EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000046667 (Gene tree)
Gene ID: 72397
Gene Symbol: Rbm12b1
Alias: 3000004N20Rik|Rbm12b
Full Name: RNA binding motif protein 12 B1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 6468 bases
Position: chr4:12140264-12146731
Accession: 1919647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000053555	RRM_1	PF00076.22	8.2e-32	1	3
ENSMUSP00000053555	RRM_1	PF00076.22	8.2e-32	2	3
ENSMUSP00000053555	RRM_1	PF00076.22	8.2e-32	3	3
ENSMUSP00000064195	RRM_1	PF00076.22	8.2e-32	1	3
ENSMUSP00000064195	RRM_1	PF00076.22	8.2e-32	2	3
ENSMUSP00000064195	RRM_1	PF00076.22	8.2e-32	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000069128	-	3069	-	ENSMUSP00000064195	836 (aa)	-	Q80YR9
ENSMUST00000146416	-	379	-	-	- (aa)	-	-
ENSMUST00000050069	-	2949	XM_006538271	ENSMUSP00000053555	836 (aa)	XP_006538334	Q80YR9
ENSMUST00000138008	-	832	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000046667's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000046667's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000046667	Rbm12b1	100	96.172	ENSMUSG00000052137	Rbm12b2	100	96.172
ENSMUSG00000046667	Rbm12b1	67	71.264	ENSMUSG00000089824	Rbm12	56	71.264

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000046667	Rbm12b1	100	72.614	ENSG00000183808	RBM12B	100	95.122	Homo_sapiens
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSAPOG00000013963	rbm12b	86	50.667	Acanthochromis_polyacanthus
ENSMUSG00000046667	Rbm12b1	100	74.209	ENSAMEG00000007134	RBM12B	100	74.209	Ailuropoda_melanoleuca
ENSMUSG00000046667	Rbm12b1	66	38.289	ENSACIG00000014943	rbm12b	99	39.759	Amphilophus_citrinellus
ENSMUSG00000046667	Rbm12b1	57	30.000	ENSACIG00000013317	zgc:153215	99	30.000	Amphilophus_citrinellus
ENSMUSG00000046667	Rbm12b1	67	52.000	ENSAOCG00000024270	rbm12b	86	52.000	Amphiprion_ocellaris
ENSMUSG00000046667	Rbm12b1	72	44.262	ENSAPEG00000022079	rbm12b	97	39.818	Amphiprion_percula
ENSMUSG00000046667	Rbm12b1	67	51.389	ENSATEG00000004578	rbm12b	85	51.389	Anabas_testudineus
ENSMUSG00000046667	Rbm12b1	86	55.034	ENSAPLG00000002020	RBM12B	100	55.034	Anas_platyrhynchos
ENSMUSG00000046667	Rbm12b1	85	41.786	ENSACAG00000003463	RBM12B	72	41.786	Anolis_carolinensis
ENSMUSG00000046667	Rbm12b1	100	72.695	ENSANAG00000034015	RBM12B	100	72.695	Aotus_nancymaae
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSACLG00000005575	rbm12b	84	50.667	Astatotilapia_calliptera
ENSMUSG00000046667	Rbm12b1	64	50.667	ENSACLG00000005578	rbm12b	81	50.667	Astatotilapia_calliptera
ENSMUSG00000046667	Rbm12b1	68	44.000	ENSAMXG00000041973	rbm12b	87	44.000	Astyanax_mexicanus
ENSMUSG00000046667	Rbm12b1	50	56.977	ENSAMXG00000020853	zgc:153215	68	56.977	Astyanax_mexicanus
ENSMUSG00000046667	Rbm12b1	100	71.134	ENSBTAG00000013408	RBM12B	100	71.134	Bos_taurus
ENSMUSG00000046667	Rbm12b1	100	70.728	ENSCAFG00000009109	RBM12B	100	72.109	Canis_familiaris
ENSMUSG00000046667	Rbm12b1	100	71.608	ENSCAFG00020012203	RBM12B	100	71.608	Canis_lupus_dingo
ENSMUSG00000046667	Rbm12b1	77	74.809	ENSCHIG00000006790	RBM12B	89	74.809	Capra_hircus
ENSMUSG00000046667	Rbm12b1	100	64.474	ENSTSYG00000012515	RBM12B	100	71.260	Carlito_syrichta
ENSMUSG00000046667	Rbm12b1	100	66.911	ENSCAPG00000003543	RBM12B	100	65.340	Cavia_aperea
ENSMUSG00000046667	Rbm12b1	100	66.911	ENSCPOG00000007815	RBM12B	100	65.340	Cavia_porcellus
ENSMUSG00000046667	Rbm12b1	100	72.023	ENSCATG00000030769	RBM12B	100	71.594	Cercocebus_atys
ENSMUSG00000046667	Rbm12b1	100	67.120	ENSCLAG00000017617	RBM12B	100	65.026	Chinchilla_lanigera
ENSMUSG00000046667	Rbm12b1	100	72.476	ENSCSAG00000018559	RBM12B	100	72.476	Chlorocebus_sabaeus
ENSMUSG00000046667	Rbm12b1	98	64.458	ENSCHOG00000008934	RBM12B	100	69.814	Choloepus_hoffmanni
ENSMUSG00000046667	Rbm12b1	85	54.146	ENSCPBG00000003061	RBM12B	100	54.146	Chrysemys_picta_bellii
ENSMUSG00000046667	Rbm12b1	100	71.940	ENSCANG00000030379	RBM12B	100	71.396	Colobus_angolensis_palliatus
ENSMUSG00000046667	Rbm12b1	100	79.505	ENSCGRG00001008710	-	97	79.505	Cricetulus_griseus_chok1gshd
ENSMUSG00000046667	Rbm12b1	70	50.667	ENSCSEG00000004610	rbm12b	81	50.667	Cynoglossus_semilaevis
ENSMUSG00000046667	Rbm12b1	52	46.377	ENSCVAG00000009259	-	99	46.377	Cyprinodon_variegatus
ENSMUSG00000046667	Rbm12b1	67	49.333	ENSCVAG00000011047	rbm12b	86	49.333	Cyprinodon_variegatus
ENSMUSG00000046667	Rbm12b1	100	39.676	ENSDARG00000079717	rbm12b	91	40.927	Danio_rerio
ENSMUSG00000046667	Rbm12b1	58	30.571	ENSDARG00000055889	zgc:153215	99	30.571	Danio_rerio
ENSMUSG00000046667	Rbm12b1	100	71.467	ENSDNOG00000041608	RBM12B	100	71.739	Dasypus_novemcinctus
ENSMUSG00000046667	Rbm12b1	100	65.282	ENSDORG00000024034	-	100	64.537	Dipodomys_ordii
ENSMUSG00000046667	Rbm12b1	76	64.119	ENSETEG00000013005	-	86	64.587	Echinops_telfairi
ENSMUSG00000046667	Rbm12b1	54	31.648	ENSEBUG00000009015	-	71	31.648	Eptatretus_burgeri
ENSMUSG00000046667	Rbm12b1	100	72.323	ENSEASG00005016297	RBM12B	100	72.210	Equus_asinus_asinus
ENSMUSG00000046667	Rbm12b1	100	71.429	ENSECAG00000017870	RBM12B	100	73.003	Equus_caballus
ENSMUSG00000046667	Rbm12b1	58	30.366	ENSELUG00000009039	zgc:153215	97	30.366	Esox_lucius
ENSMUSG00000046667	Rbm12b1	100	73.988	ENSFCAG00000029274	RBM12B	100	73.988	Felis_catus
ENSMUSG00000046667	Rbm12b1	86	51.007	ENSFALG00000014893	RBM12B	100	51.007	Ficedula_albicollis
ENSMUSG00000046667	Rbm12b1	100	66.983	ENSFDAG00000005576	RBM12B	97	65.717	Fukomys_damarensis
ENSMUSG00000046667	Rbm12b1	67	48.000	ENSFHEG00000016425	rbm12b	85	48.000	Fundulus_heteroclitus
ENSMUSG00000046667	Rbm12b1	69	52.778	ENSGMOG00000013467	rbm12b	89	52.778	Gadus_morhua
ENSMUSG00000046667	Rbm12b1	86	55.034	ENSGALG00000035129	RBM12B	100	55.034	Gallus_gallus
ENSMUSG00000046667	Rbm12b1	57	30.409	ENSGAFG00000007845	zgc:153215	98	30.409	Gambusia_affinis
ENSMUSG00000046667	Rbm12b1	68	48.000	ENSGAFG00000007224	rbm12b	86	48.000	Gambusia_affinis
ENSMUSG00000046667	Rbm12b1	67	52.000	ENSGACG00000008682	rbm12b	85	52.000	Gasterosteus_aculeatus
ENSMUSG00000046667	Rbm12b1	85	54.068	ENSGAGG00000009774	RBM12B	100	54.068	Gopherus_agassizii
ENSMUSG00000046667	Rbm12b1	100	71.868	ENSGGOG00000011909	RBM12B	100	71.818	Gorilla_gorilla
ENSMUSG00000046667	Rbm12b1	71	50.667	ENSHBUG00000016227	rbm12b	88	50.667	Haplochromis_burtoni
ENSMUSG00000046667	Rbm12b1	100	66.494	ENSHGLG00000009063	RBM12B	100	65.353	Heterocephalus_glaber_female
ENSMUSG00000046667	Rbm12b1	100	66.494	ENSHGLG00100021324	RBM12B	100	65.353	Heterocephalus_glaber_male
ENSMUSG00000046667	Rbm12b1	67	52.000	ENSHCOG00000014952	rbm12b	89	52.000	Hippocampus_comes
ENSMUSG00000046667	Rbm12b1	83	39.683	ENSIPUG00000001167	RBM12B	97	39.683	Ictalurus_punctatus
ENSMUSG00000046667	Rbm12b1	100	76.112	ENSSTOG00000027445	RBM12B	100	76.112	Ictidomys_tridecemlineatus
ENSMUSG00000046667	Rbm12b1	100	70.090	ENSJJAG00000004165	-	100	68.962	Jaculus_jaculus
ENSMUSG00000046667	Rbm12b1	67	51.351	ENSKMAG00000013704	rbm12b	83	51.351	Kryptolebias_marmoratus
ENSMUSG00000046667	Rbm12b1	67	51.351	ENSKMAG00000013715	rbm12b	86	51.351	Kryptolebias_marmoratus
ENSMUSG00000046667	Rbm12b1	71	66.234	ENSLACG00000007177	RBM12B	95	50.450	Latimeria_chalumnae
ENSMUSG00000046667	Rbm12b1	67	53.333	ENSLOCG00000018344	rbm12b	86	53.333	Lepisosteus_oculatus
ENSMUSG00000046667	Rbm12b1	100	69.765	ENSLAFG00000029949	RBM12B	100	70.581	Loxodonta_africana
ENSMUSG00000046667	Rbm12b1	100	72.055	ENSMFAG00000045430	RBM12B	100	71.511	Macaca_fascicularis
ENSMUSG00000046667	Rbm12b1	100	72.476	ENSMMUG00000005558	RBM12B	100	72.476	Macaca_mulatta
ENSMUSG00000046667	Rbm12b1	100	72.055	ENSMNEG00000041292	RBM12B	100	71.511	Macaca_nemestrina
ENSMUSG00000046667	Rbm12b1	100	71.412	ENSMLEG00000037288	RBM12B	100	71.412	Mandrillus_leucophaeus
ENSMUSG00000046667	Rbm12b1	70	54.667	ENSMAMG00000011998	rbm12b	86	54.667	Mastacembelus_armatus
ENSMUSG00000046667	Rbm12b1	58	32.143	ENSMAMG00000012038	zgc:153215	94	32.143	Mastacembelus_armatus
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSMZEG00005014845	rbm12b	85	50.000	Maylandia_zebra
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSMZEG00005015005	rbm12b	86	50.667	Maylandia_zebra
ENSMUSG00000046667	Rbm12b1	59	57.447	ENSMGAG00000011985	RBM12B	99	57.447	Meleagris_gallopavo
ENSMUSG00000046667	Rbm12b1	100	79.621	ENSMAUG00000021752	-	100	79.621	Mesocricetus_auratus
ENSMUSG00000046667	Rbm12b1	100	71.893	ENSMICG00000036969	RBM12B	100	73.239	Microcebus_murinus
ENSMUSG00000046667	Rbm12b1	100	76.071	ENSMOCG00000005603	-	100	76.071	Microtus_ochrogaster
ENSMUSG00000046667	Rbm12b1	67	48.750	ENSMMOG00000002404	rbm12b	82	48.750	Mola_mola
ENSMUSG00000046667	Rbm12b1	96	60.543	ENSMODG00000007436	RBM12B	98	55.205	Monodelphis_domestica
ENSMUSG00000046667	Rbm12b1	73	48.750	ENSMALG00000012059	rbm12b	91	48.750	Monopterus_albus
ENSMUSG00000046667	Rbm12b1	58	30.078	ENSMALG00000001222	zgc:153215	99	30.078	Monopterus_albus
ENSMUSG00000046667	Rbm12b1	100	87.746	MGP_SPRETEiJ_G0026765	-	100	85.137	Mus_spretus
ENSMUSG00000046667	Rbm12b1	100	96.651	MGP_SPRETEiJ_G0026766	-	100	96.651	Mus_spretus
ENSMUSG00000046667	Rbm12b1	100	70.092	ENSMPUG00000018637	RBM12B	100	72.169	Mustela_putorius_furo
ENSMUSG00000046667	Rbm12b1	100	62.788	ENSMLUG00000002359	RBM12B	100	62.800	Myotis_lucifugus
ENSMUSG00000046667	Rbm12b1	100	70.291	ENSNGAG00000002801	-	100	69.579	Nannospalax_galili
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSNBRG00000015057	rbm12b	86	50.667	Neolamprologus_brichardi
ENSMUSG00000046667	Rbm12b1	100	70.946	ENSNLEG00000032050	RBM12B	100	70.946	Nomascus_leucogenys
ENSMUSG00000046667	Rbm12b1	100	66.143	ENSODEG00000019204	RBM12B	100	65.199	Octodon_degus
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSONIG00000020612	rbm12b	86	50.667	Oreochromis_niloticus
ENSMUSG00000046667	Rbm12b1	86	56.667	ENSOANG00000015735	-	97	56.667	Ornithorhynchus_anatinus
ENSMUSG00000046667	Rbm12b1	100	71.886	ENSOCUG00000010353	RBM12B	100	71.886	Oryctolagus_cuniculus
ENSMUSG00000046667	Rbm12b1	68	50.667	ENSORLG00000008228	rbm12b	84	50.667	Oryzias_latipes
ENSMUSG00000046667	Rbm12b1	68	50.667	ENSORLG00020013619	rbm12b	84	50.667	Oryzias_latipes_hni
ENSMUSG00000046667	Rbm12b1	68	50.667	ENSORLG00015019999	rbm12b	84	50.667	Oryzias_latipes_hsok
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSOMEG00000022523	rbm12b	83	50.667	Oryzias_melastigma
ENSMUSG00000046667	Rbm12b1	100	64.712	ENSOGAG00000002979	RBM12B	100	62.892	Otolemur_garnettii
ENSMUSG00000046667	Rbm12b1	100	73.618	ENSPTIG00000020071	RBM12B	100	73.618	Panthera_tigris_altaica
ENSMUSG00000046667	Rbm12b1	100	71.041	ENSPTRG00000020420	RBM12B	99	72.614	Pan_troglodytes
ENSMUSG00000046667	Rbm12b1	100	71.525	ENSPANG00000035535	RBM12B	100	71.525	Papio_anubis
ENSMUSG00000046667	Rbm12b1	57	33.204	ENSPKIG00000014851	zgc:153215	98	33.204	Paramormyrops_kingsleyae
ENSMUSG00000046667	Rbm12b1	67	52.000	ENSPKIG00000018719	rbm12b	85	52.000	Paramormyrops_kingsleyae
ENSMUSG00000046667	Rbm12b1	84	53.859	ENSPSIG00000001348	RBM12B	100	53.859	Pelodiscus_sinensis
ENSMUSG00000046667	Rbm12b1	52	37.237	ENSPMGG00000012348	-	97	37.237	Periophthalmus_magnuspinnatus
ENSMUSG00000046667	Rbm12b1	100	80.118	ENSPEMG00000008279	-	100	80.118	Peromyscus_maniculatus_bairdii
ENSMUSG00000046667	Rbm12b1	96	60.925	ENSPCIG00000008556	RBM12B	100	55.724	Phascolarctos_cinereus
ENSMUSG00000046667	Rbm12b1	68	48.000	ENSPFOG00000020937	rbm12b	82	48.000	Poecilia_formosa
ENSMUSG00000046667	Rbm12b1	51	51.190	ENSPFOG00000017451	zgc:153215	67	51.190	Poecilia_formosa
ENSMUSG00000046667	Rbm12b1	67	48.000	ENSPLAG00000018782	rbm12b	86	48.000	Poecilia_latipinna
ENSMUSG00000046667	Rbm12b1	67	48.000	ENSPMEG00000011418	rbm12b	86	48.000	Poecilia_mexicana
ENSMUSG00000046667	Rbm12b1	68	48.000	ENSPREG00000020770	rbm12b	86	48.000	Poecilia_reticulata
ENSMUSG00000046667	Rbm12b1	100	71.409	ENSPPYG00000018745	RBM12B	100	72.199	Pongo_abelii
ENSMUSG00000046667	Rbm12b1	100	72.800	ENSPCOG00000023546	RBM12B	100	72.800	Propithecus_coquereli
ENSMUSG00000046667	Rbm12b1	100	67.884	ENSPVAG00000011803	RBM12B	100	66.488	Pteropus_vampyrus
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSPNYG00000016696	rbm12b	86	50.667	Pundamilia_nyererei
ENSMUSG00000046667	Rbm12b1	67	49.333	ENSPNAG00000008126	rbm12b	83	49.333	Pygocentrus_nattereri
ENSMUSG00000046667	Rbm12b1	58	30.505	ENSPNAG00000025628	zgc:153215	99	30.505	Pygocentrus_nattereri
ENSMUSG00000046667	Rbm12b1	88	86.863	ENSRNOG00000055292	LOC679087	100	86.863	Rattus_norvegicus
ENSMUSG00000046667	Rbm12b1	100	86.714	ENSRNOG00000016330	Rbm12b	100	86.714	Rattus_norvegicus
ENSMUSG00000046667	Rbm12b1	100	72.172	ENSRBIG00000035046	RBM12B	100	72.172	Rhinopithecus_bieti
ENSMUSG00000046667	Rbm12b1	100	71.412	ENSRROG00000023660	RBM12B	100	71.296	Rhinopithecus_roxellana
ENSMUSG00000046667	Rbm12b1	100	70.203	ENSSBOG00000027592	RBM12B	100	70.316	Saimiri_boliviensis_boliviensis
ENSMUSG00000046667	Rbm12b1	96	60.703	ENSSHAG00000015335	RBM12B	100	55.879	Sarcophilus_harrisii
ENSMUSG00000046667	Rbm12b1	67	52.000	ENSSFOG00015001584	rbm12b	85	52.000	Scleropages_formosus
ENSMUSG00000046667	Rbm12b1	58	33.667	ENSSFOG00015009427	zgc:153215	99	33.667	Scleropages_formosus
ENSMUSG00000046667	Rbm12b1	73	42.336	ENSSMAG00000019708	rbm12b	95	42.336	Scophthalmus_maximus
ENSMUSG00000046667	Rbm12b1	74	42.361	ENSSDUG00000006856	rbm12b	95	42.361	Seriola_dumerili
ENSMUSG00000046667	Rbm12b1	50	48.750	ENSSLDG00000013581	zgc:153215	78	46.739	Seriola_lalandi_dorsalis
ENSMUSG00000046667	Rbm12b1	74	41.897	ENSSLDG00000016156	rbm12b	95	41.897	Seriola_lalandi_dorsalis
ENSMUSG00000046667	Rbm12b1	74	70.560	ENSSARG00000011845	-	84	70.560	Sorex_araneus
ENSMUSG00000046667	Rbm12b1	58	52.519	ENSSPUG00000016954	RBM12B	91	53.565	Sphenodon_punctatus
ENSMUSG00000046667	Rbm12b1	75	38.911	ENSSPAG00000006774	rbm12b	97	38.911	Stegastes_partitus
ENSMUSG00000046667	Rbm12b1	100	71.854	ENSSSCG00000006110	RBM12B	100	71.854	Sus_scrofa
ENSMUSG00000046667	Rbm12b1	59	55.200	ENSTGUG00000011860	RBM12B	97	55.200	Taeniopygia_guttata
ENSMUSG00000046667	Rbm12b1	67	50.667	ENSTRUG00000013738	rbm12b	86	50.667	Takifugu_rubripes
ENSMUSG00000046667	Rbm12b1	78	72.936	ENSTBEG00000000449	RBM12B	87	68.421	Tupaia_belangeri
ENSMUSG00000046667	Rbm12b1	100	70.880	ENSUAMG00000023639	RBM12B	100	70.880	Ursus_americanus
ENSMUSG00000046667	Rbm12b1	100	68.216	ENSUMAG00000016008	RBM12B	100	67.459	Ursus_maritimus
ENSMUSG00000046667	Rbm12b1	86	87.329	ENSVPAG00000001080	RBM12B	90	87.329	Vicugna_pacos
ENSMUSG00000046667	Rbm12b1	100	72.064	ENSVVUG00000002694	RBM12B	100	72.064	Vulpes_vulpes
ENSMUSG00000046667	Rbm12b1	100	43.854	ENSXETG00000014694	rbm12b	100	46.516	Xenopus_tropicalis
ENSMUSG00000046667	Rbm12b1	70	45.205	ENSXETG00000014696	rbm12b	84	41.414	Xenopus_tropicalis
ENSMUSG00000046667	Rbm12b1	58	30.453	ENSXETG00000025920	-	97	30.453	Xenopus_tropicalis
ENSMUSG00000046667	Rbm12b1	55	39.877	ENSXCOG00000019735	-	100	39.752	Xiphophorus_couchianus
ENSMUSG00000046667	Rbm12b1	58	31.179	ENSXCOG00000019654	zgc:153215	98	31.179	Xiphophorus_couchianus
ENSMUSG00000046667	Rbm12b1	68	48.000	ENSXMAG00000014213	rbm12b	86	48.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process