EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000046201 (Gene tree)
Gene ID: 106583
Gene Symbol: Scaf8
Alias: A630086M08Rik|A930036P18Rik|Rbm16
Full Name: SR-related CTD-associated factor 8
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 83888 bases
Position: chr17:3114972-3198859
Accession: 1925212
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000076024	RRM_1	PF00076.22	3.8e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000076734	-	4866	-	ENSMUSP00000076024	1268 (aa)	-	Q6DID3
ENSMUST00000232048	-	544	-	ENSMUSP00000156084	110 (aa)	-	UPI000DE7E4C9
ENSMUST00000232079	-	1511	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000046201's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000046201's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000046201	Scaf8	100	91.424	ENSG00000213079	SCAF8	100	91.424	Homo_sapiens
ENSMUSG00000046201	Scaf8	86	69.448	ENSAPOG00000015527	SCAF8	77	69.080	Acanthochromis_polyacanthus
ENSMUSG00000046201	Scaf8	100	89.620	ENSAMEG00000007583	SCAF8	97	89.620	Ailuropoda_melanoleuca
ENSMUSG00000046201	Scaf8	86	69.571	ENSAOCG00000002421	SCAF8	76	69.202	Amphiprion_ocellaris
ENSMUSG00000046201	Scaf8	84	60.409	ENSAPEG00000020115	SCAF8	78	60.281	Amphiprion_percula
ENSMUSG00000046201	Scaf8	85	70.079	ENSATEG00000006959	SCAF8	97	69.382	Anabas_testudineus
ENSMUSG00000046201	Scaf8	100	76.031	ENSAPLG00000005765	SCAF8	100	76.265	Anas_platyrhynchos
ENSMUSG00000046201	Scaf8	99	73.742	ENSACAG00000005282	SCAF8	99	73.664	Anolis_carolinensis
ENSMUSG00000046201	Scaf8	100	91.345	ENSANAG00000036184	SCAF8	100	91.345	Aotus_nancymaae
ENSMUSG00000046201	Scaf8	82	72.906	ENSACLG00000018828	SCAF8	78	72.382	Astatotilapia_calliptera
ENSMUSG00000046201	Scaf8	100	91.095	ENSBTAG00000031917	SCAF8	100	91.095	Bos_taurus
ENSMUSG00000046201	Scaf8	100	91.345	ENSCJAG00000012631	SCAF8	97	89.861	Callithrix_jacchus
ENSMUSG00000046201	Scaf8	99	91.449	ENSCAFG00000000570	SCAF8	99	91.449	Canis_familiaris
ENSMUSG00000046201	Scaf8	99	91.442	ENSCAFG00020015048	SCAF8	99	91.390	Canis_lupus_dingo
ENSMUSG00000046201	Scaf8	100	90.623	ENSCHIG00000025041	SCAF8	100	90.623	Capra_hircus
ENSMUSG00000046201	Scaf8	99	91.211	ENSTSYG00000010991	SCAF8	97	91.211	Carlito_syrichta
ENSMUSG00000046201	Scaf8	99	83.544	ENSCPOG00000022216	-	99	82.753	Cavia_porcellus
ENSMUSG00000046201	Scaf8	100	79.072	ENSCPOG00000030311	-	100	78.066	Cavia_porcellus
ENSMUSG00000046201	Scaf8	100	91.424	ENSCCAG00000024952	SCAF8	100	91.424	Cebus_capucinus
ENSMUSG00000046201	Scaf8	100	91.817	ENSCATG00000035361	SCAF8	100	91.817	Cercocebus_atys
ENSMUSG00000046201	Scaf8	100	90.938	ENSCLAG00000004910	SCAF8	100	91.422	Chinchilla_lanigera
ENSMUSG00000046201	Scaf8	100	90.402	ENSCSAG00000013430	SCAF8	100	90.402	Chlorocebus_sabaeus
ENSMUSG00000046201	Scaf8	100	73.529	ENSCPBG00000016330	SCAF8	100	72.251	Chrysemys_picta_bellii
ENSMUSG00000046201	Scaf8	100	91.581	ENSCANG00000039499	SCAF8	99	91.515	Colobus_angolensis_palliatus
ENSMUSG00000046201	Scaf8	100	95.823	ENSCGRG00001020167	Scaf8	100	95.823	Cricetulus_griseus_chok1gshd
ENSMUSG00000046201	Scaf8	99	95.714	ENSCGRG00000004120	Scaf8	99	95.714	Cricetulus_griseus_crigri
ENSMUSG00000046201	Scaf8	83	69.554	ENSCSEG00000000043	-	76	70.866	Cynoglossus_semilaevis
ENSMUSG00000046201	Scaf8	89	66.230	ENSCVAG00000000925	SCAF8	77	65.707	Cyprinodon_variegatus
ENSMUSG00000046201	Scaf8	96	85.878	ENSDNOG00000025271	SCAF8	100	89.245	Dasypus_novemcinctus
ENSMUSG00000046201	Scaf8	99	90.457	ENSDORG00000006391	Scaf8	100	90.536	Dipodomys_ordii
ENSMUSG00000046201	Scaf8	100	91.424	ENSEASG00005018879	SCAF8	100	91.424	Equus_asinus_asinus
ENSMUSG00000046201	Scaf8	100	91.575	ENSECAG00000005540	SCAF8	100	91.575	Equus_caballus
ENSMUSG00000046201	Scaf8	81	70.855	ENSELUG00000002779	SCAF8	97	67.626	Esox_lucius
ENSMUSG00000046201	Scaf8	100	91.496	ENSFCAG00000023424	SCAF8	100	91.496	Felis_catus
ENSMUSG00000046201	Scaf8	100	75.545	ENSFALG00000012433	SCAF8	100	75.720	Ficedula_albicollis
ENSMUSG00000046201	Scaf8	100	90.323	ENSFDAG00000010335	SCAF8	100	90.323	Fukomys_damarensis
ENSMUSG00000046201	Scaf8	89	71.073	ENSFHEG00000008284	SCAF8	77	70.812	Fundulus_heteroclitus
ENSMUSG00000046201	Scaf8	80	57.869	ENSGMOG00000018812	SCAF8	83	59.473	Gadus_morhua
ENSMUSG00000046201	Scaf8	99	77.025	ENSGALG00000013635	SCAF8	99	76.636	Gallus_gallus
ENSMUSG00000046201	Scaf8	50	59.544	ENSGAFG00000018033	SCAF8	78	66.626	Gambusia_affinis
ENSMUSG00000046201	Scaf8	93	53.764	ENSGACG00000006909	SCAF8	100	54.583	Gasterosteus_aculeatus
ENSMUSG00000046201	Scaf8	63	69.297	ENSGAGG00000017820	-	88	69.297	Gopherus_agassizii
ENSMUSG00000046201	Scaf8	100	91.345	ENSGGOG00000008645	SCAF8	100	91.345	Gorilla_gorilla
ENSMUSG00000046201	Scaf8	82	72.775	ENSHBUG00000019537	SCAF8	78	72.251	Haplochromis_burtoni
ENSMUSG00000046201	Scaf8	100	91.188	ENSHGLG00000003619	SCAF8	100	91.188	Heterocephalus_glaber_female
ENSMUSG00000046201	Scaf8	100	90.559	ENSHGLG00100004708	SCAF8	100	91.118	Heterocephalus_glaber_male
ENSMUSG00000046201	Scaf8	99	92.009	ENSSTOG00000026043	SCAF8	99	92.009	Ictidomys_tridecemlineatus
ENSMUSG00000046201	Scaf8	100	91.102	ENSJJAG00000020480	Scaf8	100	91.102	Jaculus_jaculus
ENSMUSG00000046201	Scaf8	86	68.796	ENSKMAG00000012767	SCAF8	78	68.428	Kryptolebias_marmoratus
ENSMUSG00000046201	Scaf8	59	75.926	ENSLBEG00000012484	-	57	75.556	Labrus_bergylta
ENSMUSG00000046201	Scaf8	88	75.243	ENSLACG00000001394	SCAF8	99	72.451	Latimeria_chalumnae
ENSMUSG00000046201	Scaf8	100	61.081	ENSLOCG00000016856	SCAF8	100	60.376	Lepisosteus_oculatus
ENSMUSG00000046201	Scaf8	100	89.631	ENSLAFG00000000022	SCAF8	100	90.181	Loxodonta_africana
ENSMUSG00000046201	Scaf8	100	91.896	ENSMFAG00000032738	SCAF8	100	91.896	Macaca_fascicularis
ENSMUSG00000046201	Scaf8	100	91.896	ENSMMUG00000015163	SCAF8	100	91.896	Macaca_mulatta
ENSMUSG00000046201	Scaf8	100	91.896	ENSMNEG00000043466	SCAF8	100	91.896	Macaca_nemestrina
ENSMUSG00000046201	Scaf8	99	91.832	ENSMLEG00000034845	SCAF8	99	91.832	Mandrillus_leucophaeus
ENSMUSG00000046201	Scaf8	83	65.885	ENSMAMG00000009457	SCAF8	76	64.974	Mastacembelus_armatus
ENSMUSG00000046201	Scaf8	82	72.775	ENSMZEG00005005698	SCAF8	78	72.251	Maylandia_zebra
ENSMUSG00000046201	Scaf8	99	75.886	ENSMGAG00000012762	SCAF8	100	76.439	Meleagris_gallopavo
ENSMUSG00000046201	Scaf8	99	95.473	ENSMAUG00000009513	Scaf8	100	95.473	Mesocricetus_auratus
ENSMUSG00000046201	Scaf8	100	91.038	ENSMICG00000028965	SCAF8	100	90.881	Microcebus_murinus
ENSMUSG00000046201	Scaf8	100	96.217	ENSMOCG00000014950	Scaf8	100	96.217	Microtus_ochrogaster
ENSMUSG00000046201	Scaf8	81	67.385	ENSMMOG00000002216	SCAF8	75	66.307	Mola_mola
ENSMUSG00000046201	Scaf8	99	84.494	ENSMODG00000008301	SCAF8	99	84.494	Monodelphis_domestica
ENSMUSG00000046201	Scaf8	86	68.176	ENSMALG00000011584	SCAF8	76	71.186	Monopterus_albus
ENSMUSG00000046201	Scaf8	100	99.290	MGP_CAROLIEiJ_G0021016	Scaf8	100	99.290	Mus_caroli
ENSMUSG00000046201	Scaf8	100	98.502	MGP_PahariEiJ_G0023334	Scaf8	100	98.502	Mus_pahari
ENSMUSG00000046201	Scaf8	100	89.620	ENSMPUG00000001974	SCAF8	100	89.620	Mustela_putorius_furo
ENSMUSG00000046201	Scaf8	100	89.606	ENSMLUG00000029190	SCAF8	100	89.606	Myotis_lucifugus
ENSMUSG00000046201	Scaf8	100	93.223	ENSNGAG00000012332	Scaf8	100	93.223	Nannospalax_galili
ENSMUSG00000046201	Scaf8	100	53.313	ENSNBRG00000009067	SCAF8	100	52.778	Neolamprologus_brichardi
ENSMUSG00000046201	Scaf8	100	90.110	ENSNLEG00000015509	SCAF8	99	89.780	Nomascus_leucogenys
ENSMUSG00000046201	Scaf8	70	90.179	ENSOPRG00000018413	-	76	91.011	Ochotona_princeps
ENSMUSG00000046201	Scaf8	100	90.723	ENSODEG00000007296	SCAF8	100	90.723	Octodon_degus
ENSMUSG00000046201	Scaf8	100	55.375	ENSONIG00000008119	SCAF8	99	54.841	Oreochromis_niloticus
ENSMUSG00000046201	Scaf8	99	92.326	ENSOCUG00000026063	SCAF8	99	92.326	Oryctolagus_cuniculus
ENSMUSG00000046201	Scaf8	93	56.379	ENSORLG00000017358	SCAF8	75	71.466	Oryzias_latipes
ENSMUSG00000046201	Scaf8	93	56.414	ENSORLG00020002214	SCAF8	75	71.466	Oryzias_latipes_hni
ENSMUSG00000046201	Scaf8	93	56.379	ENSORLG00015015779	SCAF8	75	71.728	Oryzias_latipes_hsok
ENSMUSG00000046201	Scaf8	93	56.136	ENSOMEG00000015471	SCAF8	75	71.728	Oryzias_melastigma
ENSMUSG00000046201	Scaf8	100	89.783	ENSOGAG00000034223	SCAF8	97	89.783	Otolemur_garnettii
ENSMUSG00000046201	Scaf8	99	90.397	ENSOARG00000004159	SCAF8	100	90.397	Ovis_aries
ENSMUSG00000046201	Scaf8	100	91.267	ENSPPAG00000039826	SCAF8	100	91.267	Pan_paniscus
ENSMUSG00000046201	Scaf8	100	91.496	ENSPPRG00000023175	SCAF8	100	91.496	Panthera_pardus
ENSMUSG00000046201	Scaf8	99	91.363	ENSPTIG00000014836	SCAF8	100	91.363	Panthera_tigris_altaica
ENSMUSG00000046201	Scaf8	100	91.424	ENSPTRG00000018727	SCAF8	100	91.424	Pan_troglodytes
ENSMUSG00000046201	Scaf8	100	91.739	ENSPANG00000017489	SCAF8	100	89.772	Papio_anubis
ENSMUSG00000046201	Scaf8	60	76.047	ENSPKIG00000021212	SCAF8	98	74.738	Paramormyrops_kingsleyae
ENSMUSG00000046201	Scaf8	89	70.068	ENSPSIG00000008614	SCAF8	99	70.862	Pelodiscus_sinensis
ENSMUSG00000046201	Scaf8	99	95.949	ENSPEMG00000010531	Scaf8	100	95.949	Peromyscus_maniculatus_bairdii
ENSMUSG00000046201	Scaf8	100	84.827	ENSPCIG00000001141	SCAF8	100	84.827	Phascolarctos_cinereus
ENSMUSG00000046201	Scaf8	53	54.501	ENSPFOG00000004176	SCAF8	100	54.436	Poecilia_formosa
ENSMUSG00000046201	Scaf8	90	65.826	ENSPLAG00000021432	SCAF8	77	65.367	Poecilia_latipinna
ENSMUSG00000046201	Scaf8	56	59.375	ENSPMEG00000007591	SCAF8	84	64.833	Poecilia_mexicana
ENSMUSG00000046201	Scaf8	93	68.635	ENSPREG00000000652	SCAF8	77	68.143	Poecilia_reticulata
ENSMUSG00000046201	Scaf8	100	90.102	ENSPPYG00000017121	SCAF8	100	89.788	Pongo_abelii
ENSMUSG00000046201	Scaf8	85	95.812	ENSPCAG00000013044	SCAF8	90	95.812	Procavia_capensis
ENSMUSG00000046201	Scaf8	100	91.352	ENSPCOG00000002067	SCAF8	99	91.125	Propithecus_coquereli
ENSMUSG00000046201	Scaf8	98	88.560	ENSPVAG00000005582	SCAF8	99	89.680	Pteropus_vampyrus
ENSMUSG00000046201	Scaf8	82	72.906	ENSPNYG00000007277	SCAF8	78	72.382	Pundamilia_nyererei
ENSMUSG00000046201	Scaf8	87	68.010	ENSPNAG00000024740	SCAF8	82	68.337	Pygocentrus_nattereri
ENSMUSG00000046201	Scaf8	100	96.924	ENSRNOG00000016919	Scaf8	100	96.924	Rattus_norvegicus
ENSMUSG00000046201	Scaf8	100	91.660	ENSRBIG00000035769	SCAF8	100	91.660	Rhinopithecus_bieti
ENSMUSG00000046201	Scaf8	100	91.581	ENSRROG00000013580	SCAF8	100	91.581	Rhinopithecus_roxellana
ENSMUSG00000046201	Scaf8	100	91.345	ENSSBOG00000027023	SCAF8	100	91.345	Saimiri_boliviensis_boliviensis
ENSMUSG00000046201	Scaf8	100	84.368	ENSSHAG00000009915	SCAF8	100	84.368	Sarcophilus_harrisii
ENSMUSG00000046201	Scaf8	100	54.672	ENSSFOG00015009481	SCAF8	100	52.932	Scleropages_formosus
ENSMUSG00000046201	Scaf8	87	72.288	ENSSMAG00000008275	SCAF8	77	71.634	Scophthalmus_maximus
ENSMUSG00000046201	Scaf8	100	75.321	ENSSPUG00000015219	SCAF8	100	75.623	Sphenodon_punctatus
ENSMUSG00000046201	Scaf8	50	59.322	ENSSPAG00000019433	SCAF8	74	64.834	Stegastes_partitus
ENSMUSG00000046201	Scaf8	100	90.866	ENSSSCG00000004070	SCAF8	100	90.866	Sus_scrofa
ENSMUSG00000046201	Scaf8	99	77.358	ENSTGUG00000011151	SCAF8	100	77.516	Taeniopygia_guttata
ENSMUSG00000046201	Scaf8	82	70.196	ENSTRUG00000009243	SCAF8	78	69.935	Takifugu_rubripes
ENSMUSG00000046201	Scaf8	93	65.291	ENSTNIG00000016885	SCAF8	99	54.866	Tetraodon_nigroviridis
ENSMUSG00000046201	Scaf8	99	90.238	ENSTTRG00000014538	SCAF8	100	90.238	Tursiops_truncatus
ENSMUSG00000046201	Scaf8	100	91.024	ENSUAMG00000024736	SCAF8	99	90.952	Ursus_americanus
ENSMUSG00000046201	Scaf8	98	90.924	ENSUMAG00000013404	SCAF8	100	90.924	Ursus_maritimus
ENSMUSG00000046201	Scaf8	67	81.607	ENSVPAG00000012465	SCAF8	99	81.156	Vicugna_pacos
ENSMUSG00000046201	Scaf8	99	91.521	ENSVVUG00000007532	SCAF8	100	91.486	Vulpes_vulpes
ENSMUSG00000046201	Scaf8	100	61.042	ENSXETG00000013132	scaf8	99	61.232	Xenopus_tropicalis
ENSMUSG00000046201	Scaf8	93	68.635	ENSXMAG00000019192	SCAF8	78	68.266	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000993	RNA polymerase II complex binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006366	transcription by RNA polymerase II	-	ISO	Process
GO:0006369	termination of RNA polymerase II transcription	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006397	mRNA processing	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0043175	RNA polymerase core enzyme binding	-	ISO	Function
GO:0070063	RNA polymerase binding	-	ISO	Function