EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000047126 (Gene tree)
Gene ID: 67300
Gene Symbol: Cltc
Alias: CHC
Full Name: clathrin%2C heavy polypeptide (Hc)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 63215
Position: chr11: 86694351-86757565
Accession: 2388633
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000060766	-	6163	-	ENSMUSP00000050220	1679 (aa)	-	Q5SXR6
ENSMUST00000134999	-	366	-	-	- (aa)	-	-
ENSMUST00000103186	-	6519	XM_006533983	ENSMUSP00000099475	1675 (aa)	XP_006534046	Q68FD5
ENSMUST00000133501	-	529	-	-	- (aa)	-	-
ENSMUST00000141152	-	2223	-	-	- (aa)	-	-
ENSMUST00000124385	-	898	-	ENSMUSP00000117674	216 (aa)	-	F6Z1R4

Gene Model

Click here to download ENSMUSG00000047126's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04142	Lysosome	KEGG
mmu04144	Endocytosis	KEGG
mmu04721	Synaptic vesicle cycle	KEGG
mmu04961	Endocrine and other factor-regulated calcium reabsorption	KEGG
mmu05016	Huntington disease	KEGG
mmu05100	Bacterial invasion of epithelial cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000047126's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000047126	Cltc	99	71.309	WBGene00011867	chc-1	99	71.403	Caenorhabditis_elegans
ENSMUSG00000047126	Cltc	100	99.881	ENSG00000141367	CLTC	100	100.000	Homo_sapiens
ENSMUSG00000047126	Cltc	98	49.879	YGL206C	CHC1	99	49.879	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	-	ISO	Process
GO:0003725	double-stranded RNA binding	21266579.	ISO	Function
GO:0005198	structural molecule activity	-	IEA	Function
GO:0005515	protein binding	23746204.24849652.25107275.26420826.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005739	mitochondrion	14651853.	HDA	Component
GO:0005764	lysosome	-	ISO	Component
GO:0005768	endosome	-	ISO	Component
GO:0005819	spindle	21873635.	IBA	Component
GO:0005819	spindle	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005905	clathrin-coated pit	-	IEA	Component
GO:0006886	intracellular protein transport	-	IEA	Process
GO:0006898	receptor-mediated endocytosis	21873635.	IBA	Process
GO:0006898	receptor-mediated endocytosis	-	ISO	Process
GO:0006914	autophagy	-	IEA	Process
GO:0007030	Golgi organization	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0016020	membrane	20080761.	IMP	Component
GO:0016192	vesicle-mediated transport	-	IEA	Process
GO:0019901	protein kinase binding	21307259.	IPI	Function
GO:0030117	membrane coat	11879655.	IDA	Component
GO:0030118	clathrin coat	-	ISO	Component
GO:0030130	clathrin coat of trans-Golgi network vesicle	-	IEA	Component
GO:0030132	clathrin coat of coated pit	-	IEA	Component
GO:0030136	clathrin-coated vesicle	-	ISO	Component
GO:0030315	T-tubule	-	ISO	Component
GO:0030506	ankyrin binding	-	ISO	Function
GO:0031072	heat shock protein binding	-	ISO	Function
GO:0031410	cytoplasmic vesicle	-	IEA	Component
GO:0031523	Myb complex	18548008.	ISO	Component
GO:0031623	receptor internalization	-	ISO	Process
GO:0032051	clathrin light chain binding	21873635.	IBA	Function
GO:0032051	clathrin light chain binding	-	ISO	Function
GO:0032991	protein-containing complex	21266579.	ISO	Component
GO:0033572	transferrin transport	-	ISO	Process
GO:0042147	retrograde transport, endosome to Golgi	-	ISO	Process
GO:0042277	peptide binding	-	ISO	Function
GO:0042383	sarcolemma	-	ISO	Component
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045334	clathrin-coated endocytic vesicle	21873635.	IBA	Component
GO:0048268	clathrin coat assembly	21873635.	IBA	Process
GO:0048268	clathrin coat assembly	-	ISO	Process
GO:0048488	synaptic vesicle endocytosis	-	ISO	Process
GO:0050750	low-density lipoprotein particle receptor binding	-	ISO	Function
GO:0051301	cell division	-	IEA	Process
GO:0060236	regulation of mitotic spindle organization	-	ISO	Process
GO:0071439	clathrin complex	21873635.	IBA	Component
GO:0071439	clathrin complex	-	ISO	Component
GO:0072583	clathrin-dependent endocytosis	-	ISO	Process
GO:0072686	mitotic spindle	-	ISO	Component
GO:0090307	mitotic spindle assembly	18548008.	ISO	Process
GO:0097718	disordered domain specific binding	-	ISO	Function
GO:0098684	photoreceptor ribbon synapse	23785143.	IDA	Component
GO:0098835	presynaptic endocytic zone membrane	23785143.	IDA	Component
GO:0098850	extrinsic component of synaptic vesicle membrane	-	ISO	Component
GO:0150093	amyloid-beta clearance by transcytosis	-	ISO	Process
GO:1900126	negative regulation of hyaluronan biosynthetic process	-	ISO	Process
GO:1903077	negative regulation of protein localization to plasma membrane	-	ISO	Process
GO:1990381	ubiquitin-specific protease binding	-	ISO	Function
GO:1990498	mitotic spindle microtubule	-	ISO	Component