG00000033103	NKRF	98	95.072	Rhinopithecus_bieti
ENSMUSG00000044149	Nkrf	100	95.072	ENSRROG00000034488	NKRF	100	95.072	Rhinopithecus_roxellana
ENSMUSG00000044149	Nkrf	100	94.638	ENSSBOG00000021175	NKRF	100	94.638	Saimiri_boliviensis_boliviensis
ENSMUSG00000044149	Nkrf	100	73.121	ENSSHAG00000006903	-	100	73.121	Sarcophilus_harrisii
ENSMUSG00000044149	Nkrf	99	65.706	ENSSHAG00000006028	-	99	65.706	Sarcophilus_harrisii
ENSMUSG00000044149	Nkrf	73	68.713	ENSSHAG00000005164	-	100	68.713	Sarcophilus_harrisii
ENSMUSG00000044149	Nkrf	89	53.501	ENSSFOG00015005460	nkrf	68	53.680	Scleropages_formosus
ENSMUSG00000044149	Nkrf	99	44.828	ENSSFOG00015010898	NKRF	90	44.952	Scleropages_formosus
ENSMUSG00000044149	Nkrf	84	53.370	ENSSMAG00000012780	nkrf	99	44.654	Scophthalmus_maximus
ENSMUSG00000044149	Nkrf	85	53.552	ENSSDUG00000005559	nkrf	80	51.973	Seriola_dumerili
ENSMUSG00000044149	Nkrf	85	53.650	ENSSLDG00000003347	nkrf	80	52.062	Seriola_lalandi_dorsalis
ENSMUSG00000044149	Nkrf	99	64.366	ENSSPUG00000013178	NKRF	90	64.366	Sphenodon_punctatus
ENSMUSG00000044149	Nkrf	99	51.100	ENSSPAG00000010145	nkrf	99	45.169	Stegastes_partitus
ENSMUSG00000044149	Nkrf	100	94.493	ENSSSCG00000012620	NKRF	88	94.493	Sus_scrofa
ENSMUSG00000044149	Nkrf	78	77.612	ENSTGUG00000003354	-	100	77.612	Taeniopygia_guttata
ENSMUSG00000044149	Nkrf	100	67.816	ENSTGUG00000003356	-	100	67.723	Taeniopygia_guttata
ENSMUSG00000044149	Nkrf	76	53.259	ENSTRUG00000023782	nkrf	70	53.259	Takifugu_rubripes
ENSMUSG00000044149	Nkrf	99	46.505	ENSTNIG00000015760	nkrf	99	46.505	Tetraodon_nigroviridis
ENSMUSG00000044149	Nkrf	100	85.652	ENSTBEG00000017226	NKRF	99	85.652	Tupaia_belangeri
ENSMUSG00000044149	Nkrf	99	94.298	ENSTTRG00000013108	NKRF	100	94.298	Tursiops_truncatus
ENSMUSG00000044149	Nkrf	100	93.913	ENSUAMG00000028368	NKRF	100	93.913	Ursus_americanus
ENSMUSG00000044149	Nkrf	100	93.913	ENSUMAG00000002134	NKRF	100	93.913	Ursus_maritimus
ENSMUSG00000044149	Nkrf	82	98.039	ENSVPAG00000000648	NKRF	83	98.039	Vicugna_pacos
ENSMUSG00000044149	Nkrf	100	94.348	ENSVVUG00000011528	NKRF	100	94.348	Vulpes_vulpes
ENSMUSG00000044149	Nkrf	94	50.000	ENSXETG00000007438	nkrf	86	50.000	Xenopus_tropicalis
ENSMUSG00000044149	Nkrf	86	52.930	ENSXCOG00000016716	nkrf	77	52.661	Xiphophorus_couchianus
ENSMUSG00000044149	Nkrf	77	52.930	ENSXMAG00000013716	nkrf	79	52.661	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	21873635.	IBA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process