EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000047213 (Gene tree)
Gene ID: 229096
Gene Symbol: Ythdf3
Alias: 9130022A11Rik
Full Name: YTH N6-methyladenosine RNA binding protein 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 33826 bases
Position: chr3:16183212-16217037
Accession: 1918850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000103982	YTH	PF04146.15	6.3e-40	1	1
ENSMUSP00000141610	YTH	PF04146.15	6.4e-40	1	1
ENSMUSP00000103983	YTH	PF04146.15	6.5e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000191774	-	3196	XM_006535442	ENSMUSP00000141610	589 (aa)	XP_006535505	Q8BYK6
ENSMUST00000193598	-	723	-	-	- (aa)	-	-
ENSMUST00000108345	-	5102	XM_006535443	ENSMUSP00000103982	585 (aa)	-	Q8BYK6
ENSMUST00000108346	-	4929	-	ENSMUSP00000103983	596 (aa)	-	Q8BYK6

Gene Model

Click here to download ENSMUSG00000047213's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000047213's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000047213	Ythdf3	100	98.803	ENSG00000185728	YTHDF3	100	99.099	Homo_sapiens
ENSMUSG00000047213	Ythdf3	100	97.778	ENSAMEG00000018113	YTHDF3	100	97.778	Ailuropoda_melanoleuca
ENSMUSG00000047213	Ythdf3	98	70.242	ENSATEG00000011478	ythdf3	94	93.514	Anabas_testudineus
ENSMUSG00000047213	Ythdf3	98	93.520	ENSAPLG00000011329	YTHDF3	97	92.335	Anas_platyrhynchos
ENSMUSG00000047213	Ythdf3	100	92.137	ENSACAG00000016837	YTHDF3	100	91.453	Anolis_carolinensis
ENSMUSG00000047213	Ythdf3	100	98.632	ENSANAG00000037920	YTHDF3	100	98.632	Aotus_nancymaae
ENSMUSG00000047213	Ythdf3	98	79.223	ENSAMXG00000030366	ythdf3	97	76.531	Astyanax_mexicanus
ENSMUSG00000047213	Ythdf3	100	98.120	ENSBTAG00000018557	YTHDF3	100	98.120	Bos_taurus
ENSMUSG00000047213	Ythdf3	100	98.632	ENSCJAG00000009217	YTHDF3	100	98.632	Callithrix_jacchus
ENSMUSG00000047213	Ythdf3	100	98.302	ENSCAFG00000007215	YTHDF3	100	98.302	Canis_familiaris
ENSMUSG00000047213	Ythdf3	100	98.462	ENSCAFG00020015995	YTHDF3	100	98.502	Canis_lupus_dingo
ENSMUSG00000047213	Ythdf3	100	98.462	ENSCHIG00000026460	YTHDF3	100	98.462	Capra_hircus
ENSMUSG00000047213	Ythdf3	100	98.132	ENSTSYG00000009117	YTHDF3	100	98.132	Carlito_syrichta
ENSMUSG00000047213	Ythdf3	99	97.747	ENSCAPG00000014006	YTHDF3	100	97.747	Cavia_aperea
ENSMUSG00000047213	Ythdf3	100	98.462	ENSCPOG00000002961	YTHDF3	100	98.462	Cavia_porcellus
ENSMUSG00000047213	Ythdf3	100	98.462	ENSCCAG00000022316	YTHDF3	100	98.502	Cebus_capucinus
ENSMUSG00000047213	Ythdf3	100	98.803	ENSCATG00000038669	YTHDF3	100	98.803	Cercocebus_atys
ENSMUSG00000047213	Ythdf3	99	98.614	ENSCLAG00000002515	YTHDF3	100	98.614	Chinchilla_lanigera
ENSMUSG00000047213	Ythdf3	100	98.803	ENSCSAG00000014280	YTHDF3	100	98.803	Chlorocebus_sabaeus
ENSMUSG00000047213	Ythdf3	99	96.034	ENSCHOG00000010194	YTHDF3	97	97.513	Choloepus_hoffmanni
ENSMUSG00000047213	Ythdf3	100	92.491	ENSCPBG00000021405	YTHDF3	100	91.809	Chrysemys_picta_bellii
ENSMUSG00000047213	Ythdf3	100	98.803	ENSCANG00000032631	YTHDF3	100	98.803	Colobus_angolensis_palliatus
ENSMUSG00000047213	Ythdf3	100	99.487	ENSCGRG00001021204	Ythdf3	100	99.487	Cricetulus_griseus_chok1gshd
ENSMUSG00000047213	Ythdf3	68	68.101	ENSCGRG00000008289	-	64	73.932	Cricetulus_griseus_crigri
ENSMUSG00000047213	Ythdf3	100	98.812	ENSCGRG00000005613	-	100	98.960	Cricetulus_griseus_crigri
ENSMUSG00000047213	Ythdf3	100	78.409	ENSDARG00000057939	ythdf3	100	76.268	Danio_rerio
ENSMUSG00000047213	Ythdf3	100	97.284	ENSDNOG00000037156	YTHDF3	100	97.284	Dasypus_novemcinctus
ENSMUSG00000047213	Ythdf3	100	98.120	ENSDORG00000014699	Ythdf3	100	98.120	Dipodomys_ordii
ENSMUSG00000047213	Ythdf3	97	98.070	ENSETEG00000007144	YTHDF3	100	98.070	Echinops_telfairi
ENSMUSG00000047213	Ythdf3	100	98.632	ENSEASG00005016224	YTHDF3	100	98.632	Equus_asinus_asinus
ENSMUSG00000047213	Ythdf3	100	98.632	ENSECAG00000011093	YTHDF3	100	98.632	Equus_caballus
ENSMUSG00000047213	Ythdf3	100	98.462	ENSFCAG00000025314	YTHDF3	100	98.462	Felis_catus
ENSMUSG00000047213	Ythdf3	99	93.080	ENSFALG00000005503	YTHDF3	100	92.322	Ficedula_albicollis
ENSMUSG00000047213	Ythdf3	99	98.440	ENSFDAG00000002735	YTHDF3	100	98.440	Fukomys_damarensis
ENSMUSG00000047213	Ythdf3	100	93.675	ENSGALG00000039774	YTHDF3	100	92.650	Gallus_gallus
ENSMUSG00000047213	Ythdf3	100	92.321	ENSGAGG00000003851	YTHDF3	100	91.638	Gopherus_agassizii
ENSMUSG00000047213	Ythdf3	100	98.472	ENSGGOG00000027681	YTHDF3	100	98.876	Gorilla_gorilla
ENSMUSG00000047213	Ythdf3	100	98.462	ENSHGLG00000009954	YTHDF3	100	98.462	Heterocephalus_glaber_female
ENSMUSG00000047213	Ythdf3	99	98.440	ENSHGLG00100012403	YTHDF3	100	98.440	Heterocephalus_glaber_male
ENSMUSG00000047213	Ythdf3	100	79.801	ENSIPUG00000014157	YTHDF1	97	78.475	Ictalurus_punctatus
ENSMUSG00000047213	Ythdf3	100	98.291	ENSSTOG00000027792	YTHDF3	100	98.291	Ictidomys_tridecemlineatus
ENSMUSG00000047213	Ythdf3	99	98.614	ENSJJAG00000017742	Ythdf3	100	98.614	Jaculus_jaculus
ENSMUSG00000047213	Ythdf3	100	83.139	ENSLACG00000002281	YTHDF3	100	83.139	Latimeria_chalumnae
ENSMUSG00000047213	Ythdf3	100	96.141	ENSLAFG00000016052	YTHDF3	100	96.141	Loxodonta_africana
ENSMUSG00000047213	Ythdf3	100	98.803	ENSMFAG00000043451	YTHDF3	100	98.876	Macaca_fascicularis
ENSMUSG00000047213	Ythdf3	100	98.803	ENSMMUG00000006729	YTHDF3	100	98.876	Macaca_mulatta
ENSMUSG00000047213	Ythdf3	100	98.803	ENSMNEG00000031200	YTHDF3	100	98.876	Macaca_nemestrina
ENSMUSG00000047213	Ythdf3	100	98.803	ENSMLEG00000036763	YTHDF3	100	98.803	Mandrillus_leucophaeus
ENSMUSG00000047213	Ythdf3	100	92.821	ENSMGAG00000011168	YTHDF3	100	91.795	Meleagris_gallopavo
ENSMUSG00000047213	Ythdf3	66	95.373	ENSMAUG00000012560	Ythdf3	97	94.444	Mesocricetus_auratus
ENSMUSG00000047213	Ythdf3	100	98.812	ENSMICG00000036869	-	100	98.812	Microcebus_murinus
ENSMUSG00000047213	Ythdf3	68	77.468	ENSMICG00000009379	-	100	75.443	Microcebus_murinus
ENSMUSG00000047213	Ythdf3	100	98.472	ENSMOCG00000011947	Ythdf3	100	98.614	Microtus_ochrogaster
ENSMUSG00000047213	Ythdf3	96	67.376	ENSMMOG00000003402	ythdf3	92	89.894	Mola_mola
ENSMUSG00000047213	Ythdf3	100	96.758	ENSMODG00000008255	YTHDF3	100	96.758	Monodelphis_domestica
ENSMUSG00000047213	Ythdf3	98	71.107	ENSMALG00000000147	ythdf3	91	92.432	Monopterus_albus
ENSMUSG00000047213	Ythdf3	100	100.000	MGP_CAROLIEiJ_G0024863	Ythdf3	100	100.000	Mus_caroli
ENSMUSG00000047213	Ythdf3	100	99.329	MGP_PahariEiJ_G0026310	Ythdf3	100	99.329	Mus_pahari
ENSMUSG00000047213	Ythdf3	100	99.832	MGP_SPRETEiJ_G0025794	Ythdf3	100	99.832	Mus_spretus
ENSMUSG00000047213	Ythdf3	100	98.462	ENSMPUG00000009857	YTHDF3	100	98.462	Mustela_putorius_furo
ENSMUSG00000047213	Ythdf3	99	98.107	ENSMLUG00000006541	YTHDF3	99	98.107	Myotis_lucifugus
ENSMUSG00000047213	Ythdf3	92	98.321	ENSNGAG00000018434	Ythdf3	96	98.321	Nannospalax_galili
ENSMUSG00000047213	Ythdf3	100	98.632	ENSNLEG00000003872	YTHDF3	100	98.632	Nomascus_leucogenys
ENSMUSG00000047213	Ythdf3	99	96.213	ENSMEUG00000011285	YTHDF3	100	96.213	Notamacropus_eugenii
ENSMUSG00000047213	Ythdf3	99	97.574	ENSODEG00000002033	YTHDF3	100	97.574	Octodon_degus
ENSMUSG00000047213	Ythdf3	99	92.943	ENSOANG00000005053	YTHDF3	100	90.706	Ornithorhynchus_anatinus
ENSMUSG00000047213	Ythdf3	100	97.148	ENSOCUG00000008723	YTHDF3	100	97.148	Oryctolagus_cuniculus
ENSMUSG00000047213	Ythdf3	100	74.919	ENSOMEG00000008212	ythdf3	99	75.472	Oryzias_melastigma
ENSMUSG00000047213	Ythdf3	99	97.945	ENSOGAG00000002302	YTHDF3	99	97.945	Otolemur_garnettii
ENSMUSG00000047213	Ythdf3	98	98.087	ENSOARG00000016882	YTHDF3	98	98.087	Ovis_aries
ENSMUSG00000047213	Ythdf3	100	98.462	ENSPPAG00000043483	YTHDF3	100	98.462	Pan_paniscus
ENSMUSG00000047213	Ythdf3	100	98.462	ENSPPRG00000004665	YTHDF3	100	98.462	Panthera_pardus
ENSMUSG00000047213	Ythdf3	100	98.302	ENSPTIG00000021537	YTHDF3	100	98.502	Panthera_tigris_altaica
ENSMUSG00000047213	Ythdf3	100	98.632	ENSPTRG00000049135	YTHDF3	100	98.632	Pan_troglodytes
ENSMUSG00000047213	Ythdf3	100	98.803	ENSPANG00000008030	YTHDF3	100	98.803	Papio_anubis
ENSMUSG00000047213	Ythdf3	99	80.172	ENSPKIG00000008298	ythdf3	96	80.319	Paramormyrops_kingsleyae
ENSMUSG00000047213	Ythdf3	100	94.539	ENSPSIG00000015861	YTHDF3	100	93.515	Pelodiscus_sinensis
ENSMUSG00000047213	Ythdf3	100	99.660	ENSPEMG00000020975	Ythdf3	100	99.827	Peromyscus_maniculatus_bairdii
ENSMUSG00000047213	Ythdf3	100	96.928	ENSPCIG00000017629	YTHDF3	100	96.928	Phascolarctos_cinereus
ENSMUSG00000047213	Ythdf3	91	98.936	ENSPPYG00000018626	YTHDF3	100	97.579	Pongo_abelii
ENSMUSG00000047213	Ythdf3	99	97.414	ENSPCAG00000016282	YTHDF3	100	97.414	Procavia_capensis
ENSMUSG00000047213	Ythdf3	100	98.974	ENSPCOG00000004856	YTHDF3	100	98.974	Propithecus_coquereli
ENSMUSG00000047213	Ythdf3	85	99.468	ENSPVAG00000002740	YTHDF3	86	99.468	Pteropus_vampyrus
ENSMUSG00000047213	Ythdf3	87	86.522	ENSPNYG00000002949	ythdf3	96	87.156	Pundamilia_nyererei
ENSMUSG00000047213	Ythdf3	100	99.829	ENSRNOG00000010084	Ythdf3	100	99.829	Rattus_norvegicus
ENSMUSG00000047213	Ythdf3	100	98.632	ENSRBIG00000036465	YTHDF3	100	98.632	Rhinopithecus_bieti
ENSMUSG00000047213	Ythdf3	100	98.462	ENSRROG00000035231	YTHDF3	100	98.462	Rhinopithecus_roxellana
ENSMUSG00000047213	Ythdf3	100	98.632	ENSSBOG00000035287	YTHDF3	100	98.632	Saimiri_boliviensis_boliviensis
ENSMUSG00000047213	Ythdf3	100	96.422	ENSSHAG00000009482	YTHDF3	100	96.422	Sarcophilus_harrisii
ENSMUSG00000047213	Ythdf3	97	98.421	ENSSARG00000007626	YTHDF3	99	98.421	Sorex_araneus
ENSMUSG00000047213	Ythdf3	99	92.586	ENSSPUG00000009390	YTHDF3	98	91.901	Sphenodon_punctatus
ENSMUSG00000047213	Ythdf3	91	98.689	ENSSSCG00000033144	YTHDF3	100	98.689	Sus_scrofa
ENSMUSG00000047213	Ythdf3	98	93.194	ENSTGUG00000011243	YTHDF3	98	92.157	Taeniopygia_guttata
ENSMUSG00000047213	Ythdf3	80	97.867	ENSTBEG00000005747	YTHDF3	81	97.867	Tupaia_belangeri
ENSMUSG00000047213	Ythdf3	99	89.138	ENSTTRG00000014564	YTHDF3	98	88.908	Tursiops_truncatus
ENSMUSG00000047213	Ythdf3	100	98.632	ENSUAMG00000012624	YTHDF3	100	98.632	Ursus_americanus
ENSMUSG00000047213	Ythdf3	100	98.472	ENSUMAG00000014104	YTHDF3	100	98.472	Ursus_maritimus
ENSMUSG00000047213	Ythdf3	99	85.542	ENSVPAG00000008104	YTHDF3	98	84.359	Vicugna_pacos
ENSMUSG00000047213	Ythdf3	100	98.462	ENSVVUG00000018384	YTHDF3	100	98.462	Vulpes_vulpes
ENSMUSG00000047213	Ythdf3	100	87.863	ENSXETG00000021659	ythdf3	100	88.205	Xenopus_tropicalis
ENSMUSG00000047213	Ythdf3	99	74.252	ENSXCOG00000009687	ythdf3	99	76.117	Xiphophorus_couchianus
ENSMUSG00000047213	Ythdf3	100	75.772	ENSXMAG00000009698	ythdf3	99	76.460	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0043022	ribosome binding	-	ISO	Function
GO:0045727	positive regulation of translation	-	ISO	Process
GO:0045948	positive regulation of translational initiation	-	ISO	Process
GO:0061157	mRNA destabilization	-	ISO	Process
GO:1990247	N6-methyladenosine-containing RNA binding	-	ISO	Function