EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000045538 (Gene tree)
Gene ID: 71986
Gene Symbol: Ddx28
Alias: 2410004K13Rik|Mddx28
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 2262 bases
Position: chr8:106009621-106011882
Accession: 1919236
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000058950	DEAD	PF00270.29	7.6e-35	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000058579	-	2262	-	ENSMUSP00000058950	540 (aa)	-	Q9CWT6

Gene Model

Click here to download ENSMUSG00000045538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000045538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000045538	Ddx28	70	30.423	ENSMUSG00000070291	Ddx43	54	30.159
ENSMUSG00000045538	Ddx28	66	30.556	ENSMUSG00000055065	Ddx17	51	30.556
ENSMUSG00000045538	Ddx28	68	30.296	ENSMUSG00000026806	Ddx31	56	30.296
ENSMUSG00000045538	Ddx28	68	31.649	ENSMUSG00000057788	Ddx49	71	31.649
ENSMUSG00000045538	Ddx28	69	30.886	ENSMUSG00000029389	Ddx55	60	30.886
ENSMUSG00000045538	Ddx28	67	32.884	ENSMUSG00000026404	Ddx59	54	32.884
ENSMUSG00000045538	Ddx28	72	33.079	ENSMUSG00000030204	Ddx47	70	49.398

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000045538	Ddx28	99	80.855	ENSG00000182810	DDX28	99	80.855	Homo_sapiens
ENSMUSG00000045538	Ddx28	94	48.549	ENSAPOG00000000991	ddx28	89	48.549	Acanthochromis_polyacanthus
ENSMUSG00000045538	Ddx28	99	79.592	ENSAMEG00000019426	DDX28	97	80.192	Ailuropoda_melanoleuca
ENSMUSG00000045538	Ddx28	93	48.356	ENSACIG00000021615	ddx28	90	48.356	Amphilophus_citrinellus
ENSMUSG00000045538	Ddx28	94	48.748	ENSAOCG00000004610	ddx28	89	48.748	Amphiprion_ocellaris
ENSMUSG00000045538	Ddx28	94	48.555	ENSAPEG00000002143	ddx28	89	48.555	Amphiprion_percula
ENSMUSG00000045538	Ddx28	94	49.222	ENSATEG00000018691	ddx28	90	49.222	Anabas_testudineus
ENSMUSG00000045538	Ddx28	94	54.721	ENSACAG00000009755	DDX28	94	54.721	Anolis_carolinensis
ENSMUSG00000045538	Ddx28	93	47.276	ENSACLG00000012984	ddx28	89	47.276	Astatotilapia_calliptera
ENSMUSG00000045538	Ddx28	93	48.000	ENSAMXG00000005878	ddx28	91	48.000	Astyanax_mexicanus
ENSMUSG00000045538	Ddx28	96	81.958	ENSBTAG00000004290	DDX28	95	82.115	Bos_taurus
ENSMUSG00000045538	Ddx28	98	79.962	ENSCAFG00000020327	DDX28	99	79.962	Canis_familiaris
ENSMUSG00000045538	Ddx28	98	79.962	ENSCAFG00020019785	DDX28	99	79.962	Canis_lupus_dingo
ENSMUSG00000045538	Ddx28	96	81.888	ENSCHIG00000009658	DDX28	95	81.888	Capra_hircus
ENSMUSG00000045538	Ddx28	100	77.593	ENSCPOG00000013746	DDX28	97	78.503	Cavia_porcellus
ENSMUSG00000045538	Ddx28	99	78.293	ENSCSAG00000018472	DDX28	99	78.293	Chlorocebus_sabaeus
ENSMUSG00000045538	Ddx28	87	60.934	ENSCPBG00000012105	DDX28	85	59.861	Chrysemys_picta_bellii
ENSMUSG00000045538	Ddx28	67	39.788	ENSCSAVG00000006341	-	94	40.162	Ciona_savignyi
ENSMUSG00000045538	Ddx28	97	88.740	ENSCGRG00001024412	Ddx28	100	88.931	Cricetulus_griseus_chok1gshd
ENSMUSG00000045538	Ddx28	94	48.269	ENSCSEG00000011651	ddx28	90	48.269	Cynoglossus_semilaevis
ENSMUSG00000045538	Ddx28	94	50.487	ENSCVAG00000004044	ddx28	90	50.487	Cyprinodon_variegatus
ENSMUSG00000045538	Ddx28	93	49.511	ENSDARG00000060411	ddx28	90	49.511	Danio_rerio
ENSMUSG00000045538	Ddx28	68	80.978	ENSDNOG00000033593	DDX28	99	80.978	Dasypus_novemcinctus
ENSMUSG00000045538	Ddx28	99	80.148	ENSDORG00000028868	Ddx28	96	81.346	Dipodomys_ordii
ENSMUSG00000045538	Ddx28	88	33.539	FBgn0086130	Dbp21E2	87	33.402	Drosophila_melanogaster
ENSMUSG00000045538	Ddx28	100	77.778	ENSETEG00000001062	-	96	79.271	Echinops_telfairi
ENSMUSG00000045538	Ddx28	77	48.438	ENSEBUG00000004791	ddx28	80	48.705	Eptatretus_burgeri
ENSMUSG00000045538	Ddx28	100	82.593	ENSEASG00005020387	DDX28	100	82.593	Equus_asinus_asinus
ENSMUSG00000045538	Ddx28	100	82.407	ENSECAG00000006451	DDX28	100	82.407	Equus_caballus
ENSMUSG00000045538	Ddx28	78	71.599	ENSEEUG00000005017	DDX28	96	72.019	Erinaceus_europaeus
ENSMUSG00000045538	Ddx28	93	50.097	ENSELUG00000005302	ddx28	97	49.808	Esox_lucius
ENSMUSG00000045538	Ddx28	99	81.447	ENSFCAG00000012858	DDX28	96	82.500	Felis_catus
ENSMUSG00000045538	Ddx28	93	50.000	ENSFHEG00000012573	ddx28	90	50.000	Fundulus_heteroclitus
ENSMUSG00000045538	Ddx28	93	47.656	ENSGMOG00000017045	ddx28	95	47.656	Gadus_morhua
ENSMUSG00000045538	Ddx28	93	50.288	ENSGALG00000048700	DDX28	88	51.527	Gallus_gallus
ENSMUSG00000045538	Ddx28	93	49.216	ENSGAFG00000009249	ddx28	89	49.216	Gambusia_affinis
ENSMUSG00000045538	Ddx28	93	49.805	ENSGACG00000016367	ddx28	94	49.805	Gasterosteus_aculeatus
ENSMUSG00000045538	Ddx28	79	59.028	ENSGAGG00000004565	DDX28	93	59.346	Gopherus_agassizii
ENSMUSG00000045538	Ddx28	99	81.227	ENSGGOG00000001220	DDX28	99	81.227	Gorilla_gorilla
ENSMUSG00000045538	Ddx28	93	49.612	ENSHBUG00000001016	ddx28	90	49.612	Haplochromis_burtoni
ENSMUSG00000045538	Ddx28	95	45.873	ENSHCOG00000017590	ddx28	93	45.873	Hippocampus_comes
ENSMUSG00000045538	Ddx28	93	48.738	ENSIPUG00000017350	Ddx28	89	48.738	Ictalurus_punctatus
ENSMUSG00000045538	Ddx28	100	80.556	ENSSTOG00000002064	DDX28	100	80.556	Ictidomys_tridecemlineatus
ENSMUSG00000045538	Ddx28	100	79.705	ENSJJAG00000012460	-	100	79.705	Jaculus_jaculus
ENSMUSG00000045538	Ddx28	94	47.961	ENSKMAG00000018183	ddx28	90	47.961	Kryptolebias_marmoratus
ENSMUSG00000045538	Ddx28	93	49.023	ENSLBEG00000006072	ddx28	90	49.023	Labrus_bergylta
ENSMUSG00000045538	Ddx28	95	54.776	ENSLACG00000005578	DDX28	88	54.776	Latimeria_chalumnae
ENSMUSG00000045538	Ddx28	95	52.107	ENSLOCG00000017604	ddx28	92	52.107	Lepisosteus_oculatus
ENSMUSG00000045538	Ddx28	99	81.447	ENSLAFG00000031239	DDX28	99	81.447	Loxodonta_africana
ENSMUSG00000045538	Ddx28	99	78.479	ENSMMUG00000010836	DDX28	99	78.479	Macaca_mulatta
ENSMUSG00000045538	Ddx28	94	49.328	ENSMAMG00000020220	ddx28	90	49.328	Mastacembelus_armatus
ENSMUSG00000045538	Ddx28	93	49.611	ENSMZEG00005009292	ddx28	90	49.611	Maylandia_zebra
ENSMUSG00000045538	Ddx28	96	68.199	ENSMICG00000012346	-	96	68.199	Microcebus_murinus
ENSMUSG00000045538	Ddx28	100	89.444	ENSMOCG00000009815	Ddx28	100	89.444	Microtus_ochrogaster
ENSMUSG00000045538	Ddx28	95	48.748	ENSMMOG00000000270	ddx28	92	48.748	Mola_mola
ENSMUSG00000045538	Ddx28	96	69.246	ENSMODG00000005303	DDX28	94	70.713	Monodelphis_domestica
ENSMUSG00000045538	Ddx28	94	48.362	ENSMALG00000008864	ddx28	90	48.362	Monopterus_albus
ENSMUSG00000045538	Ddx28	100	97.963	MGP_CAROLIEiJ_G0031510	Ddx28	100	97.963	Mus_caroli
ENSMUSG00000045538	Ddx28	100	97.222	MGP_PahariEiJ_G0023110	Ddx28	100	97.222	Mus_pahari
ENSMUSG00000045538	Ddx28	100	99.259	MGP_SPRETEiJ_G0032628	Ddx28	100	99.259	Mus_spretus
ENSMUSG00000045538	Ddx28	75	78.660	ENSMPUG00000006915	DDX28	100	78.660	Mustela_putorius_furo
ENSMUSG00000045538	Ddx28	98	78.491	ENSMLUG00000005899	DDX28	98	78.491	Myotis_lucifugus
ENSMUSG00000045538	Ddx28	96	85.000	ENSNGAG00000015762	Ddx28	96	85.385	Nannospalax_galili
ENSMUSG00000045538	Ddx28	93	49.414	ENSNBRG00000001337	ddx28	91	49.414	Neolamprologus_brichardi
ENSMUSG00000045538	Ddx28	93	49.611	ENSONIG00000020597	ddx28	90	49.611	Oreochromis_niloticus
ENSMUSG00000045538	Ddx28	52	63.121	ENSOANG00000003551	-	98	63.121	Ornithorhynchus_anatinus
ENSMUSG00000045538	Ddx28	100	79.630	ENSOCUG00000023074	DDX28	100	79.630	Oryctolagus_cuniculus
ENSMUSG00000045538	Ddx28	93	48.633	ENSORLG00000011968	ddx28	90	48.633	Oryzias_latipes
ENSMUSG00000045538	Ddx28	93	48.438	ENSORLG00020001951	ddx28	91	48.438	Oryzias_latipes_hni
ENSMUSG00000045538	Ddx28	93	47.852	ENSORLG00015023030	ddx28	91	47.852	Oryzias_latipes_hsok
ENSMUSG00000045538	Ddx28	94	47.471	ENSOMEG00000012445	ddx28	90	47.471	Oryzias_melastigma
ENSMUSG00000045538	Ddx28	97	79.317	ENSOGAG00000016895	DDX28	99	78.889	Otolemur_garnettii
ENSMUSG00000045538	Ddx28	82	78.153	ENSOARG00000003313	DDX28	99	78.153	Ovis_aries
ENSMUSG00000045538	Ddx28	99	77.695	ENSPPAG00000036971	DDX28	99	77.695	Pan_paniscus
ENSMUSG00000045538	Ddx28	99	82.746	ENSPPRG00000018322	DDX28	96	83.654	Panthera_pardus
ENSMUSG00000045538	Ddx28	99	79.406	ENSPTIG00000006444	DDX28	96	80.192	Panthera_tigris_altaica
ENSMUSG00000045538	Ddx28	99	81.041	ENSPTRG00000008258	DDX28	99	81.041	Pan_troglodytes
ENSMUSG00000045538	Ddx28	93	49.709	ENSPKIG00000021200	ddx28	93	49.709	Paramormyrops_kingsleyae
ENSMUSG00000045538	Ddx28	55	62.838	ENSPSIG00000001127	DDX28	97	62.838	Pelodiscus_sinensis
ENSMUSG00000045538	Ddx28	92	45.562	ENSPMGG00000007908	ddx28	88	45.562	Periophthalmus_magnuspinnatus
ENSMUSG00000045538	Ddx28	100	87.638	ENSPEMG00000003395	Ddx28	100	87.638	Peromyscus_maniculatus_bairdii
ENSMUSG00000045538	Ddx28	52	51.399	ENSPMAG00000006983	DDX28	94	51.399	Petromyzon_marinus
ENSMUSG00000045538	Ddx28	93	49.412	ENSPFOG00000020838	DDX28	89	49.412	Poecilia_formosa
ENSMUSG00000045538	Ddx28	93	49.412	ENSPFOG00000020952	ddx28	88	49.412	Poecilia_formosa
ENSMUSG00000045538	Ddx28	93	49.412	ENSPLAG00000016292	ddx28	88	49.412	Poecilia_latipinna
ENSMUSG00000045538	Ddx28	93	49.412	ENSPMEG00000011311	ddx28	87	49.412	Poecilia_mexicana
ENSMUSG00000045538	Ddx28	93	49.216	ENSPREG00000002899	ddx28	88	49.216	Poecilia_reticulata
ENSMUSG00000045538	Ddx28	99	80.483	ENSPPYG00000007481	DDX28	100	80.483	Pongo_abelii
ENSMUSG00000045538	Ddx28	100	81.331	ENSPCOG00000024632	DDX28	96	81.992	Propithecus_coquereli
ENSMUSG00000045538	Ddx28	93	49.806	ENSPNYG00000018804	ddx28	90	49.806	Pundamilia_nyererei
ENSMUSG00000045538	Ddx28	93	49.130	ENSPNAG00000014597	ddx28	94	49.130	Pygocentrus_nattereri
ENSMUSG00000045538	Ddx28	99	91.651	ENSRNOG00000019817	Ddx28	99	91.651	Rattus_norvegicus
ENSMUSG00000045538	Ddx28	93	49.903	ENSSFOG00015010181	ddx28	92	49.903	Scleropages_formosus
ENSMUSG00000045538	Ddx28	93	48.062	ENSSMAG00000006831	ddx28	94	48.062	Scophthalmus_maximus
ENSMUSG00000045538	Ddx28	93	47.379	ENSSDUG00000003257	ddx28	89	47.379	Seriola_dumerili
ENSMUSG00000045538	Ddx28	93	47.379	ENSSLDG00000004513	ddx28	89	47.379	Seriola_lalandi_dorsalis
ENSMUSG00000045538	Ddx28	99	78.625	ENSSARG00000014169	DDX28	99	78.625	Sorex_araneus
ENSMUSG00000045538	Ddx28	99	47.145	ENSSPAG00000000988	ddx28	90	48.932	Stegastes_partitus
ENSMUSG00000045538	Ddx28	100	81.481	ENSSSCG00000026038	DDX28	96	82.342	Sus_scrofa
ENSMUSG00000045538	Ddx28	96	47.318	ENSTRUG00000007815	ddx28	94	48.092	Takifugu_rubripes
ENSMUSG00000045538	Ddx28	94	49.312	ENSTNIG00000011352	ddx28	99	49.312	Tetraodon_nigroviridis
ENSMUSG00000045538	Ddx28	87	86.758	ENSTBEG00000017695	DDX28	87	86.758	Tupaia_belangeri
ENSMUSG00000045538	Ddx28	99	81.633	ENSUAMG00000016116	DDX28	99	81.633	Ursus_americanus
ENSMUSG00000045538	Ddx28	81	81.735	ENSUMAG00000019200	DDX28	89	81.735	Ursus_maritimus
ENSMUSG00000045538	Ddx28	81	77.626	ENSVVUG00000012876	DDX28	87	77.626	Vulpes_vulpes
ENSMUSG00000045538	Ddx28	94	50.690	ENSXETG00000005435	ddx28	99	50.690	Xenopus_tropicalis
ENSMUSG00000045538	Ddx28	93	49.412	ENSXCOG00000012364	ddx28	88	49.412	Xiphophorus_couchianus
ENSMUSG00000045538	Ddx28	93	49.608	ENSXMAG00000019603	ddx28	91	49.608	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0019843	rRNA binding	-	ISO	Function
GO:0035770	ribonucleoprotein granule	-	ISO	Component
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:1902775	mitochondrial large ribosomal subunit assembly	-	ISO	Process