EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000045624 (Gene tree)
Gene ID: 66580
Gene Symbol: Esf1
Alias: 2610101J03Rik
Full Name: ESF1 nucleolar pre-rRNA processing protein homolog
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 50682 bases
Position: chr2:140119883-140170564
Accession: 1913830
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000036523	NUC153	PF08159.12	3.9e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000153769	-	617	-	-	- (aa)	-	-
ENSMUST00000141086	-	533	-	-	- (aa)	-	-
ENSMUST00000046030	-	3396	XM_006500011	ENSMUSP00000036523	845 (aa)	XP_006500074	Q3V1V3
ENSMUST00000151317	-	613	-	-	- (aa)	-	-
ENSMUST00000137005	-	639	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000045624's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000045624's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000045624	Esf1	100	80.328	ENSG00000089048	ESF1	99	85.872	Homo_sapiens
ENSMUSG00000045624	Esf1	59	54.667	ENSAPOG00000003004	esf1	99	54.991	Acanthochromis_polyacanthus
ENSMUSG00000045624	Esf1	100	77.273	ENSAMEG00000008830	ESF1	100	76.340	Ailuropoda_melanoleuca
ENSMUSG00000045624	Esf1	76	72.000	ENSACIG00000018305	esf1	90	72.222	Amphilophus_citrinellus
ENSMUSG00000045624	Esf1	75	75.325	ENSAOCG00000006033	esf1	88	75.000	Amphiprion_ocellaris
ENSMUSG00000045624	Esf1	75	75.325	ENSAPEG00000022385	esf1	88	75.000	Amphiprion_percula
ENSMUSG00000045624	Esf1	76	74.324	ENSATEG00000016321	esf1	85	75.000	Anabas_testudineus
ENSMUSG00000045624	Esf1	100	60.839	ENSAPLG00000012113	ESF1	100	59.629	Anas_platyrhynchos
ENSMUSG00000045624	Esf1	100	61.717	ENSACAG00000000963	ESF1	66	74.014	Anolis_carolinensis
ENSMUSG00000045624	Esf1	100	79.250	ENSANAG00000036778	ESF1	100	79.015	Aotus_nancymaae
ENSMUSG00000045624	Esf1	76	71.429	ENSACLG00000002972	esf1	88	70.833	Astatotilapia_calliptera
ENSMUSG00000045624	Esf1	75	66.234	ENSAMXG00000001172	esf1	89	66.667	Astyanax_mexicanus
ENSMUSG00000045624	Esf1	100	78.140	ENSBTAG00000007130	ESF1	100	77.907	Bos_taurus
ENSMUSG00000045624	Esf1	100	78.429	ENSCJAG00000004640	ESF1	100	78.312	Callithrix_jacchus
ENSMUSG00000045624	Esf1	100	77.427	ENSCAFG00000005587	ESF1	100	76.608	Canis_familiaris
ENSMUSG00000045624	Esf1	100	77.427	ENSCAFG00020027530	ESF1	100	76.608	Canis_lupus_dingo
ENSMUSG00000045624	Esf1	100	79.009	ENSCHIG00000021188	ESF1	100	79.009	Capra_hircus
ENSMUSG00000045624	Esf1	100	80.164	ENSTSYG00000009956	ESF1	100	78.873	Carlito_syrichta
ENSMUSG00000045624	Esf1	100	68.203	ENSCAPG00000010466	-	100	67.967	Cavia_aperea
ENSMUSG00000045624	Esf1	80	80.616	ENSCAPG00000010333	-	89	94.444	Cavia_aperea
ENSMUSG00000045624	Esf1	100	79.763	ENSCPOG00000014027	-	100	78.935	Cavia_porcellus
ENSMUSG00000045624	Esf1	100	79.132	ENSCCAG00000024521	ESF1	100	78.781	Cebus_capucinus
ENSMUSG00000045624	Esf1	100	81.125	ENSCATG00000042792	ESF1	100	80.539	Cercocebus_atys
ENSMUSG00000045624	Esf1	100	81.087	ENSCLAG00000013266	-	100	80.142	Chinchilla_lanigera
ENSMUSG00000045624	Esf1	100	79.836	ENSCSAG00000011777	ESF1	100	79.250	Chlorocebus_sabaeus
ENSMUSG00000045624	Esf1	67	50.000	ENSCSAVG00000009015	-	87	49.206	Ciona_savignyi
ENSMUSG00000045624	Esf1	100	80.234	ENSCANG00000030674	ESF1	100	79.883	Colobus_angolensis_palliatus
ENSMUSG00000045624	Esf1	100	86.036	ENSCGRG00001018257	Esf1	100	85.562	Cricetulus_griseus_chok1gshd
ENSMUSG00000045624	Esf1	76	57.955	ENSCSEG00000001159	esf1	88	59.091	Cynoglossus_semilaevis
ENSMUSG00000045624	Esf1	73	75.758	ENSCVAG00000007894	esf1	91	69.444	Cyprinodon_variegatus
ENSMUSG00000045624	Esf1	74	68.919	ENSDARG00000008740	esf1	86	69.444	Danio_rerio
ENSMUSG00000045624	Esf1	100	77.022	ENSDNOG00000019409	ESF1	100	77.113	Dasypus_novemcinctus
ENSMUSG00000045624	Esf1	100	81.678	ENSDORG00000016313	Esf1	100	81.065	Dipodomys_ordii
ENSMUSG00000045624	Esf1	75	43.925	FBgn0024364	CG11417	80	54.286	Drosophila_melanogaster
ENSMUSG00000045624	Esf1	79	79.744	ENSETEG00000004471	ESF1	78	79.318	Echinops_telfairi
ENSMUSG00000045624	Esf1	99	43.842	ENSEBUG00000015161	esf1	87	50.085	Eptatretus_burgeri
ENSMUSG00000045624	Esf1	100	79.719	ENSEASG00005001777	ESF1	100	78.195	Equus_asinus_asinus
ENSMUSG00000045624	Esf1	100	79.601	ENSECAG00000019188	ESF1	100	78.312	Equus_caballus
ENSMUSG00000045624	Esf1	75	56.495	ENSEEUG00000015837	-	100	56.495	Erinaceus_europaeus
ENSMUSG00000045624	Esf1	74	69.231	ENSELUG00000000408	esf1	82	69.444	Esox_lucius
ENSMUSG00000045624	Esf1	100	78.190	ENSFCAG00000000919	ESF1	100	77.674	Felis_catus
ENSMUSG00000045624	Esf1	99	61.899	ENSFALG00000010914	ESF1	99	60.850	Ficedula_albicollis
ENSMUSG00000045624	Esf1	100	78.935	ENSFDAG00000014777	ESF1	100	77.751	Fukomys_damarensis
ENSMUSG00000045624	Esf1	59	60.433	ENSFHEG00000014984	esf1	99	60.827	Fundulus_heteroclitus
ENSMUSG00000045624	Esf1	100	60.492	ENSGALG00000034768	ESF1	65	72.875	Gallus_gallus
ENSMUSG00000045624	Esf1	66	55.537	ENSGAFG00000000540	esf1	81	56.397	Gambusia_affinis
ENSMUSG00000045624	Esf1	100	79.625	ENSGGOG00000006692	ESF1	100	78.923	Gorilla_gorilla
ENSMUSG00000045624	Esf1	80	72.727	ENSHBUG00000001890	esf1	88	72.222	Haplochromis_burtoni
ENSMUSG00000045624	Esf1	100	80.260	ENSHGLG00000011505	ESF1	100	78.842	Heterocephalus_glaber_female
ENSMUSG00000045624	Esf1	100	80.260	ENSHGLG00100015045	ESF1	100	78.842	Heterocephalus_glaber_male
ENSMUSG00000045624	Esf1	75	69.231	ENSIPUG00000006507	esf1	85	69.444	Ictalurus_punctatus
ENSMUSG00000045624	Esf1	100	80.969	ENSSTOG00000009846	ESF1	100	79.314	Ictidomys_tridecemlineatus
ENSMUSG00000045624	Esf1	100	80.330	ENSJJAG00000012570	Esf1	100	80.094	Jaculus_jaculus
ENSMUSG00000045624	Esf1	65	67.372	ENSLACG00000016439	ESF1	66	67.782	Latimeria_chalumnae
ENSMUSG00000045624	Esf1	100	77.385	ENSLAFG00000005479	ESF1	100	76.678	Loxodonta_africana
ENSMUSG00000045624	Esf1	100	80.891	ENSMFAG00000036841	ESF1	100	80.305	Macaca_fascicularis
ENSMUSG00000045624	Esf1	100	80.774	ENSMNEG00000044042	ESF1	100	80.188	Macaca_nemestrina
ENSMUSG00000045624	Esf1	100	80.774	ENSMLEG00000037121	ESF1	100	80.188	Mandrillus_leucophaeus
ENSMUSG00000045624	Esf1	75	74.324	ENSMAMG00000018648	esf1	88	75.000	Mastacembelus_armatus
ENSMUSG00000045624	Esf1	59	60.913	ENSMZEG00005013912	esf1	99	60.913	Maylandia_zebra
ENSMUSG00000045624	Esf1	100	61.027	ENSMGAG00000004291	ESF1	100	60.631	Meleagris_gallopavo
ENSMUSG00000045624	Esf1	100	86.864	ENSMAUG00000015975	Esf1	100	86.272	Mesocricetus_auratus
ENSMUSG00000045624	Esf1	100	80.679	ENSMICG00000010711	ESF1	100	80.913	Microcebus_murinus
ENSMUSG00000045624	Esf1	100	85.562	ENSMOCG00000005902	Esf1	100	84.260	Microtus_ochrogaster
ENSMUSG00000045624	Esf1	59	59.004	ENSMMOG00000018693	esf1	99	59.125	Mola_mola
ENSMUSG00000045624	Esf1	100	68.118	ENSMODG00000005066	ESF1	100	67.176	Monodelphis_domestica
ENSMUSG00000045624	Esf1	69	70.270	ENSMALG00000007338	esf1	86	70.833	Monopterus_albus
ENSMUSG00000045624	Esf1	100	97.160	MGP_CAROLIEiJ_G0024365	Esf1	100	97.160	Mus_caroli
ENSMUSG00000045624	Esf1	100	95.266	MGP_PahariEiJ_G0025810	Esf1	100	94.438	Mus_pahari
ENSMUSG00000045624	Esf1	100	98.343	MGP_SPRETEiJ_G0025285	Esf1	100	98.658	Mus_spretus
ENSMUSG00000045624	Esf1	100	79.206	ENSMPUG00000001450	ESF1	100	78.596	Mustela_putorius_furo
ENSMUSG00000045624	Esf1	100	78.363	ENSMLUG00000013080	ESF1	100	77.778	Myotis_lucifugus
ENSMUSG00000045624	Esf1	100	77.622	ENSNLEG00000014563	ESF1	100	76.690	Nomascus_leucogenys
ENSMUSG00000045624	Esf1	60	81.028	ENSOPRG00000004862	ESF1	100	81.028	Ochotona_princeps
ENSMUSG00000045624	Esf1	100	79.314	ENSODEG00000006824	ESF1	100	78.369	Octodon_degus
ENSMUSG00000045624	Esf1	78	72.727	ENSONIG00000006804	esf1	97	72.222	Oreochromis_niloticus
ENSMUSG00000045624	Esf1	100	67.640	ENSOANG00000008432	-	100	66.821	Ornithorhynchus_anatinus
ENSMUSG00000045624	Esf1	100	77.427	ENSOCUG00000005414	ESF1	100	77.193	Oryctolagus_cuniculus
ENSMUSG00000045624	Esf1	59	55.133	ENSORLG00000018625	esf1	99	54.943	Oryzias_latipes
ENSMUSG00000045624	Esf1	75	69.231	ENSORLG00015022826	esf1	91	68.056	Oryzias_latipes_hsok
ENSMUSG00000045624	Esf1	59	54.080	ENSOMEG00000009311	esf1	99	56.107	Oryzias_melastigma
ENSMUSG00000045624	Esf1	100	77.005	ENSOGAG00000016912	ESF1	100	75.708	Otolemur_garnettii
ENSMUSG00000045624	Esf1	100	76.844	ENSOARG00000011158	ESF1	100	73.908	Ovis_aries
ENSMUSG00000045624	Esf1	100	79.836	ENSPPAG00000024379	ESF1	100	78.898	Pan_paniscus
ENSMUSG00000045624	Esf1	100	78.231	ENSPPRG00000012007	ESF1	100	77.830	Panthera_pardus
ENSMUSG00000045624	Esf1	100	78.205	ENSPTIG00000020063	ESF1	100	77.453	Panthera_tigris_altaica
ENSMUSG00000045624	Esf1	100	80.117	ENSPTRG00000013258	ESF1	100	79.649	Pan_troglodytes
ENSMUSG00000045624	Esf1	75	68.605	ENSPKIG00000024448	esf1	78	72.222	Paramormyrops_kingsleyae
ENSMUSG00000045624	Esf1	80	64.935	ENSPMGG00000016911	esf1	69	51.449	Periophthalmus_magnuspinnatus
ENSMUSG00000045624	Esf1	100	67.209	ENSPCIG00000019331	ESF1	84	68.681	Phascolarctos_cinereus
ENSMUSG00000045624	Esf1	76	64.865	ENSPFOG00000010101	esf1	88	66.667	Poecilia_formosa
ENSMUSG00000045624	Esf1	59	56.867	ENSPLAG00000006452	esf1	99	56.867	Poecilia_latipinna
ENSMUSG00000045624	Esf1	79	66.216	ENSPMEG00000000713	esf1	89	66.667	Poecilia_mexicana
ENSMUSG00000045624	Esf1	79	67.568	ENSPREG00000004431	esf1	86	68.056	Poecilia_reticulata
ENSMUSG00000045624	Esf1	100	80.585	ENSPPYG00000010715	ESF1	100	79.883	Pongo_abelii
ENSMUSG00000045624	Esf1	100	71.512	ENSPCAG00000006881	ESF1	100	70.809	Procavia_capensis
ENSMUSG00000045624	Esf1	83	90.278	ENSPVAG00000001295	ESF1	83	90.278	Pteropus_vampyrus
ENSMUSG00000045624	Esf1	82	70.130	ENSPNYG00000015735	esf1	88	70.833	Pundamilia_nyererei
ENSMUSG00000045624	Esf1	65	61.263	ENSPNAG00000014721	esf1	75	62.116	Pygocentrus_nattereri
ENSMUSG00000045624	Esf1	100	90.566	ENSRNOG00000004777	Esf1	100	89.623	Rattus_norvegicus
ENSMUSG00000045624	Esf1	100	80.070	ENSRBIG00000035763	ESF1	100	78.898	Rhinopithecus_bieti
ENSMUSG00000045624	Esf1	100	79.977	ENSRROG00000032022	ESF1	100	79.508	Rhinopithecus_roxellana
ENSMUSG00000045624	Esf1	55	33.400	YDR365C	-	73	33.528	Saccharomyces_cerevisiae
ENSMUSG00000045624	Esf1	100	78.480	ENSSBOG00000030387	ESF1	100	77.960	Saimiri_boliviensis_boliviensis
ENSMUSG00000045624	Esf1	100	67.920	ENSSHAG00000000449	ESF1	100	66.510	Sarcophilus_harrisii
ENSMUSG00000045624	Esf1	67	60.136	ENSSDUG00000019460	esf1	81	61.246	Seriola_dumerili
ENSMUSG00000045624	Esf1	100	61.944	ENSSPUG00000012635	ESF1	70	73.440	Sphenodon_punctatus
ENSMUSG00000045624	Esf1	75	74.026	ENSSPAG00000019077	esf1	87	73.611	Stegastes_partitus
ENSMUSG00000045624	Esf1	100	78.819	ENSSSCG00000007077	ESF1	100	78.356	Sus_scrofa
ENSMUSG00000045624	Esf1	100	59.429	ENSTGUG00000002450	ESF1	64	72.760	Taeniopygia_guttata
ENSMUSG00000045624	Esf1	79	59.298	ENSTRUG00000009445	esf1	86	73.016	Takifugu_rubripes
ENSMUSG00000045624	Esf1	72	86.131	ENSTBEG00000008552	ESF1	76	86.131	Tupaia_belangeri
ENSMUSG00000045624	Esf1	100	76.923	ENSTTRG00000005335	ESF1	100	77.336	Tursiops_truncatus
ENSMUSG00000045624	Esf1	100	77.830	ENSUMAG00000008579	ESF1	100	77.895	Ursus_maritimus
ENSMUSG00000045624	Esf1	92	82.305	ENSVPAG00000005291	ESF1	92	82.305	Vicugna_pacos
ENSMUSG00000045624	Esf1	100	76.608	ENSVVUG00000014318	ESF1	93	76.608	Vulpes_vulpes
ENSMUSG00000045624	Esf1	78	57.371	ENSXMAG00000017651	esf1	87	70.833	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006364	rRNA processing	21873635.	IBA	Process