EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000124909	-	719	-	-	- (aa)	-	-
ENSMUST00000100467	-	12479	XM_006504788	ENSMUSP00000098035	3847 (aa)	XP_006504851	E9QLK7
ENSMUST00000143357	-	796	-	-	- (aa)	-	-
ENSMUST00000128550	-	415	-	ENSMUSP00000115917	58 (aa)	-	D3YY11
ENSMUST00000038980	-	12344	XM_006504795	ENSMUSP00000042544	3829 (aa)	XP_006504858	E9PZA7
ENSMUST00000198524	-	3101	-	-	- (aa)	-	-
ENSMUST00000132347	-	4781	-	-	- (aa)	-	-
ENSMUST00000132925	-	11581	-	ENSMUSP00000122021	3587 (aa)	-	F7CGG2
ENSMUST00000138589	-	888	-	-	- (aa)	-	-
ENSMUST00000213013	-	12398	XM_006504781	ENSMUSP00000148419	3859 (aa)	XP_006504844	A0A1D5RLL4
ENSMUST00000136379	-	2621	-	-	- (aa)	-	-
ENSMUST00000196258	-	2193	-	-	- (aa)	-	-
ENSMUST00000094120	-	12456	XM_006504785	ENSMUSP00000091668	3858 (aa)	XP_006504848	E9PWT1
ENSMUST00000197741	-	960	-	-	- (aa)	-	-
ENSMUST00000197834	-	1752	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu05166	Human T-cell leukemia virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000045482	Trrap	100	100.000	ENSG00000196367	TRRAP	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000123	histone acetyltransferase complex	11544477.	TAS	Component
GO:0000124	SAGA complex	21873635.	IBA	Component
GO:0000812	Swr1 complex	-	ISO	Component
GO:0003682	chromatin binding	-	ISO	Function
GO:0003712	transcription coregulator activity	21873635.	IBA	Function
GO:0003712	transcription coregulator activity	-	ISO	Function
GO:0003713	transcription coactivator activity	12464179.	IDA	Function
GO:0005515	protein binding	16494529.20508642.20946988.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	12464179.	IDA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0006355	regulation of transcription, DNA-templated	12464179.	IDA	Process
GO:0007093	mitotic cell cycle checkpoint	11544477.	IMP	Process
GO:0016573	histone acetylation	-	IEA	Process
GO:0016578	histone deubiquitination	-	ISO	Process
GO:0030914	STAGA complex	-	ISO	Component
GO:0033276	transcription factor TFTC complex	-	ISO	Component
GO:0035267	NuA4 histone acetyltransferase complex	21873635.	IBA	Component
GO:0035267	NuA4 histone acetyltransferase complex	-	ISO	Component
GO:0043967	histone H4 acetylation	-	ISO	Process
GO:0043968	histone H2A acetylation	-	ISO	Process