EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000211980	-	933	-	-	- (aa)	-	-
ENSMUST00000212441	-	495	-	ENSMUSP00000148460	53 (aa)	-	A0A1D5RLQ2
ENSMUST00000212616	-	706	XM_006530642	ENSMUSP00000148660	235 (aa)	XP_006530705	A0A1D5RM74
ENSMUST00000212615	-	445	-	-	- (aa)	-	-
ENSMUST00000212952	-	714	-	ENSMUSP00000148333	238 (aa)	-	A0A1D5RLE4
ENSMUST00000212629	-	728	-	-	- (aa)	-	-
ENSMUST00000212338	-	856	-	-	- (aa)	-	-
ENSMUST00000212214	-	6779	-	ENSMUSP00000148404	350 (aa)	-	O54833
ENSMUST00000212750	-	2994	-	ENSMUSP00000148633	121 (aa)	-	A0A1D5RM55
ENSMUST00000056919	-	3773	XM_006530641	ENSMUSP00000055919	350 (aa)	XP_006530704	O54833

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG
mmu04064	NF-kappa B signaling pathway	KEGG
mmu04137	Mitophagy - animal	KEGG
mmu04310	Wnt signaling pathway	KEGG
mmu04520	Adherens junction	KEGG
mmu05162	Measles	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000046707	Csnk2a2	98	77.485	WBGene00002191	kin-3	96	77.457	Caenorhabditis_elegans
ENSMUSG00000046707	Csnk2a2	94	81.707	FBgn0264492	CkIIalpha	98	81.707	Drosophila_melanogaster
ENSMUSG00000046707	Csnk2a2	99	82.997	ENSMUSG00000074698	Csnk2a1	88	82.997	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000785	chromatin	-	ISO	Component
GO:0001669	acrosomal vesicle	-	ISO	Component
GO:0004672	protein kinase activity	27998980.	IDA	Function
GO:0004674	protein serine/threonine kinase activity	9694889.	IDA	Function
GO:0004674	protein serine/threonine kinase activity	18496528.	IMP	Function
GO:0004674	protein serine/threonine kinase activity	-	ISO	Function
GO:0005515	protein binding	19273531.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005956	protein kinase CK2 complex	9503019.	TAS	Component
GO:0006468	protein phosphorylation	14644449.27998980.	IDA	Process
GO:0006468	protein phosphorylation	18496528.	IMP	Process
GO:0006915	apoptotic process	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0016055	Wnt signaling pathway	-	IEA	Process
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0018105	peptidyl-serine phosphorylation	-	ISO	Process
GO:0031519	PcG protein complex	-	ISO	Component
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0051726	regulation of cell cycle	9694889.9930856.	IDA	Process
GO:1905818	regulation of chromosome separation	-	ISO	Process
GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	-	ISO	Process