EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000044221 (Gene tree)
Gene ID: 231413
Gene Symbol: Grsf1
Alias: D5Wsu31e
Full Name: G-rich RNA sequence binding factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 16724 bases
Position: chr5:88659448-88676171
Accession: 106479
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108860	RRM_1	PF00076.22	3.1e-23	1	1
ENSMUSP00000077972	RRM_1	PF00076.22	1.1e-22	1	1
ENSMUSP00000123051	RRM_1	PF00076.22	1.2e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000150438	-	425	-	ENSMUSP00000115589	11 (aa)	-	D3YZS7
ENSMUST00000137725	-	321	-	-	- (aa)	-	-
ENSMUST00000130408	-	899	-	-	- (aa)	-	-
ENSMUST00000078945	-	2538	-	ENSMUSP00000077972	479 (aa)	-	Q8C5Q4
ENSMUST00000133532	-	485	-	ENSMUSP00000114732	57 (aa)	-	D3YV30
ENSMUST00000153565	-	776	-	ENSMUSP00000123051	137 (aa)	-	D3YUN1
ENSMUST00000113234	-	2286	-	ENSMUSP00000108860	362 (aa)	-	E9Q179

Gene Model

Click here to download ENSMUSG00000044221's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000044221's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000044221	Grsf1	99	51.111	ENSMUSG00000045427	Hnrnph2	62	63.158
ENSMUSG00000044221	Grsf1	92	65.333	ENSMUSG00000007850	Hnrnph1	60	64.474
ENSMUSG00000044221	Grsf1	70	67.532	ENSMUSG00000020069	Hnrnph3	58	67.089
ENSMUSG00000044221	Grsf1	97	47.407	ENSMUSG00000042079	Hnrnpf	97	44.811

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000044221	Grsf1	100	97.080	ENSG00000132463	GRSF1	100	93.396	Homo_sapiens
ENSMUSG00000044221	Grsf1	100	97.810	ENSAMEG00000005896	GRSF1	100	94.199	Ailuropoda_melanoleuca
ENSMUSG00000044221	Grsf1	99	77.778	ENSACAG00000012921	GRSF1	91	61.284	Anolis_carolinensis
ENSMUSG00000044221	Grsf1	100	97.810	ENSANAG00000022114	GRSF1	100	92.484	Aotus_nancymaae
ENSMUSG00000044221	Grsf1	100	94.891	ENSBTAG00000008577	GRSF1	100	94.199	Bos_taurus
ENSMUSG00000044221	Grsf1	100	97.810	ENSCJAG00000014477	GRSF1	99	94.805	Callithrix_jacchus
ENSMUSG00000044221	Grsf1	100	97.810	ENSCAFG00000002922	GRSF1	100	95.018	Canis_familiaris
ENSMUSG00000044221	Grsf1	100	97.810	ENSCAFG00020027060	GRSF1	100	97.619	Canis_lupus_dingo
ENSMUSG00000044221	Grsf1	100	95.620	ENSCHIG00000021580	GRSF1	100	92.500	Capra_hircus
ENSMUSG00000044221	Grsf1	100	97.810	ENSTSYG00000008487	-	100	95.597	Carlito_syrichta
ENSMUSG00000044221	Grsf1	100	91.241	ENSTSYG00000028860	-	100	77.473	Carlito_syrichta
ENSMUSG00000044221	Grsf1	100	93.431	ENSCAPG00000000156	GRSF1	100	88.636	Cavia_aperea
ENSMUSG00000044221	Grsf1	100	93.431	ENSCPOG00000011662	GRSF1	100	88.366	Cavia_porcellus
ENSMUSG00000044221	Grsf1	100	95.620	ENSCCAG00000028735	-	100	91.232	Cebus_capucinus
ENSMUSG00000044221	Grsf1	91	81.081	ENSCCAG00000024189	-	87	77.372	Cebus_capucinus
ENSMUSG00000044221	Grsf1	100	97.810	ENSCATG00000035808	GRSF1	99	94.194	Cercocebus_atys
ENSMUSG00000044221	Grsf1	100	93.431	ENSCLAG00000003057	GRSF1	100	88.920	Chinchilla_lanigera
ENSMUSG00000044221	Grsf1	100	97.810	ENSCSAG00000004856	GRSF1	100	91.649	Chlorocebus_sabaeus
ENSMUSG00000044221	Grsf1	99	77.778	ENSCPBG00000019502	GRSF1	86	66.736	Chrysemys_picta_bellii
ENSMUSG00000044221	Grsf1	100	97.810	ENSCANG00000037992	GRSF1	100	94.340	Colobus_angolensis_palliatus
ENSMUSG00000044221	Grsf1	100	96.350	ENSCGRG00001019953	Grsf1	100	96.133	Cricetulus_griseus_chok1gshd
ENSMUSG00000044221	Grsf1	100	96.350	ENSCGRG00000005357	Grsf1	100	96.122	Cricetulus_griseus_crigri
ENSMUSG00000044221	Grsf1	100	96.350	ENSDORG00000015145	Grsf1	100	96.350	Dipodomys_ordii
ENSMUSG00000044221	Grsf1	100	94.891	ENSETEG00000013786	GRSF1	100	93.333	Echinops_telfairi
ENSMUSG00000044221	Grsf1	100	97.080	ENSEASG00005016685	GRSF1	94	92.500	Equus_asinus_asinus
ENSMUSG00000044221	Grsf1	100	97.080	ENSECAG00000024208	GRSF1	94	92.902	Equus_caballus
ENSMUSG00000044221	Grsf1	93	59.259	ENSELUG00000011613	-	91	41.713	Esox_lucius
ENSMUSG00000044221	Grsf1	100	97.080	ENSFCAG00000007270	GRSF1	100	93.737	Felis_catus
ENSMUSG00000044221	Grsf1	98	55.970	ENSFALG00000008394	GRSF1	98	55.882	Ficedula_albicollis
ENSMUSG00000044221	Grsf1	100	89.781	ENSFDAG00000008167	-	100	89.781	Fukomys_damarensis
ENSMUSG00000044221	Grsf1	98	59.701	ENSGALG00000031160	GRSF1	78	49.737	Gallus_gallus
ENSMUSG00000044221	Grsf1	99	76.471	ENSGAGG00000006013	GRSF1	99	65.041	Gopherus_agassizii
ENSMUSG00000044221	Grsf1	100	97.080	ENSGGOG00000014852	-	100	93.082	Gorilla_gorilla
ENSMUSG00000044221	Grsf1	100	93.431	ENSHGLG00000000661	GRSF1	100	87.812	Heterocephalus_glaber_female
ENSMUSG00000044221	Grsf1	100	93.431	ENSHGLG00100005974	GRSF1	100	93.431	Heterocephalus_glaber_male
ENSMUSG00000044221	Grsf1	100	97.810	ENSSTOG00000011569	GRSF1	100	96.133	Ictidomys_tridecemlineatus
ENSMUSG00000044221	Grsf1	100	93.431	ENSJJAG00000005325	Grsf1	100	93.431	Jaculus_jaculus
ENSMUSG00000044221	Grsf1	95	59.231	ENSLACG00000009507	GRSF1	97	52.975	Latimeria_chalumnae
ENSMUSG00000044221	Grsf1	100	53.957	ENSLOCG00000011589	GRSF1	77	48.718	Lepisosteus_oculatus
ENSMUSG00000044221	Grsf1	100	96.350	ENSLAFG00000017032	-	100	90.909	Loxodonta_africana
ENSMUSG00000044221	Grsf1	100	97.810	ENSMFAG00000037346	GRSF1	99	94.516	Macaca_fascicularis
ENSMUSG00000044221	Grsf1	100	97.810	ENSMMUG00000000380	GRSF1	99	94.805	Macaca_mulatta
ENSMUSG00000044221	Grsf1	98	89.552	ENSMNEG00000023162	GRSF1	100	95.238	Macaca_nemestrina
ENSMUSG00000044221	Grsf1	100	97.810	ENSMLEG00000007180	GRSF1	100	93.923	Mandrillus_leucophaeus
ENSMUSG00000044221	Grsf1	98	60.448	ENSMGAG00000009940	GRSF1	98	52.994	Meleagris_gallopavo
ENSMUSG00000044221	Grsf1	100	95.620	ENSMICG00000005385	GRSF1	99	93.629	Microcebus_murinus
ENSMUSG00000044221	Grsf1	100	95.620	ENSMOCG00000012769	-	100	95.620	Microtus_ochrogaster
ENSMUSG00000044221	Grsf1	100	90.511	ENSMODG00000019088	GRSF1	90	77.572	Monodelphis_domestica
ENSMUSG00000044221	Grsf1	100	100.000	MGP_CAROLIEiJ_G0027377	Grsf1	100	100.000	Mus_caroli
ENSMUSG00000044221	Grsf1	100	98.540	MGP_PahariEiJ_G0017155	Grsf1	100	98.540	Mus_pahari
ENSMUSG00000044221	Grsf1	100	99.724	MGP_SPRETEiJ_G0028374	Grsf1	100	99.724	Mus_spretus
ENSMUSG00000044221	Grsf1	100	97.810	ENSMPUG00000009499	GRSF1	97	93.716	Mustela_putorius_furo
ENSMUSG00000044221	Grsf1	100	94.286	ENSMLUG00000028158	GRSF1	100	92.055	Myotis_lucifugus
ENSMUSG00000044221	Grsf1	100	96.350	ENSNGAG00000022132	-	100	96.350	Nannospalax_galili
ENSMUSG00000044221	Grsf1	100	96.350	ENSNLEG00000007721	-	99	92.903	Nomascus_leucogenys
ENSMUSG00000044221	Grsf1	82	91.964	ENSMEUG00000015942	GRSF1	99	72.067	Notamacropus_eugenii
ENSMUSG00000044221	Grsf1	100	94.891	ENSOPRG00000010148	-	78	90.000	Ochotona_princeps
ENSMUSG00000044221	Grsf1	89	91.803	ENSODEG00000004897	-	100	76.731	Octodon_degus
ENSMUSG00000044221	Grsf1	100	92.701	ENSODEG00000001826	-	100	86.430	Octodon_degus
ENSMUSG00000044221	Grsf1	99	86.029	ENSODEG00000010775	-	100	77.193	Octodon_degus
ENSMUSG00000044221	Grsf1	94	63.415	ENSOANG00000013696	-	100	63.415	Ornithorhynchus_anatinus
ENSMUSG00000044221	Grsf1	100	97.810	ENSOCUG00000010029	GRSF1	100	81.435	Oryctolagus_cuniculus
ENSMUSG00000044221	Grsf1	99	90.659	ENSOGAG00000000141	-	100	90.411	Otolemur_garnettii
ENSMUSG00000044221	Grsf1	99	81.440	ENSOGAG00000026370	-	99	71.670	Otolemur_garnettii
ENSMUSG00000044221	Grsf1	100	93.571	ENSOARG00000011898	GRSF1	100	93.699	Ovis_aries
ENSMUSG00000044221	Grsf1	100	97.080	ENSPPAG00000042456	-	100	93.396	Pan_paniscus
ENSMUSG00000044221	Grsf1	100	97.080	ENSPPRG00000022913	GRSF1	100	93.737	Panthera_pardus
ENSMUSG00000044221	Grsf1	100	97.080	ENSPTIG00000008060	GRSF1	100	94.475	Panthera_tigris_altaica
ENSMUSG00000044221	Grsf1	100	97.080	ENSPTRG00000016136	GRSF1	99	93.226	Pan_troglodytes
ENSMUSG00000044221	Grsf1	100	97.080	ENSPANG00000018597	GRSF1	99	93.548	Papio_anubis
ENSMUSG00000044221	Grsf1	98	74.500	ENSPSIG00000014267	-	96	74.500	Pelodiscus_sinensis
ENSMUSG00000044221	Grsf1	100	97.080	ENSPEMG00000012814	Grsf1	100	96.961	Peromyscus_maniculatus_bairdii
ENSMUSG00000044221	Grsf1	100	91.971	ENSPCIG00000000627	GRSF1	100	80.873	Phascolarctos_cinereus
ENSMUSG00000044221	Grsf1	90	95.146	ENSPPYG00000014812	GRSF1	100	77.755	Pongo_abelii
ENSMUSG00000044221	Grsf1	100	95.620	ENSPCAG00000013949	GRSF1	100	86.047	Procavia_capensis
ENSMUSG00000044221	Grsf1	100	96.350	ENSPVAG00000004338	GRSF1	100	86.848	Pteropus_vampyrus
ENSMUSG00000044221	Grsf1	100	98.540	ENSRNOG00000003392	Grsf1	100	96.660	Rattus_norvegicus
ENSMUSG00000044221	Grsf1	100	97.810	ENSRBIG00000036494	GRSF1	99	94.194	Rhinopithecus_bieti
ENSMUSG00000044221	Grsf1	100	97.810	ENSRROG00000035735	GRSF1	99	93.871	Rhinopithecus_roxellana
ENSMUSG00000044221	Grsf1	91	94.805	ENSSBOG00000032141	GRSF1	82	95.726	Saimiri_boliviensis_boliviensis
ENSMUSG00000044221	Grsf1	100	91.971	ENSSHAG00000018365	GRSF1	97	83.422	Sarcophilus_harrisii
ENSMUSG00000044221	Grsf1	100	94.161	ENSSARG00000011681	GRSF1	100	93.506	Sorex_araneus
ENSMUSG00000044221	Grsf1	99	68.116	ENSSPUG00000007576	GRSF1	99	57.692	Sphenodon_punctatus
ENSMUSG00000044221	Grsf1	100	94.161	ENSSSCG00000008940	GRSF1	100	91.858	Sus_scrofa
ENSMUSG00000044221	Grsf1	98	55.970	ENSTGUG00000001644	GRSF1	99	54.755	Taeniopygia_guttata
ENSMUSG00000044221	Grsf1	100	97.080	ENSTBEG00000010173	GRSF1	100	94.805	Tupaia_belangeri
ENSMUSG00000044221	Grsf1	99	88.643	ENSTTRG00000008405	GRSF1	97	88.451	Tursiops_truncatus
ENSMUSG00000044221	Grsf1	100	97.810	ENSUAMG00000008901	GRSF1	93	94.615	Ursus_americanus
ENSMUSG00000044221	Grsf1	100	97.810	ENSUMAG00000003757	GRSF1	87	95.014	Ursus_maritimus
ENSMUSG00000044221	Grsf1	100	97.080	ENSVPAG00000011889	GRSF1	100	80.886	Vicugna_pacos
ENSMUSG00000044221	Grsf1	100	97.810	ENSVVUG00000004150	GRSF1	100	94.186	Vulpes_vulpes
ENSMUSG00000044221	Grsf1	96	61.940	ENSXETG00000013850	grsf1	100	51.762	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008033	tRNA processing	-	IEA	Process
GO:0009952	anterior/posterior pattern specification	15857914.	IMP	Process
GO:0016331	morphogenesis of embryonic epithelium	15857914.	IMP	Process
GO:0035770	ribonucleoprotein granule	-	ISO	Component
GO:0042645	mitochondrial nucleoid	-	ISO	Component