EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000046711 (Gene tree)
Gene ID: 15361
Gene Symbol: Hmga1
Alias: HMG-I(Y)|HMGI(Y)|HMGY|Hmga1a|Hmga1b|Hmgi|Hmgiy
Full Name: high mobility group AT-hook 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 7178
Position: chr17: 27556497-27563674
Accession: 96160
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000231866	-	584	-	ENSMUSP00000155966	118 (aa)	-	UPI0001BB44D0
ENSMUST00000117600	-	1595	-	ENSMUSP00000113068	106 (aa)	-	P17095
ENSMUST00000231874	-	2001	-	ENSMUSP00000156199	107 (aa)	-	Q566K0
ENSMUST00000118599	-	1045	-	ENSMUSP00000113015	107 (aa)	-	P17095
ENSMUST00000118570	-	1898	-	ENSMUSP00000114101	96 (aa)	-	P17095
ENSMUST00000232013	-	805	-	ENSMUSP00000155886	107 (aa)	-	Q566K0
ENSMUST00000232265	-	1681	-	ENSMUSP00000156173	107 (aa)	-	Q566K0
ENSMUST00000232253	-	600	-	ENSMUSP00000155874	106 (aa)	-	Q3TE85
ENSMUST00000114888	-	1631	-	ENSMUSP00000110538	96 (aa)	-	P17095
ENSMUST00000232552	-	917	-	ENSMUSP00000156044	96 (aa)	-	Q3TVP0
ENSMUST00000231780	-	619	-	ENSMUSP00000155964	87 (aa)	-	UPI000DE7CF7C
ENSMUST00000231243	-	524	-	ENSMUSP00000155919	118 (aa)	-	UPI000DE7C940
ENSMUST00000231796	-	706	-	ENSMUSP00000155922	111 (aa)	-	UPI0000355650
ENSMUST00000119486	-	1030	-	ENSMUSP00000113916	107 (aa)	-	P17095
ENSMUST00000117254	-	916	-	ENSMUSP00000113011	95 (aa)	-	P17095
ENSMUST00000231825	-	1717	-	ENSMUSP00000156327	96 (aa)	-	Q3TVP0
ENSMUST00000231358	-	805	-	ENSMUSP00000155876	96 (aa)	-	Q3TVP0

Gene Model

Click here to download ENSMUSG00000046711's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000046711's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001158	enhancer sequence-specific DNA binding	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	IDA	Function
GO:0003677	DNA binding	19389484.	IDA	Function
GO:0003680	AT DNA binding	19389484.	IDA	Function
GO:0003680	AT DNA binding	-	ISO	Function
GO:0003682	chromatin binding	19389484.	IDA	Function
GO:0003713	transcription coactivator activity	19389484.	IDA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	21873635.	IBA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	12032866.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0006284	base-excision repair	21873635.	IBA	Process
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0007283	spermatogenesis	12874803.	IMP	Process
GO:0008134	transcription factor binding	-	ISO	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0030374	nuclear receptor transcription coactivator activity	-	ISO	Function
GO:0030527	structural constituent of chromatin	19389484.	TAS	Function
GO:0035985	senescence-associated heterochromatin focus	-	ISO	Component
GO:0042974	retinoic acid receptor binding	-	ISO	Function
GO:0042975	peroxisome proliferator activated receptor binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	19389484.	IDA	Process
GO:0046965	retinoid X receptor binding	-	ISO	Function
GO:0051575	5'-deoxyribose-5-phosphate lyase activity	-	ISO	Function
GO:0090575	RNA polymerase II transcription factor complex	19389484.	IDA	Component